data_5TL8
#
_model_server_result.job_id            iFcQSogdbrQfdFTQRZDqAA 
_model_server_result.datetime_utc      '2024-11-26 14:28:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tl8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
#
_entry.id    5TL8 
#
_exptl.entry_id    5TL8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.07 
_cell.angle_gamma         90 
_cell.entry_id            5TL8 
_cell.length_a            120.03 
_cell.length_b            55.04 
_cell.length_c            71.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TL8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 345 A GLU 370 1_555 A N CSO 346 A CSO 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C CSO 346 A CSO 371 1_555 A N GLU 347 A GLU 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C ARG 366 A ARG 391 1_555 A N CSO 367 A CSO 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C CSO 367 A CSO 392 1_555 A N THR 368 A THR 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
metalc ? metalc1 A OG SER 27 A SER 52 1_555 I CA CA . A CA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? 
metalc ? metalc2 A O LEU 59 A LEU 84 1_555 J CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc3 A SG CYS 405 A CYS 430 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc4 B FE HEM . A HEM 501 1_555 C NBD X2N . A X2N 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 97 n n 
C1 C2 EDO sing 98 n n 
C1 H11 EDO sing 99 n n 
C1 H12 EDO sing 100 n n 
O1 HO1 EDO sing 101 n n 
C2 O2 EDO sing 102 n n 
C2 H21 EDO sing 103 n n 
C2 H22 EDO sing 104 n n 
O2 HO2 EDO sing 105 n n 
#
_atom_sites.entry_id                     5TL8 
_atom_sites.fract_transf_matrix[1][1]    0.008331 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00148 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018169 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014181 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 501 1 HEM HEM . 
C 3 X2N A 1 502 1 X2N X2N . 
D 4 EDO A 1 503 1 EDO EDO . 
E 4 EDO A 1 504 2 EDO EDO . 
F 4 EDO A 1 505 3 EDO EDO . 
G 4 EDO A 1 506 4 EDO EDO . 
H 4 EDO A 1 507 5 EDO EDO . 
I 5 CA A 1 508 1 CA CA . 
J 5 CA A 1 509 1 CA CA . 
K 6 HOH A 1 601 81 HOH HOH . 
K 6 HOH A 2 602 149 HOH HOH . 
K 6 HOH A 3 603 103 HOH HOH . 
K 6 HOH A 4 604 145 HOH HOH . 
K 6 HOH A 5 605 122 HOH HOH . 
K 6 HOH A 6 606 155 HOH HOH . 
K 6 HOH A 7 607 135 HOH HOH . 
K 6 HOH A 8 608 69 HOH HOH . 
K 6 HOH A 9 609 167 HOH HOH . 
K 6 HOH A 10 610 31 HOH HOH . 
K 6 HOH A 11 611 52 HOH HOH . 
K 6 HOH A 12 612 94 HOH HOH . 
K 6 HOH A 13 613 40 HOH HOH . 
K 6 HOH A 14 614 7 HOH HOH . 
K 6 HOH A 15 615 59 HOH HOH . 
K 6 HOH A 16 616 148 HOH HOH . 
K 6 HOH A 17 617 45 HOH HOH . 
K 6 HOH A 18 618 82 HOH HOH . 
K 6 HOH A 19 619 3 HOH HOH . 
K 6 HOH A 20 620 42 HOH HOH . 
K 6 HOH A 21 621 101 HOH HOH . 
K 6 HOH A 22 622 20 HOH HOH . 
K 6 HOH A 23 623 133 HOH HOH . 
K 6 HOH A 24 624 28 HOH HOH . 
K 6 HOH A 25 625 151 HOH HOH . 
K 6 HOH A 26 626 182 HOH HOH . 
K 6 HOH A 27 627 12 HOH HOH . 
K 6 HOH A 28 628 75 HOH HOH . 
K 6 HOH A 29 629 123 HOH HOH . 
K 6 HOH A 30 630 68 HOH HOH . 
K 6 HOH A 31 631 10 HOH HOH . 
K 6 HOH A 32 632 92 HOH HOH . 
K 6 HOH A 33 633 23 HOH HOH . 
K 6 HOH A 34 634 34 HOH HOH . 
K 6 HOH A 35 635 9 HOH HOH . 
K 6 HOH A 36 636 26 HOH HOH . 
K 6 HOH A 37 637 41 HOH HOH . 
K 6 HOH A 38 638 56 HOH HOH . 
K 6 HOH A 39 639 86 HOH HOH . 
K 6 HOH A 40 640 79 HOH HOH . 
K 6 HOH A 41 641 87 HOH HOH . 
K 6 HOH A 42 642 38 HOH HOH . 
K 6 HOH A 43 643 6 HOH HOH . 
K 6 HOH A 44 644 85 HOH HOH . 
K 6 HOH A 45 645 64 HOH HOH . 
K 6 HOH A 46 646 144 HOH HOH . 
K 6 HOH A 47 647 143 HOH HOH . 
K 6 HOH A 48 648 112 HOH HOH . 
K 6 HOH A 49 649 44 HOH HOH . 
K 6 HOH A 50 650 113 HOH HOH . 
K 6 HOH A 51 651 2 HOH HOH . 
K 6 HOH A 52 652 130 HOH HOH . 
K 6 HOH A 53 653 51 HOH HOH . 
K 6 HOH A 54 654 157 HOH HOH . 
K 6 HOH A 55 655 131 HOH HOH . 
K 6 HOH A 56 656 177 HOH HOH . 
K 6 HOH A 57 657 8 HOH HOH . 
K 6 HOH A 58 658 27 HOH HOH . 
K 6 HOH A 59 659 54 HOH HOH . 
K 6 HOH A 60 660 83 HOH HOH . 
K 6 HOH A 61 661 70 HOH HOH . 
K 6 HOH A 62 662 108 HOH HOH . 
K 6 HOH A 63 663 105 HOH HOH . 
K 6 HOH A 64 664 97 HOH HOH . 
K 6 HOH A 65 665 37 HOH HOH . 
K 6 HOH A 66 666 109 HOH HOH . 
K 6 HOH A 67 667 76 HOH HOH . 
K 6 HOH A 68 668 93 HOH HOH . 
K 6 HOH A 69 669 58 HOH HOH . 
K 6 HOH A 70 670 47 HOH HOH . 
K 6 HOH A 71 671 173 HOH HOH . 
K 6 HOH A 72 672 152 HOH HOH . 
K 6 HOH A 73 673 73 HOH HOH . 
K 6 HOH A 74 674 179 HOH HOH . 
K 6 HOH A 75 675 153 HOH HOH . 
K 6 HOH A 76 676 49 HOH HOH . 
K 6 HOH A 77 677 178 HOH HOH . 
K 6 HOH A 78 678 48 HOH HOH . 
K 6 HOH A 79 679 90 HOH HOH . 
K 6 HOH A 80 680 57 HOH HOH . 
K 6 HOH A 81 681 66 HOH HOH . 
K 6 HOH A 82 682 50 HOH HOH . 
K 6 HOH A 83 683 140 HOH HOH . 
K 6 HOH A 84 684 4 HOH HOH . 
K 6 HOH A 85 685 29 HOH HOH . 
K 6 HOH A 86 686 117 HOH HOH . 
K 6 HOH A 87 687 107 HOH HOH . 
K 6 HOH A 88 688 89 HOH HOH . 
K 6 HOH A 89 689 161 HOH HOH . 
K 6 HOH A 90 690 36 HOH HOH . 
K 6 HOH A 91 691 67 HOH HOH . 
K 6 HOH A 92 692 16 HOH HOH . 
K 6 HOH A 93 693 84 HOH HOH . 
K 6 HOH A 94 694 25 HOH HOH . 
K 6 HOH A 95 695 170 HOH HOH . 
K 6 HOH A 96 696 74 HOH HOH . 
K 6 HOH A 97 697 55 HOH HOH . 
K 6 HOH A 98 698 96 HOH HOH . 
K 6 HOH A 99 699 62 HOH HOH . 
K 6 HOH A 100 700 61 HOH HOH . 
K 6 HOH A 101 701 146 HOH HOH . 
K 6 HOH A 102 702 124 HOH HOH . 
K 6 HOH A 103 703 60 HOH HOH . 
K 6 HOH A 104 704 80 HOH HOH . 
K 6 HOH A 105 705 169 HOH HOH . 
K 6 HOH A 106 706 150 HOH HOH . 
K 6 HOH A 107 707 147 HOH HOH . 
K 6 HOH A 108 708 95 HOH HOH . 
K 6 HOH A 109 709 1 HOH HOH . 
K 6 HOH A 110 710 132 HOH HOH . 
K 6 HOH A 111 711 71 HOH HOH . 
K 6 HOH A 112 712 181 HOH HOH . 
K 6 HOH A 113 713 114 HOH HOH . 
K 6 HOH A 114 714 110 HOH HOH . 
K 6 HOH A 115 715 72 HOH HOH . 
K 6 HOH A 116 716 43 HOH HOH . 
K 6 HOH A 117 717 111 HOH HOH . 
K 6 HOH A 118 718 158 HOH HOH . 
K 6 HOH A 119 719 46 HOH HOH . 
K 6 HOH A 120 720 35 HOH HOH . 
K 6 HOH A 121 721 100 HOH HOH . 
K 6 HOH A 122 722 129 HOH HOH . 
K 6 HOH A 123 723 14 HOH HOH . 
K 6 HOH A 124 724 139 HOH HOH . 
K 6 HOH A 125 725 39 HOH HOH . 
K 6 HOH A 126 726 165 HOH HOH . 
K 6 HOH A 127 727 127 HOH HOH . 
K 6 HOH A 128 728 30 HOH HOH . 
K 6 HOH A 129 729 138 HOH HOH . 
K 6 HOH A 130 730 98 HOH HOH . 
K 6 HOH A 131 731 33 HOH HOH . 
K 6 HOH A 132 732 126 HOH HOH . 
K 6 HOH A 133 733 15 HOH HOH . 
K 6 HOH A 134 734 65 HOH HOH . 
K 6 HOH A 135 735 78 HOH HOH . 
K 6 HOH A 136 736 102 HOH HOH . 
K 6 HOH A 137 737 120 HOH HOH . 
K 6 HOH A 138 738 88 HOH HOH . 
K 6 HOH A 139 739 32 HOH HOH . 
K 6 HOH A 140 740 128 HOH HOH . 
K 6 HOH A 141 741 166 HOH HOH . 
K 6 HOH A 142 742 137 HOH HOH . 
K 6 HOH A 143 743 180 HOH HOH . 
K 6 HOH A 144 744 21 HOH HOH . 
K 6 HOH A 145 745 159 HOH HOH . 
K 6 HOH A 146 746 156 HOH HOH . 
K 6 HOH A 147 747 91 HOH HOH . 
K 6 HOH A 148 748 116 HOH HOH . 
K 6 HOH A 149 749 136 HOH HOH . 
K 6 HOH A 150 750 163 HOH HOH . 
K 6 HOH A 151 751 160 HOH HOH . 
K 6 HOH A 152 752 119 HOH HOH . 
K 6 HOH A 153 753 172 HOH HOH . 
K 6 HOH A 154 754 141 HOH HOH . 
K 6 HOH A 155 755 19 HOH HOH . 
K 6 HOH A 156 756 171 HOH HOH . 
K 6 HOH A 157 757 63 HOH HOH . 
K 6 HOH A 158 758 121 HOH HOH . 
K 6 HOH A 159 759 118 HOH HOH . 
K 6 HOH A 160 760 175 HOH HOH . 
K 6 HOH A 161 761 104 HOH HOH . 
K 6 HOH A 162 762 115 HOH HOH . 
K 6 HOH A 163 763 154 HOH HOH . 
K 6 HOH A 164 764 134 HOH HOH . 
K 6 HOH A 165 765 164 HOH HOH . 
K 6 HOH A 166 766 176 HOH HOH . 
K 6 HOH A 167 767 168 HOH HOH . 
K 6 HOH A 168 768 99 HOH HOH . 
K 6 HOH A 169 769 125 HOH HOH . 
K 6 HOH A 170 770 142 HOH HOH . 
K 6 HOH A 171 771 106 HOH HOH . 
K 6 HOH A 172 772 174 HOH HOH . 
K 6 HOH A 173 773 11 HOH HOH . 
K 6 HOH A 174 774 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 19.827 51.12 57.905 1 59.61 ? C1 EDO 506 A 1 
HETATM 2 O O1 EDO . . . G 4 18.757 51.937 58.391 1 57.72 ? O1 EDO 506 A 1 
HETATM 3 C C2 EDO . . . G 4 20.775 50.734 59.016 1 59.06 ? C2 EDO 506 A 1 
HETATM 4 O O2 EDO . . . G 4 22.045 50.458 58.447 1 57.15 ? O2 EDO 506 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#