data_5TKY # _model_server_result.job_id hykpcbFD7M0RNMdA-wY5-g _model_server_result.datetime_utc '2024-11-25 18:50:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":700}' # _entry.id 5TKY # _exptl.entry_id 5TKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.22 _cell.angle_gamma 90 _cell.entry_id 5TKY _cell.length_a 66.93 _cell.length_b 128.24 _cell.length_c 79.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 51 1_555 A SG CYS 541 A CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 58 B CYS 51 1_555 B SG CYS 541 B CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 C O2G ATP . A ATP 700 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 C O2B ATP . A ATP 700 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc3 D MG MG . A MG 701 1_555 G O HOH . A HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 D MG MG . A MG 701 1_555 G O HOH . A HOH 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 D MG MG . A MG 701 1_555 G O HOH . A HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc6 D MG MG . A MG 701 1_555 G O HOH . A HOH 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc7 E O2G ATP . B ATP 700 1_555 F MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc8 E O1B ATP . B ATP 700 1_555 F MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc9 F MG MG . B MG 701 1_555 H O HOH . B HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 F MG MG . B MG 701 1_555 H O HOH . B HOH 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc11 F MG MG . B MG 701 1_555 H O HOH . B HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc12 F MG MG . B MG 701 1_555 H O HOH . B HOH 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5TKY _atom_sites.fract_transf_matrix[1][1] 0.014941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000841 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 700 700 ATP ATP . D 3 MG A 1 701 701 MG MG . E 2 ATP B 1 700 700 ATP ATP . F 3 MG B 1 701 701 MG MG . G 4 HOH A 1 801 58 HOH HOH . G 4 HOH A 2 802 61 HOH HOH . G 4 HOH A 3 803 2010 HOH HOH . G 4 HOH A 4 804 13 HOH HOH . G 4 HOH A 5 805 32 HOH HOH . G 4 HOH A 6 806 35 HOH HOH . G 4 HOH A 7 807 84 HOH HOH . G 4 HOH A 8 808 2008 HOH HOH . G 4 HOH A 9 809 29 HOH HOH . G 4 HOH A 10 810 59 HOH HOH . G 4 HOH A 11 811 19 HOH HOH . G 4 HOH A 12 812 2009 HOH HOH . G 4 HOH A 13 813 26 HOH HOH . G 4 HOH A 14 814 8 HOH HOH . G 4 HOH A 15 815 11 HOH HOH . G 4 HOH A 16 816 68 HOH HOH . G 4 HOH A 17 817 2011 HOH HOH . G 4 HOH A 18 818 60 HOH HOH . G 4 HOH A 19 819 44 HOH HOH . G 4 HOH A 20 820 6 HOH HOH . G 4 HOH A 21 821 55 HOH HOH . G 4 HOH A 22 822 27 HOH HOH . G 4 HOH A 23 823 25 HOH HOH . G 4 HOH A 24 824 78 HOH HOH . G 4 HOH A 25 825 15 HOH HOH . G 4 HOH A 26 826 16 HOH HOH . G 4 HOH A 27 827 50 HOH HOH . G 4 HOH A 28 828 37 HOH HOH . G 4 HOH A 29 829 40 HOH HOH . G 4 HOH A 30 830 48 HOH HOH . G 4 HOH A 31 831 53 HOH HOH . G 4 HOH A 32 832 34 HOH HOH . G 4 HOH A 33 833 65 HOH HOH . G 4 HOH A 34 834 28 HOH HOH . G 4 HOH A 35 835 49 HOH HOH . G 4 HOH A 36 836 72 HOH HOH . G 4 HOH A 37 837 70 HOH HOH . G 4 HOH A 38 838 54 HOH HOH . G 4 HOH A 39 839 63 HOH HOH . G 4 HOH A 40 840 23 HOH HOH . G 4 HOH A 41 841 66 HOH HOH . G 4 HOH A 42 842 73 HOH HOH . G 4 HOH A 43 843 71 HOH HOH . H 4 HOH B 1 801 62 HOH HOH . H 4 HOH B 2 802 12 HOH HOH . H 4 HOH B 3 803 56 HOH HOH . H 4 HOH B 4 804 2010 HOH HOH . H 4 HOH B 5 805 69 HOH HOH . H 4 HOH B 6 806 33 HOH HOH . H 4 HOH B 7 807 52 HOH HOH . H 4 HOH B 8 808 43 HOH HOH . H 4 HOH B 9 809 2008 HOH HOH . H 4 HOH B 10 810 2011 HOH HOH . H 4 HOH B 11 811 83 HOH HOH . H 4 HOH B 12 812 7 HOH HOH . H 4 HOH B 13 813 79 HOH HOH . H 4 HOH B 14 814 2009 HOH HOH . H 4 HOH B 15 815 38 HOH HOH . H 4 HOH B 16 816 22 HOH HOH . H 4 HOH B 17 817 10 HOH HOH . H 4 HOH B 18 818 20 HOH HOH . H 4 HOH B 19 819 47 HOH HOH . H 4 HOH B 20 820 77 HOH HOH . H 4 HOH B 21 821 31 HOH HOH . H 4 HOH B 22 822 80 HOH HOH . H 4 HOH B 23 823 18 HOH HOH . H 4 HOH B 24 824 46 HOH HOH . H 4 HOH B 25 825 21 HOH HOH . H 4 HOH B 26 826 24 HOH HOH . H 4 HOH B 27 827 45 HOH HOH . H 4 HOH B 28 828 64 HOH HOH . H 4 HOH B 29 829 41 HOH HOH . H 4 HOH B 30 830 76 HOH HOH . H 4 HOH B 31 831 74 HOH HOH . H 4 HOH B 32 832 82 HOH HOH . H 4 HOH B 33 833 14 HOH HOH . H 4 HOH B 34 834 42 HOH HOH . H 4 HOH B 35 835 9 HOH HOH . H 4 HOH B 36 836 81 HOH HOH . H 4 HOH B 37 837 67 HOH HOH . H 4 HOH B 38 838 57 HOH HOH . H 4 HOH B 39 839 36 HOH HOH . H 4 HOH B 40 840 75 HOH HOH . H 4 HOH B 41 841 30 HOH HOH . H 4 HOH B 42 842 86 HOH HOH . H 4 HOH B 43 843 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 -71.161 14.869 180.838 1 40.59 ? PG ATP 700 A 1 HETATM 2 O O1G ATP . . . C 2 -72.25 13.955 180.339 1 43.56 ? O1G ATP 700 A 1 HETATM 3 O O2G ATP . . . C 2 -69.815 14.201 180.991 1 38.04 ? O2G ATP 700 A 1 HETATM 4 O O3G ATP . . . C 2 -71.549 15.747 182.002 1 38.33 ? O3G ATP 700 A 1 HETATM 5 P PB ATP . . . C 2 -70.593 15.515 178.127 1 38.16 ? PB ATP 700 A 1 HETATM 6 O O1B ATP . . . C 2 -71.88 15.371 177.349 1 37.94 ? O1B ATP 700 A 1 HETATM 7 O O2B ATP . . . C 2 -69.575 14.401 178.133 1 35.87 ? O2B ATP 700 A 1 HETATM 8 O O3B ATP . . . C 2 -70.935 15.929 179.648 1 45.28 ? O3B ATP 700 A 1 HETATM 9 P PA ATP . . . C 2 -68.428 16.918 176.971 1 36.41 ? PA ATP 700 A 1 HETATM 10 O O1A ATP . . . C 2 -68.567 16.435 175.546 1 47.71 ? O1A ATP 700 A 1 HETATM 11 O O2A ATP . . . C 2 -67.428 16.26 177.892 1 39.54 ? O2A ATP 700 A 1 HETATM 12 O O3A ATP . . . C 2 -69.873 16.881 177.677 1 35.29 ? O3A ATP 700 A 1 HETATM 13 O O5' ATP . . . C 2 -68.137 18.502 176.972 1 33.65 ? O5' ATP 700 A 1 HETATM 14 C C5' ATP . . . C 2 -68.987 19.361 176.218 1 32.56 ? C5' ATP 700 A 1 HETATM 15 C C4' ATP . . . C 2 -69.2 20.68 176.948 1 37.6 ? C4' ATP 700 A 1 HETATM 16 O O4' ATP . . . C 2 -67.968 21.393 177.07 1 39.34 ? O4' ATP 700 A 1 HETATM 17 C C3' ATP . . . C 2 -70.169 21.563 176.18 1 51.43 ? C3' ATP 700 A 1 HETATM 18 O O3' ATP . . . C 2 -71.373 21.736 176.933 1 52.23 ? O3' ATP 700 A 1 HETATM 19 C C2' ATP . . . C 2 -69.472 22.895 175.991 1 42.54 ? C2' ATP 700 A 1 HETATM 20 O O2' ATP . . . C 2 -70.256 23.933 176.584 1 56.84 ? O2' ATP 700 A 1 HETATM 21 C C1' ATP . . . C 2 -68.131 22.763 176.695 1 44.36 ? C1' ATP 700 A 1 HETATM 22 N N9 ATP . . . C 2 -67.036 23.143 175.77 1 36.69 ? N9 ATP 700 A 1 HETATM 23 C C8 ATP . . . C 2 -66.708 22.492 174.638 1 48.77 ? C8 ATP 700 A 1 HETATM 24 N N7 ATP . . . C 2 -65.661 23.089 174.014 1 48.41 ? N7 ATP 700 A 1 HETATM 25 C C5 ATP . . . C 2 -65.301 24.152 174.758 1 41.86 ? C5 ATP 700 A 1 HETATM 26 C C6 ATP . . . C 2 -64.271 25.214 174.676 1 45.66 ? C6 ATP 700 A 1 HETATM 27 N N6 ATP . . . C 2 -63.392 25.263 173.646 1 43.1 ? N6 ATP 700 A 1 HETATM 28 N N1 ATP . . . C 2 -64.242 26.133 175.666 1 47.99 ? N1 ATP 700 A 1 HETATM 29 C C2 ATP . . . C 2 -65.111 26.097 176.695 1 36.78 ? C2 ATP 700 A 1 HETATM 30 N N3 ATP . . . C 2 -66.068 25.165 176.833 1 39.95 ? N3 ATP 700 A 1 HETATM 31 C C4 ATP . . . C 2 -66.213 24.183 175.913 1 37.34 ? C4 ATP 700 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #