data_5TKU # _model_server_result.job_id qa80RDYY_uKrhh4MidRcXw _model_server_result.datetime_utc '2024-12-01 07:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":311}' # _entry.id 5TKU # _exptl.entry_id 5TKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TKU _cell.length_a 78.7 _cell.length_b 78.7 _cell.length_c 105.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 157 n n C1 C2 EDO sing 158 n n C1 H11 EDO sing 159 n n C1 H12 EDO sing 160 n n O1 HO1 EDO sing 161 n n C2 O2 EDO sing 162 n n C2 H21 EDO sing 163 n n C2 H22 EDO sing 164 n n O2 HO2 EDO sing 165 n n # _atom_sites.entry_id 5TKU _atom_sites.fract_transf_matrix[1][1] 0.012706 _atom_sites.fract_transf_matrix[1][2] 0.007336 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7DK A 1 301 1 7DK LG1 . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 EDO A 1 304 3 EDO EDO . F 4 EDO A 1 305 4 EDO EDO . G 4 EDO A 1 306 9 EDO EDO . H 4 EDO A 1 307 10 EDO EDO . I 4 EDO A 1 308 11 EDO EDO . J 4 EDO A 1 309 13 EDO EDO . K 4 EDO A 1 310 15 EDO EDO . L 4 EDO A 1 311 16 EDO EDO . M 4 EDO A 1 312 17 EDO EDO . N 4 EDO A 1 313 18 EDO EDO . O 5 HOH A 1 401 196 HOH HOH . O 5 HOH A 2 402 124 HOH HOH . O 5 HOH A 3 403 75 HOH HOH . O 5 HOH A 4 404 170 HOH HOH . O 5 HOH A 5 405 191 HOH HOH . O 5 HOH A 6 406 129 HOH HOH . O 5 HOH A 7 407 211 HOH HOH . O 5 HOH A 8 408 125 HOH HOH . O 5 HOH A 9 409 3 HOH HOH . O 5 HOH A 10 410 91 HOH HOH . O 5 HOH A 11 411 135 HOH HOH . O 5 HOH A 12 412 38 HOH HOH . O 5 HOH A 13 413 201 HOH HOH . O 5 HOH A 14 414 130 HOH HOH . O 5 HOH A 15 415 216 HOH HOH . O 5 HOH A 16 416 28 HOH HOH . O 5 HOH A 17 417 17 HOH HOH . O 5 HOH A 18 418 14 HOH HOH . O 5 HOH A 19 419 100 HOH HOH . O 5 HOH A 20 420 16 HOH HOH . O 5 HOH A 21 421 76 HOH HOH . O 5 HOH A 22 422 27 HOH HOH . O 5 HOH A 23 423 90 HOH HOH . O 5 HOH A 24 424 111 HOH HOH . O 5 HOH A 25 425 118 HOH HOH . O 5 HOH A 26 426 15 HOH HOH . O 5 HOH A 27 427 8 HOH HOH . O 5 HOH A 28 428 45 HOH HOH . O 5 HOH A 29 429 30 HOH HOH . O 5 HOH A 30 430 52 HOH HOH . O 5 HOH A 31 431 81 HOH HOH . O 5 HOH A 32 432 103 HOH HOH . O 5 HOH A 33 433 56 HOH HOH . O 5 HOH A 34 434 71 HOH HOH . O 5 HOH A 35 435 68 HOH HOH . O 5 HOH A 36 436 163 HOH HOH . O 5 HOH A 37 437 93 HOH HOH . O 5 HOH A 38 438 5 HOH HOH . O 5 HOH A 39 439 198 HOH HOH . O 5 HOH A 40 440 23 HOH HOH . O 5 HOH A 41 441 207 HOH HOH . O 5 HOH A 42 442 26 HOH HOH . O 5 HOH A 43 443 2 HOH HOH . O 5 HOH A 44 444 20 HOH HOH . O 5 HOH A 45 445 145 HOH HOH . O 5 HOH A 46 446 194 HOH HOH . O 5 HOH A 47 447 128 HOH HOH . O 5 HOH A 48 448 102 HOH HOH . O 5 HOH A 49 449 65 HOH HOH . O 5 HOH A 50 450 136 HOH HOH . O 5 HOH A 51 451 157 HOH HOH . O 5 HOH A 52 452 126 HOH HOH . O 5 HOH A 53 453 58 HOH HOH . O 5 HOH A 54 454 47 HOH HOH . O 5 HOH A 55 455 208 HOH HOH . O 5 HOH A 56 456 12 HOH HOH . O 5 HOH A 57 457 98 HOH HOH . O 5 HOH A 58 458 13 HOH HOH . O 5 HOH A 59 459 226 HOH HOH . O 5 HOH A 60 460 44 HOH HOH . O 5 HOH A 61 461 33 HOH HOH . O 5 HOH A 62 462 132 HOH HOH . O 5 HOH A 63 463 70 HOH HOH . O 5 HOH A 64 464 214 HOH HOH . O 5 HOH A 65 465 154 HOH HOH . O 5 HOH A 66 466 83 HOH HOH . O 5 HOH A 67 467 193 HOH HOH . O 5 HOH A 68 468 21 HOH HOH . O 5 HOH A 69 469 18 HOH HOH . O 5 HOH A 70 470 80 HOH HOH . O 5 HOH A 71 471 141 HOH HOH . O 5 HOH A 72 472 40 HOH HOH . O 5 HOH A 73 473 183 HOH HOH . O 5 HOH A 74 474 25 HOH HOH . O 5 HOH A 75 475 176 HOH HOH . O 5 HOH A 76 476 19 HOH HOH . O 5 HOH A 77 477 99 HOH HOH . O 5 HOH A 78 478 10 HOH HOH . O 5 HOH A 79 479 197 HOH HOH . O 5 HOH A 80 480 227 HOH HOH . O 5 HOH A 81 481 35 HOH HOH . O 5 HOH A 82 482 87 HOH HOH . O 5 HOH A 83 483 167 HOH HOH . O 5 HOH A 84 484 94 HOH HOH . O 5 HOH A 85 485 218 HOH HOH . O 5 HOH A 86 486 6 HOH HOH . O 5 HOH A 87 487 4 HOH HOH . O 5 HOH A 88 488 22 HOH HOH . O 5 HOH A 89 489 29 HOH HOH . O 5 HOH A 90 490 165 HOH HOH . O 5 HOH A 91 491 127 HOH HOH . O 5 HOH A 92 492 109 HOH HOH . O 5 HOH A 93 493 55 HOH HOH . O 5 HOH A 94 494 205 HOH HOH . O 5 HOH A 95 495 228 HOH HOH . O 5 HOH A 96 496 24 HOH HOH . O 5 HOH A 97 497 182 HOH HOH . O 5 HOH A 98 498 181 HOH HOH . O 5 HOH A 99 499 140 HOH HOH . O 5 HOH A 100 500 7 HOH HOH . O 5 HOH A 101 501 223 HOH HOH . O 5 HOH A 102 502 192 HOH HOH . O 5 HOH A 103 503 64 HOH HOH . O 5 HOH A 104 504 144 HOH HOH . O 5 HOH A 105 505 174 HOH HOH . O 5 HOH A 106 506 73 HOH HOH . O 5 HOH A 107 507 119 HOH HOH . O 5 HOH A 108 508 84 HOH HOH . O 5 HOH A 109 509 199 HOH HOH . O 5 HOH A 110 510 82 HOH HOH . O 5 HOH A 111 511 31 HOH HOH . O 5 HOH A 112 512 41 HOH HOH . O 5 HOH A 113 513 69 HOH HOH . O 5 HOH A 114 514 195 HOH HOH . O 5 HOH A 115 515 143 HOH HOH . O 5 HOH A 116 516 161 HOH HOH . O 5 HOH A 117 517 53 HOH HOH . O 5 HOH A 118 518 115 HOH HOH . O 5 HOH A 119 519 79 HOH HOH . O 5 HOH A 120 520 172 HOH HOH . O 5 HOH A 121 521 168 HOH HOH . O 5 HOH A 122 522 36 HOH HOH . O 5 HOH A 123 523 189 HOH HOH . O 5 HOH A 124 524 51 HOH HOH . O 5 HOH A 125 525 209 HOH HOH . O 5 HOH A 126 526 110 HOH HOH . O 5 HOH A 127 527 46 HOH HOH . O 5 HOH A 128 528 210 HOH HOH . O 5 HOH A 129 529 108 HOH HOH . O 5 HOH A 130 530 11 HOH HOH . O 5 HOH A 131 531 116 HOH HOH . O 5 HOH A 132 532 72 HOH HOH . O 5 HOH A 133 533 37 HOH HOH . O 5 HOH A 134 534 63 HOH HOH . O 5 HOH A 135 535 88 HOH HOH . O 5 HOH A 136 536 164 HOH HOH . O 5 HOH A 137 537 101 HOH HOH . O 5 HOH A 138 538 155 HOH HOH . O 5 HOH A 139 539 57 HOH HOH . O 5 HOH A 140 540 43 HOH HOH . O 5 HOH A 141 541 114 HOH HOH . O 5 HOH A 142 542 121 HOH HOH . O 5 HOH A 143 543 113 HOH HOH . O 5 HOH A 144 544 146 HOH HOH . O 5 HOH A 145 545 152 HOH HOH . O 5 HOH A 146 546 149 HOH HOH . O 5 HOH A 147 547 9 HOH HOH . O 5 HOH A 148 548 78 HOH HOH . O 5 HOH A 149 549 134 HOH HOH . O 5 HOH A 150 550 120 HOH HOH . O 5 HOH A 151 551 54 HOH HOH . O 5 HOH A 152 552 95 HOH HOH . O 5 HOH A 153 553 105 HOH HOH . O 5 HOH A 154 554 104 HOH HOH . O 5 HOH A 155 555 123 HOH HOH . O 5 HOH A 156 556 61 HOH HOH . O 5 HOH A 157 557 59 HOH HOH . O 5 HOH A 158 558 160 HOH HOH . O 5 HOH A 159 559 74 HOH HOH . O 5 HOH A 160 560 60 HOH HOH . O 5 HOH A 161 561 66 HOH HOH . O 5 HOH A 162 562 92 HOH HOH . O 5 HOH A 163 563 48 HOH HOH . O 5 HOH A 164 564 49 HOH HOH . O 5 HOH A 165 565 185 HOH HOH . O 5 HOH A 166 566 204 HOH HOH . O 5 HOH A 167 567 77 HOH HOH . O 5 HOH A 168 568 179 HOH HOH . O 5 HOH A 169 569 67 HOH HOH . O 5 HOH A 170 570 156 HOH HOH . O 5 HOH A 171 571 89 HOH HOH . O 5 HOH A 172 572 42 HOH HOH . O 5 HOH A 173 573 34 HOH HOH . O 5 HOH A 174 574 150 HOH HOH . O 5 HOH A 175 575 32 HOH HOH . O 5 HOH A 176 576 62 HOH HOH . O 5 HOH A 177 577 138 HOH HOH . O 5 HOH A 178 578 190 HOH HOH . O 5 HOH A 179 579 142 HOH HOH . O 5 HOH A 180 580 106 HOH HOH . O 5 HOH A 181 581 117 HOH HOH . O 5 HOH A 182 582 212 HOH HOH . O 5 HOH A 183 583 213 HOH HOH . O 5 HOH A 184 584 200 HOH HOH . O 5 HOH A 185 585 224 HOH HOH . O 5 HOH A 186 586 86 HOH HOH . O 5 HOH A 187 587 184 HOH HOH . O 5 HOH A 188 588 169 HOH HOH . O 5 HOH A 189 589 148 HOH HOH . O 5 HOH A 190 590 177 HOH HOH . O 5 HOH A 191 591 217 HOH HOH . O 5 HOH A 192 592 39 HOH HOH . O 5 HOH A 193 593 219 HOH HOH . O 5 HOH A 194 594 159 HOH HOH . O 5 HOH A 195 595 137 HOH HOH . O 5 HOH A 196 596 139 HOH HOH . O 5 HOH A 197 597 153 HOH HOH . O 5 HOH A 198 598 122 HOH HOH . O 5 HOH A 199 599 203 HOH HOH . O 5 HOH A 200 600 162 HOH HOH . O 5 HOH A 201 601 112 HOH HOH . O 5 HOH A 202 602 178 HOH HOH . O 5 HOH A 203 603 107 HOH HOH . O 5 HOH A 204 604 131 HOH HOH . O 5 HOH A 205 605 221 HOH HOH . O 5 HOH A 206 606 1 HOH HOH . O 5 HOH A 207 607 85 HOH HOH . O 5 HOH A 208 608 171 HOH HOH . O 5 HOH A 209 609 180 HOH HOH . O 5 HOH A 210 610 151 HOH HOH . O 5 HOH A 211 611 215 HOH HOH . O 5 HOH A 212 612 188 HOH HOH . O 5 HOH A 213 613 96 HOH HOH . O 5 HOH A 214 614 225 HOH HOH . O 5 HOH A 215 615 158 HOH HOH . O 5 HOH A 216 616 147 HOH HOH . O 5 HOH A 217 617 175 HOH HOH . O 5 HOH A 218 618 222 HOH HOH . O 5 HOH A 219 619 187 HOH HOH . O 5 HOH A 220 620 173 HOH HOH . O 5 HOH A 221 621 206 HOH HOH . O 5 HOH A 222 622 50 HOH HOH . O 5 HOH A 223 623 186 HOH HOH . O 5 HOH A 224 624 202 HOH HOH . O 5 HOH A 225 625 97 HOH HOH . O 5 HOH A 226 626 166 HOH HOH . O 5 HOH A 227 627 133 HOH HOH . O 5 HOH A 228 628 229 HOH HOH . O 5 HOH A 229 629 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 4 20.175 -22.69 25.505 1 41.68 ? C1 EDO 311 A 1 HETATM 2 O O1 EDO . . . L 4 20.074 -23.167 24.178 1 46.26 ? O1 EDO 311 A 1 HETATM 3 C C2 EDO . . . L 4 21.645 -22.8 25.958 1 38.03 ? C2 EDO 311 A 1 HETATM 4 O O2 EDO . . . L 4 22.416 -21.918 25.195 1 35.53 ? O2 EDO 311 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #