data_5TKD
#
_model_server_result.job_id            v6W47bK5v94JbCqNXAaEiw 
_model_server_result.datetime_utc      '2024-10-12 17:17:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tkd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":903}' 
#
_entry.id    5TKD 
#
_exptl.entry_id    5TKD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.42 
_cell.angle_gamma         90 
_cell.entry_id            5TKD 
_cell.length_a            69.599 
_cell.length_b            65.702 
_cell.length_c            74.702 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TKD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
B,E,F,G,I 3 1 
A,C,D,H 3 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -28.490826 0 69.055497 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 333 n n 
S O2 SO4 doub 334 n n 
S O3 SO4 sing 335 n n 
S O4 SO4 sing 336 n n 
#
_atom_sites.entry_id                     5TKD 
_atom_sites.fract_transf_matrix[1][1]    0.014368 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005928 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014481 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7GL A 1 901 4000 7GL LG1 . 
D 3 SO4 A 1 902 3 SO4 SO4 . 
E 2 7GL B 1 901 4000 7GL LG1 . 
F 3 SO4 B 1 902 1 SO4 SO4 . 
G 3 SO4 B 1 903 2 SO4 SO4 . 
H 4 HOH A 1 1001 240 HOH HOH . 
H 4 HOH A 2 1002 140 HOH HOH . 
H 4 HOH A 3 1003 89 HOH HOH . 
H 4 HOH A 4 1004 74 HOH HOH . 
H 4 HOH A 5 1005 125 HOH HOH . 
H 4 HOH A 6 1006 6 HOH HOH . 
H 4 HOH A 7 1007 31 HOH HOH . 
H 4 HOH A 8 1008 12 HOH HOH . 
H 4 HOH A 9 1009 147 HOH HOH . 
H 4 HOH A 10 1010 210 HOH HOH . 
H 4 HOH A 11 1011 156 HOH HOH . 
H 4 HOH A 12 1012 57 HOH HOH . 
H 4 HOH A 13 1013 60 HOH HOH . 
H 4 HOH A 14 1014 56 HOH HOH . 
H 4 HOH A 15 1015 28 HOH HOH . 
H 4 HOH A 16 1016 46 HOH HOH . 
H 4 HOH A 17 1017 7 HOH HOH . 
H 4 HOH A 18 1018 21 HOH HOH . 
H 4 HOH A 19 1019 237 HOH HOH . 
H 4 HOH A 20 1020 39 HOH HOH . 
H 4 HOH A 21 1021 40 HOH HOH . 
H 4 HOH A 22 1022 9 HOH HOH . 
H 4 HOH A 23 1023 160 HOH HOH . 
H 4 HOH A 24 1024 106 HOH HOH . 
H 4 HOH A 25 1025 111 HOH HOH . 
H 4 HOH A 26 1026 134 HOH HOH . 
H 4 HOH A 27 1027 70 HOH HOH . 
H 4 HOH A 28 1028 191 HOH HOH . 
H 4 HOH A 29 1029 84 HOH HOH . 
H 4 HOH A 30 1030 35 HOH HOH . 
H 4 HOH A 31 1031 169 HOH HOH . 
H 4 HOH A 32 1032 99 HOH HOH . 
H 4 HOH A 33 1033 151 HOH HOH . 
H 4 HOH A 34 1034 183 HOH HOH . 
H 4 HOH A 35 1035 65 HOH HOH . 
H 4 HOH A 36 1036 216 HOH HOH . 
H 4 HOH A 37 1037 113 HOH HOH . 
H 4 HOH A 38 1038 75 HOH HOH . 
H 4 HOH A 39 1039 14 HOH HOH . 
H 4 HOH A 40 1040 25 HOH HOH . 
H 4 HOH A 41 1041 180 HOH HOH . 
H 4 HOH A 42 1042 152 HOH HOH . 
H 4 HOH A 43 1043 17 HOH HOH . 
H 4 HOH A 44 1044 179 HOH HOH . 
H 4 HOH A 45 1045 32 HOH HOH . 
H 4 HOH A 46 1046 81 HOH HOH . 
H 4 HOH A 47 1047 208 HOH HOH . 
H 4 HOH A 48 1048 120 HOH HOH . 
H 4 HOH A 49 1049 53 HOH HOH . 
H 4 HOH A 50 1050 71 HOH HOH . 
H 4 HOH A 51 1051 132 HOH HOH . 
H 4 HOH A 52 1052 83 HOH HOH . 
H 4 HOH A 53 1053 16 HOH HOH . 
H 4 HOH A 54 1054 67 HOH HOH . 
H 4 HOH A 55 1055 72 HOH HOH . 
H 4 HOH A 56 1056 112 HOH HOH . 
H 4 HOH A 57 1057 69 HOH HOH . 
H 4 HOH A 58 1058 66 HOH HOH . 
H 4 HOH A 59 1059 174 HOH HOH . 
H 4 HOH A 60 1060 194 HOH HOH . 
H 4 HOH A 61 1061 64 HOH HOH . 
H 4 HOH A 62 1062 218 HOH HOH . 
H 4 HOH A 63 1063 98 HOH HOH . 
H 4 HOH A 64 1064 59 HOH HOH . 
H 4 HOH A 65 1065 63 HOH HOH . 
H 4 HOH A 66 1066 82 HOH HOH . 
H 4 HOH A 67 1067 226 HOH HOH . 
H 4 HOH A 68 1068 161 HOH HOH . 
H 4 HOH A 69 1069 181 HOH HOH . 
H 4 HOH A 70 1070 146 HOH HOH . 
H 4 HOH A 71 1071 102 HOH HOH . 
H 4 HOH A 72 1072 131 HOH HOH . 
H 4 HOH A 73 1073 153 HOH HOH . 
H 4 HOH A 74 1074 203 HOH HOH . 
H 4 HOH A 75 1075 51 HOH HOH . 
H 4 HOH A 76 1076 166 HOH HOH . 
H 4 HOH A 77 1077 178 HOH HOH . 
H 4 HOH A 78 1078 236 HOH HOH . 
H 4 HOH A 79 1079 150 HOH HOH . 
H 4 HOH A 80 1080 184 HOH HOH . 
H 4 HOH A 81 1081 144 HOH HOH . 
H 4 HOH A 82 1082 163 HOH HOH . 
H 4 HOH A 83 1083 204 HOH HOH . 
H 4 HOH A 84 1084 225 HOH HOH . 
H 4 HOH A 85 1085 137 HOH HOH . 
H 4 HOH A 86 1086 162 HOH HOH . 
I 4 HOH B 1 1001 77 HOH HOH . 
I 4 HOH B 2 1002 138 HOH HOH . 
I 4 HOH B 3 1003 103 HOH HOH . 
I 4 HOH B 4 1004 92 HOH HOH . 
I 4 HOH B 5 1005 33 HOH HOH . 
I 4 HOH B 6 1006 41 HOH HOH . 
I 4 HOH B 7 1007 241 HOH HOH . 
I 4 HOH B 8 1008 239 HOH HOH . 
I 4 HOH B 9 1009 58 HOH HOH . 
I 4 HOH B 10 1010 18 HOH HOH . 
I 4 HOH B 11 1011 8 HOH HOH . 
I 4 HOH B 12 1012 36 HOH HOH . 
I 4 HOH B 13 1013 61 HOH HOH . 
I 4 HOH B 14 1014 76 HOH HOH . 
I 4 HOH B 15 1015 199 HOH HOH . 
I 4 HOH B 16 1016 11 HOH HOH . 
I 4 HOH B 17 1017 195 HOH HOH . 
I 4 HOH B 18 1018 157 HOH HOH . 
I 4 HOH B 19 1019 108 HOH HOH . 
I 4 HOH B 20 1020 23 HOH HOH . 
I 4 HOH B 21 1021 20 HOH HOH . 
I 4 HOH B 22 1022 15 HOH HOH . 
I 4 HOH B 23 1023 52 HOH HOH . 
I 4 HOH B 24 1024 85 HOH HOH . 
I 4 HOH B 25 1025 172 HOH HOH . 
I 4 HOH B 26 1026 73 HOH HOH . 
I 4 HOH B 27 1027 101 HOH HOH . 
I 4 HOH B 28 1028 133 HOH HOH . 
I 4 HOH B 29 1029 19 HOH HOH . 
I 4 HOH B 30 1030 167 HOH HOH . 
I 4 HOH B 31 1031 232 HOH HOH . 
I 4 HOH B 32 1032 159 HOH HOH . 
I 4 HOH B 33 1033 45 HOH HOH . 
I 4 HOH B 34 1034 29 HOH HOH . 
I 4 HOH B 35 1035 13 HOH HOH . 
I 4 HOH B 36 1036 24 HOH HOH . 
I 4 HOH B 37 1037 168 HOH HOH . 
I 4 HOH B 38 1038 27 HOH HOH . 
I 4 HOH B 39 1039 94 HOH HOH . 
I 4 HOH B 40 1040 47 HOH HOH . 
I 4 HOH B 41 1041 38 HOH HOH . 
I 4 HOH B 42 1042 215 HOH HOH . 
I 4 HOH B 43 1043 2 HOH HOH . 
I 4 HOH B 44 1044 43 HOH HOH . 
I 4 HOH B 45 1045 50 HOH HOH . 
I 4 HOH B 46 1046 119 HOH HOH . 
I 4 HOH B 47 1047 105 HOH HOH . 
I 4 HOH B 48 1048 127 HOH HOH . 
I 4 HOH B 49 1049 3 HOH HOH . 
I 4 HOH B 50 1050 34 HOH HOH . 
I 4 HOH B 51 1051 198 HOH HOH . 
I 4 HOH B 52 1052 227 HOH HOH . 
I 4 HOH B 53 1053 121 HOH HOH . 
I 4 HOH B 54 1054 4 HOH HOH . 
I 4 HOH B 55 1055 80 HOH HOH . 
I 4 HOH B 56 1056 5 HOH HOH . 
I 4 HOH B 57 1057 30 HOH HOH . 
I 4 HOH B 58 1058 148 HOH HOH . 
I 4 HOH B 59 1059 223 HOH HOH . 
I 4 HOH B 60 1060 118 HOH HOH . 
I 4 HOH B 61 1061 213 HOH HOH . 
I 4 HOH B 62 1062 212 HOH HOH . 
I 4 HOH B 63 1063 26 HOH HOH . 
I 4 HOH B 64 1064 91 HOH HOH . 
I 4 HOH B 65 1065 230 HOH HOH . 
I 4 HOH B 66 1066 123 HOH HOH . 
I 4 HOH B 67 1067 44 HOH HOH . 
I 4 HOH B 68 1068 68 HOH HOH . 
I 4 HOH B 69 1069 141 HOH HOH . 
I 4 HOH B 70 1070 62 HOH HOH . 
I 4 HOH B 71 1071 96 HOH HOH . 
I 4 HOH B 72 1072 42 HOH HOH . 
I 4 HOH B 73 1073 109 HOH HOH . 
I 4 HOH B 74 1074 86 HOH HOH . 
I 4 HOH B 75 1075 126 HOH HOH . 
I 4 HOH B 76 1076 136 HOH HOH . 
I 4 HOH B 77 1077 49 HOH HOH . 
I 4 HOH B 78 1078 207 HOH HOH . 
I 4 HOH B 79 1079 201 HOH HOH . 
I 4 HOH B 80 1080 117 HOH HOH . 
I 4 HOH B 81 1081 79 HOH HOH . 
I 4 HOH B 82 1082 242 HOH HOH . 
I 4 HOH B 83 1083 95 HOH HOH . 
I 4 HOH B 84 1084 190 HOH HOH . 
I 4 HOH B 85 1085 22 HOH HOH . 
I 4 HOH B 86 1086 116 HOH HOH . 
I 4 HOH B 87 1087 110 HOH HOH . 
I 4 HOH B 88 1088 130 HOH HOH . 
I 4 HOH B 89 1089 176 HOH HOH . 
I 4 HOH B 90 1090 115 HOH HOH . 
I 4 HOH B 91 1091 104 HOH HOH . 
I 4 HOH B 92 1092 128 HOH HOH . 
I 4 HOH B 93 1093 10 HOH HOH . 
I 4 HOH B 94 1094 107 HOH HOH . 
I 4 HOH B 95 1095 48 HOH HOH . 
I 4 HOH B 96 1096 154 HOH HOH . 
I 4 HOH B 97 1097 37 HOH HOH . 
I 4 HOH B 98 1098 100 HOH HOH . 
I 4 HOH B 99 1099 170 HOH HOH . 
I 4 HOH B 100 1100 175 HOH HOH . 
I 4 HOH B 101 1101 205 HOH HOH . 
I 4 HOH B 102 1102 221 HOH HOH . 
I 4 HOH B 103 1103 142 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . G 3 -6.29 -4.919 61.809 1 46.77 ? S SO4 903 B 1 
HETATM 2 O O1 SO4 . . . G 3 -6.581 -3.487 61.797 1 47.09 ? O1 SO4 903 B 1 
HETATM 3 O O2 SO4 . . . G 3 -6.584 -5.519 60.531 1 52.17 ? O2 SO4 903 B 1 
HETATM 4 O O3 SO4 . . . G 3 -7.107 -5.57 62.813 1 49.49 ? O3 SO4 903 B 1 
HETATM 5 O O4 SO4 . . . G 3 -4.87 -5.129 62.072 1 47.61 ? O4 SO4 903 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#