data_5TKN # _model_server_result.job_id WLNxHQmFQoTmjO0_YCULdA _model_server_result.datetime_utc '2024-10-20 05:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tkn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5TKN # _exptl.entry_id 5TKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-D-fructose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TKN _cell.length_a 109.1 _cell.length_b 109.1 _cell.length_c 54.671 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 231 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 231 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id P6F _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id P6F _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.277 _struct_conn.pdbx_value_order doub # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id P6F _chem_comp.mon_nstd_flag . _chem_comp.name 1,6-di-O-phosphono-D-fructose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TKN _atom_sites.fract_transf_matrix[1][1] 0.009166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P6F A 1 401 401 P6F P6F . C 3 HOH A 1 501 183 HOH HOH . C 3 HOH A 2 502 160 HOH HOH . C 3 HOH A 3 503 29 HOH HOH . C 3 HOH A 4 504 83 HOH HOH . C 3 HOH A 5 505 66 HOH HOH . C 3 HOH A 6 506 129 HOH HOH . C 3 HOH A 7 507 198 HOH HOH . C 3 HOH A 8 508 12 HOH HOH . C 3 HOH A 9 509 81 HOH HOH . C 3 HOH A 10 510 118 HOH HOH . C 3 HOH A 11 511 157 HOH HOH . C 3 HOH A 12 512 188 HOH HOH . C 3 HOH A 13 513 217 HOH HOH . C 3 HOH A 14 514 121 HOH HOH . C 3 HOH A 15 515 117 HOH HOH . C 3 HOH A 16 516 1 HOH HOH . C 3 HOH A 17 517 4 HOH HOH . C 3 HOH A 18 518 26 HOH HOH . C 3 HOH A 19 519 82 HOH HOH . C 3 HOH A 20 520 213 HOH HOH . C 3 HOH A 21 521 101 HOH HOH . C 3 HOH A 22 522 109 HOH HOH . C 3 HOH A 23 523 10 HOH HOH . C 3 HOH A 24 524 38 HOH HOH . C 3 HOH A 25 525 27 HOH HOH . C 3 HOH A 26 526 19 HOH HOH . C 3 HOH A 27 527 142 HOH HOH . C 3 HOH A 28 528 68 HOH HOH . C 3 HOH A 29 529 20 HOH HOH . C 3 HOH A 30 530 180 HOH HOH . C 3 HOH A 31 531 181 HOH HOH . C 3 HOH A 32 532 11 HOH HOH . C 3 HOH A 33 533 88 HOH HOH . C 3 HOH A 34 534 99 HOH HOH . C 3 HOH A 35 535 55 HOH HOH . C 3 HOH A 36 536 229 HOH HOH . C 3 HOH A 37 537 57 HOH HOH . C 3 HOH A 38 538 28 HOH HOH . C 3 HOH A 39 539 95 HOH HOH . C 3 HOH A 40 540 206 HOH HOH . C 3 HOH A 41 541 122 HOH HOH . C 3 HOH A 42 542 37 HOH HOH . C 3 HOH A 43 543 161 HOH HOH . C 3 HOH A 44 544 45 HOH HOH . C 3 HOH A 45 545 9 HOH HOH . C 3 HOH A 46 546 17 HOH HOH . C 3 HOH A 47 547 123 HOH HOH . C 3 HOH A 48 548 48 HOH HOH . C 3 HOH A 49 549 63 HOH HOH . C 3 HOH A 50 550 84 HOH HOH . C 3 HOH A 51 551 46 HOH HOH . C 3 HOH A 52 552 49 HOH HOH . C 3 HOH A 53 553 168 HOH HOH . C 3 HOH A 54 554 31 HOH HOH . C 3 HOH A 55 555 25 HOH HOH . C 3 HOH A 56 556 58 HOH HOH . C 3 HOH A 57 557 116 HOH HOH . C 3 HOH A 58 558 70 HOH HOH . C 3 HOH A 59 559 201 HOH HOH . C 3 HOH A 60 560 33 HOH HOH . C 3 HOH A 61 561 71 HOH HOH . C 3 HOH A 62 562 187 HOH HOH . C 3 HOH A 63 563 91 HOH HOH . C 3 HOH A 64 564 74 HOH HOH . C 3 HOH A 65 565 2 HOH HOH . C 3 HOH A 66 566 43 HOH HOH . C 3 HOH A 67 567 44 HOH HOH . C 3 HOH A 68 568 39 HOH HOH . C 3 HOH A 69 569 60 HOH HOH . C 3 HOH A 70 570 92 HOH HOH . C 3 HOH A 71 571 54 HOH HOH . C 3 HOH A 72 572 100 HOH HOH . C 3 HOH A 73 573 56 HOH HOH . C 3 HOH A 74 574 73 HOH HOH . C 3 HOH A 75 575 222 HOH HOH . C 3 HOH A 76 576 105 HOH HOH . C 3 HOH A 77 577 167 HOH HOH . C 3 HOH A 78 578 62 HOH HOH . C 3 HOH A 79 579 53 HOH HOH . C 3 HOH A 80 580 102 HOH HOH . C 3 HOH A 81 581 14 HOH HOH . C 3 HOH A 82 582 24 HOH HOH . C 3 HOH A 83 583 147 HOH HOH . C 3 HOH A 84 584 40 HOH HOH . C 3 HOH A 85 585 89 HOH HOH . C 3 HOH A 86 586 115 HOH HOH . C 3 HOH A 87 587 90 HOH HOH . C 3 HOH A 88 588 203 HOH HOH . C 3 HOH A 89 589 13 HOH HOH . C 3 HOH A 90 590 7 HOH HOH . C 3 HOH A 91 591 30 HOH HOH . C 3 HOH A 92 592 22 HOH HOH . C 3 HOH A 93 593 94 HOH HOH . C 3 HOH A 94 594 152 HOH HOH . C 3 HOH A 95 595 104 HOH HOH . C 3 HOH A 96 596 227 HOH HOH . C 3 HOH A 97 597 3 HOH HOH . C 3 HOH A 98 598 72 HOH HOH . C 3 HOH A 99 599 21 HOH HOH . C 3 HOH A 100 600 193 HOH HOH . C 3 HOH A 101 601 34 HOH HOH . C 3 HOH A 102 602 61 HOH HOH . C 3 HOH A 103 603 182 HOH HOH . C 3 HOH A 104 604 50 HOH HOH . C 3 HOH A 105 605 186 HOH HOH . C 3 HOH A 106 606 192 HOH HOH . C 3 HOH A 107 607 41 HOH HOH . C 3 HOH A 108 608 69 HOH HOH . C 3 HOH A 109 609 151 HOH HOH . C 3 HOH A 110 610 5 HOH HOH . C 3 HOH A 111 611 6 HOH HOH . C 3 HOH A 112 612 47 HOH HOH . C 3 HOH A 113 613 156 HOH HOH . C 3 HOH A 114 614 166 HOH HOH . C 3 HOH A 115 615 42 HOH HOH . C 3 HOH A 116 616 200 HOH HOH . C 3 HOH A 117 617 36 HOH HOH . C 3 HOH A 118 618 96 HOH HOH . C 3 HOH A 119 619 97 HOH HOH . C 3 HOH A 120 620 79 HOH HOH . C 3 HOH A 121 621 232 HOH HOH . C 3 HOH A 122 622 8 HOH HOH . C 3 HOH A 123 623 140 HOH HOH . C 3 HOH A 124 624 143 HOH HOH . C 3 HOH A 125 625 144 HOH HOH . C 3 HOH A 126 626 223 HOH HOH . C 3 HOH A 127 627 64 HOH HOH . C 3 HOH A 128 628 154 HOH HOH . C 3 HOH A 129 629 16 HOH HOH . C 3 HOH A 130 630 59 HOH HOH . C 3 HOH A 131 631 124 HOH HOH . C 3 HOH A 132 632 208 HOH HOH . C 3 HOH A 133 633 106 HOH HOH . C 3 HOH A 134 634 15 HOH HOH . C 3 HOH A 135 635 52 HOH HOH . C 3 HOH A 136 636 65 HOH HOH . C 3 HOH A 137 637 32 HOH HOH . C 3 HOH A 138 638 51 HOH HOH . C 3 HOH A 139 639 18 HOH HOH . C 3 HOH A 140 640 128 HOH HOH . C 3 HOH A 141 641 138 HOH HOH . C 3 HOH A 142 642 191 HOH HOH . C 3 HOH A 143 643 189 HOH HOH . C 3 HOH A 144 644 80 HOH HOH . C 3 HOH A 145 645 164 HOH HOH . C 3 HOH A 146 646 23 HOH HOH . C 3 HOH A 147 647 172 HOH HOH . C 3 HOH A 148 648 86 HOH HOH . C 3 HOH A 149 649 204 HOH HOH . C 3 HOH A 150 650 175 HOH HOH . C 3 HOH A 151 651 35 HOH HOH . C 3 HOH A 152 652 148 HOH HOH . C 3 HOH A 153 653 85 HOH HOH . C 3 HOH A 154 654 165 HOH HOH . C 3 HOH A 155 655 149 HOH HOH . C 3 HOH A 156 656 98 HOH HOH . C 3 HOH A 157 657 170 HOH HOH . C 3 HOH A 158 658 108 HOH HOH . C 3 HOH A 159 659 234 HOH HOH . C 3 HOH A 160 660 176 HOH HOH . C 3 HOH A 161 661 112 HOH HOH . C 3 HOH A 162 662 77 HOH HOH . C 3 HOH A 163 663 194 HOH HOH . C 3 HOH A 164 664 177 HOH HOH . C 3 HOH A 165 665 136 HOH HOH . C 3 HOH A 166 666 169 HOH HOH . C 3 HOH A 167 667 216 HOH HOH . C 3 HOH A 168 668 159 HOH HOH . C 3 HOH A 169 669 221 HOH HOH . C 3 HOH A 170 670 220 HOH HOH . C 3 HOH A 171 671 76 HOH HOH . C 3 HOH A 172 672 173 HOH HOH . C 3 HOH A 173 673 145 HOH HOH . C 3 HOH A 174 674 146 HOH HOH . C 3 HOH A 175 675 87 HOH HOH . C 3 HOH A 176 676 135 HOH HOH . C 3 HOH A 177 677 158 HOH HOH . C 3 HOH A 178 678 134 HOH HOH . C 3 HOH A 179 679 141 HOH HOH . C 3 HOH A 180 680 179 HOH HOH . C 3 HOH A 181 681 132 HOH HOH . C 3 HOH A 182 682 150 HOH HOH . C 3 HOH A 183 683 233 HOH HOH . C 3 HOH A 184 684 235 HOH HOH . C 3 HOH A 185 685 218 HOH HOH . C 3 HOH A 186 686 236 HOH HOH . C 3 HOH A 187 687 131 HOH HOH . C 3 HOH A 188 688 207 HOH HOH . C 3 HOH A 189 689 103 HOH HOH . C 3 HOH A 190 690 67 HOH HOH . C 3 HOH A 191 691 190 HOH HOH . C 3 HOH A 192 692 75 HOH HOH . C 3 HOH A 193 693 113 HOH HOH . C 3 HOH A 194 694 214 HOH HOH . C 3 HOH A 195 695 199 HOH HOH . C 3 HOH A 196 696 78 HOH HOH . C 3 HOH A 197 697 125 HOH HOH . C 3 HOH A 198 698 127 HOH HOH . C 3 HOH A 199 699 110 HOH HOH . C 3 HOH A 200 700 119 HOH HOH . C 3 HOH A 201 701 171 HOH HOH . C 3 HOH A 202 702 93 HOH HOH . C 3 HOH A 203 703 210 HOH HOH . C 3 HOH A 204 704 139 HOH HOH . C 3 HOH A 205 705 230 HOH HOH . C 3 HOH A 206 706 111 HOH HOH . C 3 HOH A 207 707 224 HOH HOH . C 3 HOH A 208 708 219 HOH HOH . C 3 HOH A 209 709 126 HOH HOH . C 3 HOH A 210 710 174 HOH HOH . C 3 HOH A 211 711 231 HOH HOH . C 3 HOH A 212 712 163 HOH HOH . C 3 HOH A 213 713 155 HOH HOH . C 3 HOH A 214 714 225 HOH HOH . C 3 HOH A 215 715 226 HOH HOH . C 3 HOH A 216 716 209 HOH HOH . C 3 HOH A 217 717 211 HOH HOH . C 3 HOH A 218 718 196 HOH HOH . C 3 HOH A 219 719 130 HOH HOH . C 3 HOH A 220 720 107 HOH HOH . C 3 HOH A 221 721 114 HOH HOH . C 3 HOH A 222 722 197 HOH HOH . C 3 HOH A 223 723 184 HOH HOH . C 3 HOH A 224 724 162 HOH HOH . C 3 HOH A 225 725 205 HOH HOH . C 3 HOH A 226 726 137 HOH HOH . C 3 HOH A 227 727 120 HOH HOH . C 3 HOH A 228 728 185 HOH HOH . C 3 HOH A 229 729 202 HOH HOH . C 3 HOH A 230 730 195 HOH HOH . C 3 HOH A 231 731 228 HOH HOH . C 3 HOH A 232 732 215 HOH HOH . C 3 HOH A 233 733 133 HOH HOH . C 3 HOH A 234 734 212 HOH HOH . C 3 HOH A 235 735 178 HOH HOH . C 3 HOH A 236 736 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 P6F . . . B 2 -27.954 0.47 -14.611 1 38.86 ? P1 P6F 401 A 1 HETATM 2 O O1P P6F . . . B 2 -26.488 0.422 -14.991 1 38.75 ? O1P P6F 401 A 1 HETATM 3 O O2P P6F . . . B 2 -28.566 -0.891 -14.367 1 33.68 ? O2P P6F 401 A 1 HETATM 4 O O3P P6F . . . B 2 -28.798 1.38 -15.477 1 38.05 ? O3P P6F 401 A 1 HETATM 5 O O1 P6F . . . B 2 -27.985 1.164 -13.142 1 41.62 ? O1 P6F 401 A 1 HETATM 6 C C1 P6F . . . B 2 -27.439 0.494 -11.993 1 38.5 ? C1 P6F 401 A 1 HETATM 7 C C2 P6F . . . B 2 -27.468 1.326 -10.716 1 35.23 ? C2 P6F 401 A 1 HETATM 8 C C3 P6F . . . B 2 -27.981 2.745 -10.714 1 44.21 ? C3 P6F 401 A 1 HETATM 9 O O3 P6F . . . B 2 -28.149 3.199 -9.365 1 41.02 ? O3 P6F 401 A 1 HETATM 10 C C4 P6F . . . B 2 -27.016 3.677 -11.464 1 52.57 ? C4 P6F 401 A 1 HETATM 11 O O4 P6F . . . B 2 -25.761 3.74 -10.776 1 52.12 ? O4 P6F 401 A 1 HETATM 12 C C5 P6F . . . B 2 -27.6 5.087 -11.632 1 55.09 ? C5 P6F 401 A 1 HETATM 13 O O5 P6F . . . B 2 -28.442 5.091 -12.79 1 56.24 ? O5 P6F 401 A 1 HETATM 14 C C6 P6F . . . B 2 -26.545 6.187 -11.794 1 57.09 ? C6 P6F 401 A 1 HETATM 15 O O6 P6F . . . B 2 -27.167 7.483 -11.839 1 61.01 ? O6 P6F 401 A 1 HETATM 16 P P2 P6F . . . B 2 -26.331 8.868 -11.964 1 57.37 ? P2 P6F 401 A 1 HETATM 17 O O4P P6F . . . B 2 -25.83 8.868 -13.389 1 60.54 ? O4P P6F 401 A 1 HETATM 18 O O5P P6F . . . B 2 -27.347 9.95 -11.683 1 52.8 ? O5P P6F 401 A 1 HETATM 19 O O6P P6F . . . B 2 -25.237 8.766 -10.927 1 53.02 ? O6P P6F 401 A 1 HETATM 20 H H1 P6F . . . B 2 -27.997 -0.429 -11.824 1 46.2 ? H1 P6F 401 A 1 HETATM 21 H H1A P6F . . . B 2 -26.405 0.214 -12.207 1 46.2 ? H1A P6F 401 A 1 HETATM 22 H H3 P6F . . . B 2 -28.952 2.769 -11.229 1 53.05 ? H3 P6F 401 A 1 HETATM 23 H HO3 P6F . . . B 2 -28.783 2.629 -8.91 1 49.22 ? HO3 P6F 401 A 1 HETATM 24 H H4 P6F . . . B 2 -26.854 3.258 -12.467 1 63.08 ? H4 P6F 401 A 1 HETATM 25 H HO4 P6F . . . B 2 -25.375 2.855 -10.729 1 62.54 ? HO4 P6F 401 A 1 HETATM 26 H H5 P6F . . . B 2 -28.203 5.318 -10.742 1 66.11 ? H5 P6F 401 A 1 HETATM 27 H HO5 P6F . . . B 2 -29.156 4.449 -12.672 1 67.48 ? HO5 P6F 401 A 1 HETATM 28 H H6 P6F . . . B 2 -25.844 6.147 -10.957 1 68.5 ? H6 P6F 401 A 1 HETATM 29 H H6A P6F . . . B 2 -25.981 6.02 -12.714 1 68.5 ? H6A P6F 401 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #