data_5TL8 # _model_server_result.job_id 3HqhRlPIm-h0gjsoMuk10g _model_server_result.datetime_utc '2024-11-30 00:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tl8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 5TL8 # _exptl.entry_id 5TL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.07 _cell.angle_gamma 90 _cell.entry_id 5TL8 _cell.length_a 120.03 _cell.length_b 55.04 _cell.length_c 71.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 345 A GLU 370 1_555 A N CSO 346 A CSO 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSO 346 A CSO 371 1_555 A N GLU 347 A GLU 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C ARG 366 A ARG 391 1_555 A N CSO 367 A CSO 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CSO 367 A CSO 392 1_555 A N THR 368 A THR 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? metalc ? metalc1 A OG SER 27 A SER 52 1_555 I CA CA . A CA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc2 A O LEU 59 A LEU 84 1_555 J CA CA . A CA 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc3 A SG CYS 405 A CYS 430 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc4 B FE HEM . A HEM 501 1_555 C NBD X2N . A X2N 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TL8 _atom_sites.fract_transf_matrix[1][1] 0.008331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00148 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 1 HEM HEM . C 3 X2N A 1 502 1 X2N X2N . D 4 EDO A 1 503 1 EDO EDO . E 4 EDO A 1 504 2 EDO EDO . F 4 EDO A 1 505 3 EDO EDO . G 4 EDO A 1 506 4 EDO EDO . H 4 EDO A 1 507 5 EDO EDO . I 5 CA A 1 508 1 CA CA . J 5 CA A 1 509 1 CA CA . K 6 HOH A 1 601 81 HOH HOH . K 6 HOH A 2 602 149 HOH HOH . K 6 HOH A 3 603 103 HOH HOH . K 6 HOH A 4 604 145 HOH HOH . K 6 HOH A 5 605 122 HOH HOH . K 6 HOH A 6 606 155 HOH HOH . K 6 HOH A 7 607 135 HOH HOH . K 6 HOH A 8 608 69 HOH HOH . K 6 HOH A 9 609 167 HOH HOH . K 6 HOH A 10 610 31 HOH HOH . K 6 HOH A 11 611 52 HOH HOH . K 6 HOH A 12 612 94 HOH HOH . K 6 HOH A 13 613 40 HOH HOH . K 6 HOH A 14 614 7 HOH HOH . K 6 HOH A 15 615 59 HOH HOH . K 6 HOH A 16 616 148 HOH HOH . K 6 HOH A 17 617 45 HOH HOH . K 6 HOH A 18 618 82 HOH HOH . K 6 HOH A 19 619 3 HOH HOH . K 6 HOH A 20 620 42 HOH HOH . K 6 HOH A 21 621 101 HOH HOH . K 6 HOH A 22 622 20 HOH HOH . K 6 HOH A 23 623 133 HOH HOH . K 6 HOH A 24 624 28 HOH HOH . K 6 HOH A 25 625 151 HOH HOH . K 6 HOH A 26 626 182 HOH HOH . K 6 HOH A 27 627 12 HOH HOH . K 6 HOH A 28 628 75 HOH HOH . K 6 HOH A 29 629 123 HOH HOH . K 6 HOH A 30 630 68 HOH HOH . K 6 HOH A 31 631 10 HOH HOH . K 6 HOH A 32 632 92 HOH HOH . K 6 HOH A 33 633 23 HOH HOH . K 6 HOH A 34 634 34 HOH HOH . K 6 HOH A 35 635 9 HOH HOH . K 6 HOH A 36 636 26 HOH HOH . K 6 HOH A 37 637 41 HOH HOH . K 6 HOH A 38 638 56 HOH HOH . K 6 HOH A 39 639 86 HOH HOH . K 6 HOH A 40 640 79 HOH HOH . K 6 HOH A 41 641 87 HOH HOH . K 6 HOH A 42 642 38 HOH HOH . K 6 HOH A 43 643 6 HOH HOH . K 6 HOH A 44 644 85 HOH HOH . K 6 HOH A 45 645 64 HOH HOH . K 6 HOH A 46 646 144 HOH HOH . K 6 HOH A 47 647 143 HOH HOH . K 6 HOH A 48 648 112 HOH HOH . K 6 HOH A 49 649 44 HOH HOH . K 6 HOH A 50 650 113 HOH HOH . K 6 HOH A 51 651 2 HOH HOH . K 6 HOH A 52 652 130 HOH HOH . K 6 HOH A 53 653 51 HOH HOH . K 6 HOH A 54 654 157 HOH HOH . K 6 HOH A 55 655 131 HOH HOH . K 6 HOH A 56 656 177 HOH HOH . K 6 HOH A 57 657 8 HOH HOH . K 6 HOH A 58 658 27 HOH HOH . K 6 HOH A 59 659 54 HOH HOH . K 6 HOH A 60 660 83 HOH HOH . K 6 HOH A 61 661 70 HOH HOH . K 6 HOH A 62 662 108 HOH HOH . K 6 HOH A 63 663 105 HOH HOH . K 6 HOH A 64 664 97 HOH HOH . K 6 HOH A 65 665 37 HOH HOH . K 6 HOH A 66 666 109 HOH HOH . K 6 HOH A 67 667 76 HOH HOH . K 6 HOH A 68 668 93 HOH HOH . K 6 HOH A 69 669 58 HOH HOH . K 6 HOH A 70 670 47 HOH HOH . K 6 HOH A 71 671 173 HOH HOH . K 6 HOH A 72 672 152 HOH HOH . K 6 HOH A 73 673 73 HOH HOH . K 6 HOH A 74 674 179 HOH HOH . K 6 HOH A 75 675 153 HOH HOH . K 6 HOH A 76 676 49 HOH HOH . K 6 HOH A 77 677 178 HOH HOH . K 6 HOH A 78 678 48 HOH HOH . K 6 HOH A 79 679 90 HOH HOH . K 6 HOH A 80 680 57 HOH HOH . K 6 HOH A 81 681 66 HOH HOH . K 6 HOH A 82 682 50 HOH HOH . K 6 HOH A 83 683 140 HOH HOH . K 6 HOH A 84 684 4 HOH HOH . K 6 HOH A 85 685 29 HOH HOH . K 6 HOH A 86 686 117 HOH HOH . K 6 HOH A 87 687 107 HOH HOH . K 6 HOH A 88 688 89 HOH HOH . K 6 HOH A 89 689 161 HOH HOH . K 6 HOH A 90 690 36 HOH HOH . K 6 HOH A 91 691 67 HOH HOH . K 6 HOH A 92 692 16 HOH HOH . K 6 HOH A 93 693 84 HOH HOH . K 6 HOH A 94 694 25 HOH HOH . K 6 HOH A 95 695 170 HOH HOH . K 6 HOH A 96 696 74 HOH HOH . K 6 HOH A 97 697 55 HOH HOH . K 6 HOH A 98 698 96 HOH HOH . K 6 HOH A 99 699 62 HOH HOH . K 6 HOH A 100 700 61 HOH HOH . K 6 HOH A 101 701 146 HOH HOH . K 6 HOH A 102 702 124 HOH HOH . K 6 HOH A 103 703 60 HOH HOH . K 6 HOH A 104 704 80 HOH HOH . K 6 HOH A 105 705 169 HOH HOH . K 6 HOH A 106 706 150 HOH HOH . K 6 HOH A 107 707 147 HOH HOH . K 6 HOH A 108 708 95 HOH HOH . K 6 HOH A 109 709 1 HOH HOH . K 6 HOH A 110 710 132 HOH HOH . K 6 HOH A 111 711 71 HOH HOH . K 6 HOH A 112 712 181 HOH HOH . K 6 HOH A 113 713 114 HOH HOH . K 6 HOH A 114 714 110 HOH HOH . K 6 HOH A 115 715 72 HOH HOH . K 6 HOH A 116 716 43 HOH HOH . K 6 HOH A 117 717 111 HOH HOH . K 6 HOH A 118 718 158 HOH HOH . K 6 HOH A 119 719 46 HOH HOH . K 6 HOH A 120 720 35 HOH HOH . K 6 HOH A 121 721 100 HOH HOH . K 6 HOH A 122 722 129 HOH HOH . K 6 HOH A 123 723 14 HOH HOH . K 6 HOH A 124 724 139 HOH HOH . K 6 HOH A 125 725 39 HOH HOH . K 6 HOH A 126 726 165 HOH HOH . K 6 HOH A 127 727 127 HOH HOH . K 6 HOH A 128 728 30 HOH HOH . K 6 HOH A 129 729 138 HOH HOH . K 6 HOH A 130 730 98 HOH HOH . K 6 HOH A 131 731 33 HOH HOH . K 6 HOH A 132 732 126 HOH HOH . K 6 HOH A 133 733 15 HOH HOH . K 6 HOH A 134 734 65 HOH HOH . K 6 HOH A 135 735 78 HOH HOH . K 6 HOH A 136 736 102 HOH HOH . K 6 HOH A 137 737 120 HOH HOH . K 6 HOH A 138 738 88 HOH HOH . K 6 HOH A 139 739 32 HOH HOH . K 6 HOH A 140 740 128 HOH HOH . K 6 HOH A 141 741 166 HOH HOH . K 6 HOH A 142 742 137 HOH HOH . K 6 HOH A 143 743 180 HOH HOH . K 6 HOH A 144 744 21 HOH HOH . K 6 HOH A 145 745 159 HOH HOH . K 6 HOH A 146 746 156 HOH HOH . K 6 HOH A 147 747 91 HOH HOH . K 6 HOH A 148 748 116 HOH HOH . K 6 HOH A 149 749 136 HOH HOH . K 6 HOH A 150 750 163 HOH HOH . K 6 HOH A 151 751 160 HOH HOH . K 6 HOH A 152 752 119 HOH HOH . K 6 HOH A 153 753 172 HOH HOH . K 6 HOH A 154 754 141 HOH HOH . K 6 HOH A 155 755 19 HOH HOH . K 6 HOH A 156 756 171 HOH HOH . K 6 HOH A 157 757 63 HOH HOH . K 6 HOH A 158 758 121 HOH HOH . K 6 HOH A 159 759 118 HOH HOH . K 6 HOH A 160 760 175 HOH HOH . K 6 HOH A 161 761 104 HOH HOH . K 6 HOH A 162 762 115 HOH HOH . K 6 HOH A 163 763 154 HOH HOH . K 6 HOH A 164 764 134 HOH HOH . K 6 HOH A 165 765 164 HOH HOH . K 6 HOH A 166 766 176 HOH HOH . K 6 HOH A 167 767 168 HOH HOH . K 6 HOH A 168 768 99 HOH HOH . K 6 HOH A 169 769 125 HOH HOH . K 6 HOH A 170 770 142 HOH HOH . K 6 HOH A 171 771 106 HOH HOH . K 6 HOH A 172 772 174 HOH HOH . K 6 HOH A 173 773 11 HOH HOH . K 6 HOH A 174 774 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x -11.796 _atom_site.Cartn_y 19.44 _atom_site.Cartn_z 39.754 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 508 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #