data_5TKP # _model_server_result.job_id DrYiEdUbZU3nrPBkZP6WFw _model_server_result.datetime_utc '2024-11-05 16:39:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5TKP # _exptl.entry_id 5TKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-D-fructose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TKP _cell.length_a 109.12 _cell.length_b 109.12 _cell.length_c 54.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 231 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 231 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id P6F _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id P6F _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.274 _struct_conn.pdbx_value_order doub # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id P6F _chem_comp.mon_nstd_flag . _chem_comp.name 1,6-di-O-phosphono-D-fructose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P1 P6F doub 237 n n O1P P1 P6F sing 238 n n P1 O1 P6F sing 239 n n P1 O2P P6F sing 240 n n O1P HO1P P6F sing 241 n n O2P HO2P P6F sing 242 n n C1 O1 P6F sing 243 n n C1 C2 P6F sing 244 n n C1 H1 P6F sing 245 n n C1 H1A P6F sing 246 n n C3 C2 P6F sing 247 n n C2 O2 P6F doub 248 n n C4 C3 P6F sing 249 n n C3 O3 P6F sing 250 n n C3 H3 P6F sing 251 n n O3 HO3 P6F sing 252 n n C5 C4 P6F sing 253 n n C4 O4 P6F sing 254 n n C4 H4 P6F sing 255 n n O4 HO4 P6F sing 256 n n O5 C5 P6F sing 257 n n C6 C5 P6F sing 258 n n C5 H5 P6F sing 259 n n O5 HO5 P6F sing 260 n n O6 C6 P6F sing 261 n n C6 H6 P6F sing 262 n n C6 H6A P6F sing 263 n n P2 O6 P6F sing 264 n n O4P P2 P6F doub 265 n n O6P P2 P6F sing 266 n n P2 O5P P6F sing 267 n n O5P HO5P P6F sing 268 n n O6P HO6P P6F sing 269 n n # _atom_sites.entry_id 5TKP _atom_sites.fract_transf_matrix[1][1] 0.009164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P6F A 1 401 401 P6F P6F . C 3 HOH A 1 501 65 HOH HOH . C 3 HOH A 2 502 201 HOH HOH . C 3 HOH A 3 503 181 HOH HOH . C 3 HOH A 4 504 99 HOH HOH . C 3 HOH A 5 505 47 HOH HOH . C 3 HOH A 6 506 33 HOH HOH . C 3 HOH A 7 507 69 HOH HOH . C 3 HOH A 8 508 74 HOH HOH . C 3 HOH A 9 509 20 HOH HOH . C 3 HOH A 10 510 1 HOH HOH . C 3 HOH A 11 511 22 HOH HOH . C 3 HOH A 12 512 139 HOH HOH . C 3 HOH A 13 513 202 HOH HOH . C 3 HOH A 14 514 2 HOH HOH . C 3 HOH A 15 515 25 HOH HOH . C 3 HOH A 16 516 3 HOH HOH . C 3 HOH A 17 517 11 HOH HOH . C 3 HOH A 18 518 58 HOH HOH . C 3 HOH A 19 519 140 HOH HOH . C 3 HOH A 20 520 114 HOH HOH . C 3 HOH A 21 521 187 HOH HOH . C 3 HOH A 22 522 111 HOH HOH . C 3 HOH A 23 523 85 HOH HOH . C 3 HOH A 24 524 56 HOH HOH . C 3 HOH A 25 525 136 HOH HOH . C 3 HOH A 26 526 16 HOH HOH . C 3 HOH A 27 527 93 HOH HOH . C 3 HOH A 28 528 177 HOH HOH . C 3 HOH A 29 529 29 HOH HOH . C 3 HOH A 30 530 78 HOH HOH . C 3 HOH A 31 531 184 HOH HOH . C 3 HOH A 32 532 112 HOH HOH . C 3 HOH A 33 533 6 HOH HOH . C 3 HOH A 34 534 165 HOH HOH . C 3 HOH A 35 535 21 HOH HOH . C 3 HOH A 36 536 171 HOH HOH . C 3 HOH A 37 537 38 HOH HOH . C 3 HOH A 38 538 60 HOH HOH . C 3 HOH A 39 539 199 HOH HOH . C 3 HOH A 40 540 190 HOH HOH . C 3 HOH A 41 541 96 HOH HOH . C 3 HOH A 42 542 71 HOH HOH . C 3 HOH A 43 543 150 HOH HOH . C 3 HOH A 44 544 180 HOH HOH . C 3 HOH A 45 545 17 HOH HOH . C 3 HOH A 46 546 23 HOH HOH . C 3 HOH A 47 547 167 HOH HOH . C 3 HOH A 48 548 76 HOH HOH . C 3 HOH A 49 549 34 HOH HOH . C 3 HOH A 50 550 12 HOH HOH . C 3 HOH A 51 551 7 HOH HOH . C 3 HOH A 52 552 72 HOH HOH . C 3 HOH A 53 553 50 HOH HOH . C 3 HOH A 54 554 94 HOH HOH . C 3 HOH A 55 555 51 HOH HOH . C 3 HOH A 56 556 70 HOH HOH . C 3 HOH A 57 557 83 HOH HOH . C 3 HOH A 58 558 178 HOH HOH . C 3 HOH A 59 559 84 HOH HOH . C 3 HOH A 60 560 163 HOH HOH . C 3 HOH A 61 561 159 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . C 3 HOH A 63 563 53 HOH HOH . C 3 HOH A 64 564 164 HOH HOH . C 3 HOH A 65 565 145 HOH HOH . C 3 HOH A 66 566 158 HOH HOH . C 3 HOH A 67 567 57 HOH HOH . C 3 HOH A 68 568 31 HOH HOH . C 3 HOH A 69 569 81 HOH HOH . C 3 HOH A 70 570 35 HOH HOH . C 3 HOH A 71 571 19 HOH HOH . C 3 HOH A 72 572 49 HOH HOH . C 3 HOH A 73 573 185 HOH HOH . C 3 HOH A 74 574 59 HOH HOH . C 3 HOH A 75 575 73 HOH HOH . C 3 HOH A 76 576 32 HOH HOH . C 3 HOH A 77 577 95 HOH HOH . C 3 HOH A 78 578 153 HOH HOH . C 3 HOH A 79 579 113 HOH HOH . C 3 HOH A 80 580 63 HOH HOH . C 3 HOH A 81 581 15 HOH HOH . C 3 HOH A 82 582 26 HOH HOH . C 3 HOH A 83 583 157 HOH HOH . C 3 HOH A 84 584 142 HOH HOH . C 3 HOH A 85 585 8 HOH HOH . C 3 HOH A 86 586 101 HOH HOH . C 3 HOH A 87 587 64 HOH HOH . C 3 HOH A 88 588 125 HOH HOH . C 3 HOH A 89 589 42 HOH HOH . C 3 HOH A 90 590 46 HOH HOH . C 3 HOH A 91 591 80 HOH HOH . C 3 HOH A 92 592 132 HOH HOH . C 3 HOH A 93 593 48 HOH HOH . C 3 HOH A 94 594 5 HOH HOH . C 3 HOH A 95 595 137 HOH HOH . C 3 HOH A 96 596 10 HOH HOH . C 3 HOH A 97 597 86 HOH HOH . C 3 HOH A 98 598 87 HOH HOH . C 3 HOH A 99 599 36 HOH HOH . C 3 HOH A 100 600 40 HOH HOH . C 3 HOH A 101 601 130 HOH HOH . C 3 HOH A 102 602 173 HOH HOH . C 3 HOH A 103 603 4 HOH HOH . C 3 HOH A 104 604 170 HOH HOH . C 3 HOH A 105 605 92 HOH HOH . C 3 HOH A 106 606 126 HOH HOH . C 3 HOH A 107 607 39 HOH HOH . C 3 HOH A 108 608 9 HOH HOH . C 3 HOH A 109 609 37 HOH HOH . C 3 HOH A 110 610 24 HOH HOH . C 3 HOH A 111 611 13 HOH HOH . C 3 HOH A 112 612 27 HOH HOH . C 3 HOH A 113 613 14 HOH HOH . C 3 HOH A 114 614 77 HOH HOH . C 3 HOH A 115 615 98 HOH HOH . C 3 HOH A 116 616 174 HOH HOH . C 3 HOH A 117 617 160 HOH HOH . C 3 HOH A 118 618 186 HOH HOH . C 3 HOH A 119 619 68 HOH HOH . C 3 HOH A 120 620 115 HOH HOH . C 3 HOH A 121 621 175 HOH HOH . C 3 HOH A 122 622 191 HOH HOH . C 3 HOH A 123 623 41 HOH HOH . C 3 HOH A 124 624 52 HOH HOH . C 3 HOH A 125 625 118 HOH HOH . C 3 HOH A 126 626 88 HOH HOH . C 3 HOH A 127 627 129 HOH HOH . C 3 HOH A 128 628 75 HOH HOH . C 3 HOH A 129 629 18 HOH HOH . C 3 HOH A 130 630 105 HOH HOH . C 3 HOH A 131 631 108 HOH HOH . C 3 HOH A 132 632 103 HOH HOH . C 3 HOH A 133 633 100 HOH HOH . C 3 HOH A 134 634 54 HOH HOH . C 3 HOH A 135 635 90 HOH HOH . C 3 HOH A 136 636 55 HOH HOH . C 3 HOH A 137 637 146 HOH HOH . C 3 HOH A 138 638 194 HOH HOH . C 3 HOH A 139 639 166 HOH HOH . C 3 HOH A 140 640 28 HOH HOH . C 3 HOH A 141 641 89 HOH HOH . C 3 HOH A 142 642 182 HOH HOH . C 3 HOH A 143 643 43 HOH HOH . C 3 HOH A 144 644 79 HOH HOH . C 3 HOH A 145 645 200 HOH HOH . C 3 HOH A 146 646 176 HOH HOH . C 3 HOH A 147 647 183 HOH HOH . C 3 HOH A 148 648 124 HOH HOH . C 3 HOH A 149 649 205 HOH HOH . C 3 HOH A 150 650 106 HOH HOH . C 3 HOH A 151 651 161 HOH HOH . C 3 HOH A 152 652 162 HOH HOH . C 3 HOH A 153 653 188 HOH HOH . C 3 HOH A 154 654 67 HOH HOH . C 3 HOH A 155 655 147 HOH HOH . C 3 HOH A 156 656 44 HOH HOH . C 3 HOH A 157 657 102 HOH HOH . C 3 HOH A 158 658 151 HOH HOH . C 3 HOH A 159 659 204 HOH HOH . C 3 HOH A 160 660 30 HOH HOH . C 3 HOH A 161 661 123 HOH HOH . C 3 HOH A 162 662 144 HOH HOH . C 3 HOH A 163 663 127 HOH HOH . C 3 HOH A 164 664 135 HOH HOH . C 3 HOH A 165 665 197 HOH HOH . C 3 HOH A 166 666 192 HOH HOH . C 3 HOH A 167 667 45 HOH HOH . C 3 HOH A 168 668 91 HOH HOH . C 3 HOH A 169 669 156 HOH HOH . C 3 HOH A 170 670 82 HOH HOH . C 3 HOH A 171 671 109 HOH HOH . C 3 HOH A 172 672 143 HOH HOH . C 3 HOH A 173 673 61 HOH HOH . C 3 HOH A 174 674 189 HOH HOH . C 3 HOH A 175 675 117 HOH HOH . C 3 HOH A 176 676 203 HOH HOH . C 3 HOH A 177 677 120 HOH HOH . C 3 HOH A 178 678 110 HOH HOH . C 3 HOH A 179 679 131 HOH HOH . C 3 HOH A 180 680 168 HOH HOH . C 3 HOH A 181 681 206 HOH HOH . C 3 HOH A 182 682 196 HOH HOH . C 3 HOH A 183 683 104 HOH HOH . C 3 HOH A 184 684 172 HOH HOH . C 3 HOH A 185 685 138 HOH HOH . C 3 HOH A 186 686 152 HOH HOH . C 3 HOH A 187 687 155 HOH HOH . C 3 HOH A 188 688 122 HOH HOH . C 3 HOH A 189 689 179 HOH HOH . C 3 HOH A 190 690 66 HOH HOH . C 3 HOH A 191 691 128 HOH HOH . C 3 HOH A 192 692 133 HOH HOH . C 3 HOH A 193 693 97 HOH HOH . C 3 HOH A 194 694 198 HOH HOH . C 3 HOH A 195 695 107 HOH HOH . C 3 HOH A 196 696 134 HOH HOH . C 3 HOH A 197 697 149 HOH HOH . C 3 HOH A 198 698 169 HOH HOH . C 3 HOH A 199 699 141 HOH HOH . C 3 HOH A 200 700 195 HOH HOH . C 3 HOH A 201 701 154 HOH HOH . C 3 HOH A 202 702 116 HOH HOH . C 3 HOH A 203 703 193 HOH HOH . C 3 HOH A 204 704 148 HOH HOH . C 3 HOH A 205 705 121 HOH HOH . C 3 HOH A 206 706 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 P6F . . . B 2 -28.001 0.428 -14.624 1 43.54 ? P1 P6F 401 A 1 HETATM 2 O O1P P6F . . . B 2 -26.55 0.355 -15.056 1 41.37 ? O1P P6F 401 A 1 HETATM 3 O O2P P6F . . . B 2 -28.622 -0.917 -14.325 1 46.57 ? O2P P6F 401 A 1 HETATM 4 O O3P P6F . . . B 2 -28.866 1.333 -15.483 1 42.5 ? O3P P6F 401 A 1 HETATM 5 O O1 P6F . . . B 2 -27.989 1.161 -13.175 1 44.75 ? O1 P6F 401 A 1 HETATM 6 C C1 P6F . . . B 2 -27.501 0.477 -12.01 1 43.63 ? C1 P6F 401 A 1 HETATM 7 C C2 P6F . . . B 2 -27.494 1.331 -10.75 1 41.91 ? C2 P6F 401 A 1 HETATM 8 C C3 P6F . . . B 2 -28.019 2.746 -10.746 1 48.94 ? C3 P6F 401 A 1 HETATM 9 O O3 P6F . . . B 2 -28.205 3.185 -9.395 1 48.28 ? O3 P6F 401 A 1 HETATM 10 C C4 P6F . . . B 2 -27.053 3.686 -11.485 1 56.45 ? C4 P6F 401 A 1 HETATM 11 O O4 P6F . . . B 2 -25.795 3.774 -10.801 1 57.06 ? O4 P6F 401 A 1 HETATM 12 C C5 P6F . . . B 2 -27.65 5.088 -11.648 1 60.87 ? C5 P6F 401 A 1 HETATM 13 O O5 P6F . . . B 2 -28.57 5.07 -12.751 1 60.27 ? O5 P6F 401 A 1 HETATM 14 C C6 P6F . . . B 2 -26.588 6.172 -11.871 1 64.33 ? C6 P6F 401 A 1 HETATM 15 O O6 P6F . . . B 2 -27.192 7.471 -11.945 1 67.06 ? O6 P6F 401 A 1 HETATM 16 P P2 P6F . . . B 2 -26.342 8.846 -12.091 1 68.1 ? P2 P6F 401 A 1 HETATM 17 O O4P P6F . . . B 2 -25.836 8.817 -13.517 1 69.2 ? O4P P6F 401 A 1 HETATM 18 O O5P P6F . . . B 2 -27.358 9.932 -11.824 1 66.59 ? O5P P6F 401 A 1 HETATM 19 O O6P P6F . . . B 2 -25.247 8.763 -11.051 1 66.64 ? O6P P6F 401 A 1 HETATM 20 H H1 P6F . . . B 2 -28.12 -0.406 -11.834 1 52.35 ? H1 P6F 401 A 1 HETATM 21 H H1A P6F . . . B 2 -26.485 0.128 -12.206 1 52.35 ? H1A P6F 401 A 1 HETATM 22 H H3 P6F . . . B 2 -28.985 2.764 -11.27 1 58.73 ? H3 P6F 401 A 1 HETATM 23 H HO3 P6F . . . B 2 -28.839 2.605 -8.951 1 57.94 ? HO3 P6F 401 A 1 HETATM 24 H H4 P6F . . . B 2 -26.885 3.273 -12.489 1 67.74 ? H4 P6F 401 A 1 HETATM 25 H HO4 P6F . . . B 2 -25.393 2.896 -10.75 1 68.47 ? HO4 P6F 401 A 1 HETATM 26 H H5 P6F . . . B 2 -28.198 5.334 -10.727 1 73.04 ? H5 P6F 401 A 1 HETATM 27 H HO5 P6F . . . B 2 -28.954 5.95 -12.865 1 72.32 ? HO5 P6F 401 A 1 HETATM 28 H H6 P6F . . . B 2 -25.868 6.15 -11.05 1 77.2 ? H6 P6F 401 A 1 HETATM 29 H H6A P6F . . . B 2 -26.047 5.967 -12.797 1 77.2 ? H6A P6F 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #