data_5TJY
#
_model_server_result.job_id            3SQytycy1Cusk6RedGjuxg 
_model_server_result.datetime_utc      '2024-12-16 11:22:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tjy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":311}' 
#
_entry.id    5TJY 
#
_exptl.entry_id    5TJY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5TJY 
_cell.length_a            66.421 
_cell.length_b            66.421 
_cell.length_c            249.363 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TJY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 I N N 
? 9 J N N 
? 9 K N N 
? 9 L N N 
? 9 M N N 
? 9 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O VAL 21 A VAL 20 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc2 A O ALA 22 A ALA 21 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc3 A O ALA 24 A ALA 23 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc4 A O LEU 27 A LEU 26 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc5 H NA NA . A NA 307 1_555 P O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? 
metalc ? metalc6 H NA NA . A NA 307 1_555 P O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 85 n n 
C1 C2 EDO sing 86 n n 
C1 H11 EDO sing 87 n n 
C1 H12 EDO sing 88 n n 
O1 HO1 EDO sing 89 n n 
C2 O2 EDO sing 90 n n 
C2 H21 EDO sing 91 n n 
C2 H22 EDO sing 92 n n 
O2 HO2 EDO sing 93 n n 
#
_atom_sites.entry_id                     5TJY 
_atom_sites.fract_transf_matrix[1][1]    0.015055 
_atom_sites.fract_transf_matrix[1][2]    0.008692 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PDC A 1 301 1 PDC PDC . 
C 3 NAI A 1 302 1 NAI NDP . 
D 4 SO4 A 1 303 2 SO4 SO4 . 
E 5 BEZ A 1 304 1 BEZ BEZ . 
F 6 IMD A 1 305 1 IMD IMD . 
G 7 PG4 A 1 306 1 PG4 PG4 . 
H 8 NA A 1 307 1 NA NA . 
I 9 EDO A 1 308 1 EDO EDO . 
J 9 EDO A 1 309 2 EDO EDO . 
K 9 EDO A 1 310 1 EDO EDO . 
L 9 EDO A 1 311 1 EDO EDO . 
M 9 EDO A 1 312 1 EDO EDO . 
N 9 EDO A 1 313 1 EDO EDO . 
O 10 CL A 1 314 1 CL CL . 
P 11 HOH A 1 401 45 HOH HOH . 
P 11 HOH A 2 402 96 HOH HOH . 
P 11 HOH A 3 403 79 HOH HOH . 
P 11 HOH A 4 404 1 HOH HOH . 
P 11 HOH A 5 405 9 HOH HOH . 
P 11 HOH A 6 406 30 HOH HOH . 
P 11 HOH A 7 407 38 HOH HOH . 
P 11 HOH A 8 408 18 HOH HOH . 
P 11 HOH A 9 409 22 HOH HOH . 
P 11 HOH A 10 410 8 HOH HOH . 
P 11 HOH A 11 411 130 HOH HOH . 
P 11 HOH A 12 412 83 HOH HOH . 
P 11 HOH A 13 413 2 HOH HOH . 
P 11 HOH A 14 414 76 HOH HOH . 
P 11 HOH A 15 415 26 HOH HOH . 
P 11 HOH A 16 416 16 HOH HOH . 
P 11 HOH A 17 417 39 HOH HOH . 
P 11 HOH A 18 418 75 HOH HOH . 
P 11 HOH A 19 419 21 HOH HOH . 
P 11 HOH A 20 420 7 HOH HOH . 
P 11 HOH A 21 421 52 HOH HOH . 
P 11 HOH A 22 422 5 HOH HOH . 
P 11 HOH A 23 423 131 HOH HOH . 
P 11 HOH A 24 424 54 HOH HOH . 
P 11 HOH A 25 425 68 HOH HOH . 
P 11 HOH A 26 426 58 HOH HOH . 
P 11 HOH A 27 427 69 HOH HOH . 
P 11 HOH A 28 428 84 HOH HOH . 
P 11 HOH A 29 429 50 HOH HOH . 
P 11 HOH A 30 430 138 HOH HOH . 
P 11 HOH A 31 431 35 HOH HOH . 
P 11 HOH A 32 432 10 HOH HOH . 
P 11 HOH A 33 433 19 HOH HOH . 
P 11 HOH A 34 434 29 HOH HOH . 
P 11 HOH A 35 435 13 HOH HOH . 
P 11 HOH A 36 436 57 HOH HOH . 
P 11 HOH A 37 437 24 HOH HOH . 
P 11 HOH A 38 438 31 HOH HOH . 
P 11 HOH A 39 439 120 HOH HOH . 
P 11 HOH A 40 440 53 HOH HOH . 
P 11 HOH A 41 441 4 HOH HOH . 
P 11 HOH A 42 442 86 HOH HOH . 
P 11 HOH A 43 443 25 HOH HOH . 
P 11 HOH A 44 444 136 HOH HOH . 
P 11 HOH A 45 445 107 HOH HOH . 
P 11 HOH A 46 446 70 HOH HOH . 
P 11 HOH A 47 447 6 HOH HOH . 
P 11 HOH A 48 448 87 HOH HOH . 
P 11 HOH A 49 449 114 HOH HOH . 
P 11 HOH A 50 450 113 HOH HOH . 
P 11 HOH A 51 451 81 HOH HOH . 
P 11 HOH A 52 452 43 HOH HOH . 
P 11 HOH A 53 453 116 HOH HOH . 
P 11 HOH A 54 454 49 HOH HOH . 
P 11 HOH A 55 455 48 HOH HOH . 
P 11 HOH A 56 456 125 HOH HOH . 
P 11 HOH A 57 457 34 HOH HOH . 
P 11 HOH A 58 458 126 HOH HOH . 
P 11 HOH A 59 459 67 HOH HOH . 
P 11 HOH A 60 460 82 HOH HOH . 
P 11 HOH A 61 461 60 HOH HOH . 
P 11 HOH A 62 462 106 HOH HOH . 
P 11 HOH A 63 463 91 HOH HOH . 
P 11 HOH A 64 464 89 HOH HOH . 
P 11 HOH A 65 465 17 HOH HOH . 
P 11 HOH A 66 466 23 HOH HOH . 
P 11 HOH A 67 467 14 HOH HOH . 
P 11 HOH A 68 468 137 HOH HOH . 
P 11 HOH A 69 469 42 HOH HOH . 
P 11 HOH A 70 470 132 HOH HOH . 
P 11 HOH A 71 471 127 HOH HOH . 
P 11 HOH A 72 472 102 HOH HOH . 
P 11 HOH A 73 473 119 HOH HOH . 
P 11 HOH A 74 474 20 HOH HOH . 
P 11 HOH A 75 475 36 HOH HOH . 
P 11 HOH A 76 476 133 HOH HOH . 
P 11 HOH A 77 477 110 HOH HOH . 
P 11 HOH A 78 478 134 HOH HOH . 
P 11 HOH A 79 479 115 HOH HOH . 
P 11 HOH A 80 480 66 HOH HOH . 
P 11 HOH A 81 481 97 HOH HOH . 
P 11 HOH A 82 482 3 HOH HOH . 
P 11 HOH A 83 483 15 HOH HOH . 
P 11 HOH A 84 484 74 HOH HOH . 
P 11 HOH A 85 485 64 HOH HOH . 
P 11 HOH A 86 486 33 HOH HOH . 
P 11 HOH A 87 487 65 HOH HOH . 
P 11 HOH A 88 488 12 HOH HOH . 
P 11 HOH A 89 489 109 HOH HOH . 
P 11 HOH A 90 490 73 HOH HOH . 
P 11 HOH A 91 491 93 HOH HOH . 
P 11 HOH A 92 492 11 HOH HOH . 
P 11 HOH A 93 493 103 HOH HOH . 
P 11 HOH A 94 494 85 HOH HOH . 
P 11 HOH A 95 495 71 HOH HOH . 
P 11 HOH A 96 496 111 HOH HOH . 
P 11 HOH A 97 497 135 HOH HOH . 
P 11 HOH A 98 498 77 HOH HOH . 
P 11 HOH A 99 499 104 HOH HOH . 
P 11 HOH A 100 500 117 HOH HOH . 
P 11 HOH A 101 501 101 HOH HOH . 
P 11 HOH A 102 502 124 HOH HOH . 
P 11 HOH A 103 503 80 HOH HOH . 
P 11 HOH A 104 504 78 HOH HOH . 
P 11 HOH A 105 505 128 HOH HOH . 
P 11 HOH A 106 506 62 HOH HOH . 
P 11 HOH A 107 507 46 HOH HOH . 
P 11 HOH A 108 508 41 HOH HOH . 
P 11 HOH A 109 509 129 HOH HOH . 
P 11 HOH A 110 510 55 HOH HOH . 
P 11 HOH A 111 511 72 HOH HOH . 
P 11 HOH A 112 512 40 HOH HOH . 
P 11 HOH A 113 513 37 HOH HOH . 
P 11 HOH A 114 514 63 HOH HOH . 
P 11 HOH A 115 515 94 HOH HOH . 
P 11 HOH A 116 516 105 HOH HOH . 
P 11 HOH A 117 517 118 HOH HOH . 
P 11 HOH A 118 518 32 HOH HOH . 
P 11 HOH A 119 519 100 HOH HOH . 
P 11 HOH A 120 520 92 HOH HOH . 
P 11 HOH A 121 521 112 HOH HOH . 
P 11 HOH A 122 522 90 HOH HOH . 
P 11 HOH A 123 523 139 HOH HOH . 
P 11 HOH A 124 524 122 HOH HOH . 
P 11 HOH A 125 525 51 HOH HOH . 
P 11 HOH A 126 526 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 9 19.973 1.416 -15.727 1 66.26 ? C1 EDO 311 A 1 
HETATM 2 O O1 EDO . . . L 9 18.9 0.823 -16.497 1 64.19 ? O1 EDO 311 A 1 
HETATM 3 C C2 EDO . . . L 9 20.614 2.595 -16.463 1 74.73 ? C2 EDO 311 A 1 
HETATM 4 O O2 EDO . . . L 9 21.807 3.018 -15.775 1 74.76 ? O2 EDO 311 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#