data_5TL9 # _model_server_result.job_id UQZK09d2V_VwENeomO07mQ _model_server_result.datetime_utc '2025-01-17 20:53:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5TL9 # _exptl.entry_id 5TL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 264.315 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'hexyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TL9 _cell.length_a 77.318 _cell.length_b 77.318 _cell.length_c 122.954 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 60 A TYR 58 1_555 A N CSO 61 A CSO 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CSO 61 A CSO 59 1_555 A N ARG 62 A ARG 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C12 H24 O6' _chem_comp.formula_weight 264.315 _chem_comp.id JZR _chem_comp.mon_nstd_flag n _chem_comp.name 'hexyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TL9 _atom_sites.fract_transf_matrix[1][1] 0.012934 _atom_sites.fract_transf_matrix[1][2] 0.007467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7DN A 1 201 1 7DN SX1 . C 3 GSH A 1 202 1 GSH GTT . D 4 JZR A 1 203 2 JZR BOG . E 5 BOG A 1 204 3 BOG BOG . F 6 PG4 A 1 205 4 PG4 PG4 . G 6 PG4 A 1 206 5 PG4 PG4 . H 7 PEG A 1 207 6 PEG PG4 . I 8 HOH A 1 301 1 HOH HOH . I 8 HOH A 2 302 7 HOH HOH . I 8 HOH A 3 303 28 HOH HOH . I 8 HOH A 4 304 2 HOH HOH . I 8 HOH A 5 305 3 HOH HOH . I 8 HOH A 6 306 6 HOH HOH . I 8 HOH A 7 307 26 HOH HOH . I 8 HOH A 8 308 24 HOH HOH . I 8 HOH A 9 309 27 HOH HOH . I 8 HOH A 10 310 29 HOH HOH . I 8 HOH A 11 311 5 HOH HOH . I 8 HOH A 12 312 33 HOH HOH . I 8 HOH A 13 313 125 HOH HOH . I 8 HOH A 14 314 97 HOH HOH . I 8 HOH A 15 315 95 HOH HOH . I 8 HOH A 16 316 13 HOH HOH . I 8 HOH A 17 317 10 HOH HOH . I 8 HOH A 18 318 23 HOH HOH . I 8 HOH A 19 319 4 HOH HOH . I 8 HOH A 20 320 22 HOH HOH . I 8 HOH A 21 321 8 HOH HOH . I 8 HOH A 22 322 9 HOH HOH . I 8 HOH A 23 323 94 HOH HOH . I 8 HOH A 24 324 55 HOH HOH . I 8 HOH A 25 325 32 HOH HOH . I 8 HOH A 26 326 47 HOH HOH . I 8 HOH A 27 327 73 HOH HOH . I 8 HOH A 28 328 36 HOH HOH . I 8 HOH A 29 329 11 HOH HOH . I 8 HOH A 30 330 37 HOH HOH . I 8 HOH A 31 331 15 HOH HOH . I 8 HOH A 32 332 41 HOH HOH . I 8 HOH A 33 333 80 HOH HOH . I 8 HOH A 34 334 16 HOH HOH . I 8 HOH A 35 335 46 HOH HOH . I 8 HOH A 36 336 132 HOH HOH . I 8 HOH A 37 337 18 HOH HOH . I 8 HOH A 38 338 30 HOH HOH . I 8 HOH A 39 339 129 HOH HOH . I 8 HOH A 40 340 17 HOH HOH . I 8 HOH A 41 341 76 HOH HOH . I 8 HOH A 42 342 31 HOH HOH . I 8 HOH A 43 343 45 HOH HOH . I 8 HOH A 44 344 86 HOH HOH . I 8 HOH A 45 345 43 HOH HOH . I 8 HOH A 46 346 51 HOH HOH . I 8 HOH A 47 347 50 HOH HOH . I 8 HOH A 48 348 48 HOH HOH . I 8 HOH A 49 349 113 HOH HOH . I 8 HOH A 50 350 136 HOH HOH . I 8 HOH A 51 351 35 HOH HOH . I 8 HOH A 52 352 115 HOH HOH . I 8 HOH A 53 353 25 HOH HOH . I 8 HOH A 54 354 68 HOH HOH . I 8 HOH A 55 355 107 HOH HOH . I 8 HOH A 56 356 69 HOH HOH . I 8 HOH A 57 357 34 HOH HOH . I 8 HOH A 58 358 63 HOH HOH . I 8 HOH A 59 359 96 HOH HOH . I 8 HOH A 60 360 14 HOH HOH . I 8 HOH A 61 361 64 HOH HOH . I 8 HOH A 62 362 84 HOH HOH . I 8 HOH A 63 363 104 HOH HOH . I 8 HOH A 64 364 59 HOH HOH . I 8 HOH A 65 365 131 HOH HOH . I 8 HOH A 66 366 39 HOH HOH . I 8 HOH A 67 367 70 HOH HOH . I 8 HOH A 68 368 87 HOH HOH . I 8 HOH A 69 369 137 HOH HOH . I 8 HOH A 70 370 65 HOH HOH . I 8 HOH A 71 371 42 HOH HOH . I 8 HOH A 72 372 61 HOH HOH . I 8 HOH A 73 373 79 HOH HOH . I 8 HOH A 74 374 102 HOH HOH . I 8 HOH A 75 375 74 HOH HOH . I 8 HOH A 76 376 20 HOH HOH . I 8 HOH A 77 377 19 HOH HOH . I 8 HOH A 78 378 119 HOH HOH . I 8 HOH A 79 379 49 HOH HOH . I 8 HOH A 80 380 72 HOH HOH . I 8 HOH A 81 381 77 HOH HOH . I 8 HOH A 82 382 12 HOH HOH . I 8 HOH A 83 383 135 HOH HOH . I 8 HOH A 84 384 60 HOH HOH . I 8 HOH A 85 385 56 HOH HOH . I 8 HOH A 86 386 44 HOH HOH . I 8 HOH A 87 387 134 HOH HOH . I 8 HOH A 88 388 78 HOH HOH . I 8 HOH A 89 389 57 HOH HOH . I 8 HOH A 90 390 108 HOH HOH . I 8 HOH A 91 391 67 HOH HOH . I 8 HOH A 92 392 116 HOH HOH . I 8 HOH A 93 393 91 HOH HOH . I 8 HOH A 94 394 101 HOH HOH . I 8 HOH A 95 395 54 HOH HOH . I 8 HOH A 96 396 109 HOH HOH . I 8 HOH A 97 397 121 HOH HOH . I 8 HOH A 98 398 118 HOH HOH . I 8 HOH A 99 399 112 HOH HOH . I 8 HOH A 100 400 92 HOH HOH . I 8 HOH A 101 401 85 HOH HOH . I 8 HOH A 102 402 105 HOH HOH . I 8 HOH A 103 403 83 HOH HOH . I 8 HOH A 104 404 38 HOH HOH . I 8 HOH A 105 405 133 HOH HOH . I 8 HOH A 106 406 75 HOH HOH . I 8 HOH A 107 407 66 HOH HOH . I 8 HOH A 108 408 110 HOH HOH . I 8 HOH A 109 409 120 HOH HOH . I 8 HOH A 110 410 53 HOH HOH . I 8 HOH A 111 411 40 HOH HOH . I 8 HOH A 112 412 123 HOH HOH . I 8 HOH A 113 413 62 HOH HOH . I 8 HOH A 114 414 127 HOH HOH . I 8 HOH A 115 415 71 HOH HOH . I 8 HOH A 116 416 103 HOH HOH . I 8 HOH A 117 417 122 HOH HOH . I 8 HOH A 118 418 130 HOH HOH . I 8 HOH A 119 419 58 HOH HOH . I 8 HOH A 120 420 98 HOH HOH . I 8 HOH A 121 421 82 HOH HOH . I 8 HOH A 122 422 90 HOH HOH . I 8 HOH A 123 423 52 HOH HOH . I 8 HOH A 124 424 114 HOH HOH . I 8 HOH A 125 425 128 HOH HOH . I 8 HOH A 126 426 81 HOH HOH . I 8 HOH A 127 427 93 HOH HOH . I 8 HOH A 128 428 126 HOH HOH . I 8 HOH A 129 429 21 HOH HOH . I 8 HOH A 130 430 111 HOH HOH . I 8 HOH A 131 431 99 HOH HOH . I 8 HOH A 132 432 88 HOH HOH . I 8 HOH A 133 433 117 HOH HOH . I 8 HOH A 134 434 124 HOH HOH . I 8 HOH A 135 435 89 HOH HOH . I 8 HOH A 136 436 100 HOH HOH . I 8 HOH A 137 437 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JZR . . . D 4 10.155 19.953 9.822 1 30.04 ? C1 JZR 203 A 1 HETATM 2 O O1 JZR . . . D 4 10.083 19.213 11.038 1 27.3 ? O1 JZR 203 A 1 HETATM 3 C C2 JZR . . . D 4 10.112 19.014 8.608 1 32.13 ? C2 JZR 203 A 1 HETATM 4 O O2 JZR . . . D 4 11.278 18.189 8.587 1 32 ? O2 JZR 203 A 1 HETATM 5 C C3 JZR . . . D 4 10.062 19.824 7.306 1 32.61 ? C3 JZR 203 A 1 HETATM 6 O O3 JZR . . . D 4 9.876 18.946 6.19 1 40.28 ? O3 JZR 203 A 1 HETATM 7 C C4 JZR . . . D 4 8.965 20.895 7.329 1 34.54 ? C4 JZR 203 A 1 HETATM 8 O O4 JZR . . . D 4 9.079 21.721 6.164 1 36.11 ? O4 JZR 203 A 1 HETATM 9 C C5 JZR . . . D 4 9.083 21.735 8.61 1 35.52 ? C5 JZR 203 A 1 HETATM 10 O O5 JZR . . . D 4 9.056 20.877 9.762 1 32.18 ? O5 JZR 203 A 1 HETATM 11 C C6 JZR . . . D 4 7.999 22.802 8.742 1 33.17 ? C6 JZR 203 A 1 HETATM 12 O O6 JZR . . . D 4 6.727 22.221 9.055 1 33.25 ? O6 JZR 203 A 1 HETATM 13 C C1' JZR . . . D 4 10.748 19.873 12.116 1 37.45 ? C1' JZR 203 A 1 HETATM 14 C C2' JZR . . . D 4 10.586 19.053 13.39 1 38.22 ? C2' JZR 203 A 1 HETATM 15 C C3' JZR . . . D 4 10.227 19.941 14.575 1 41.9 ? C3' JZR 203 A 1 HETATM 16 C C4' JZR . . . D 4 10.633 19.279 15.886 1 45.95 ? C4' JZR 203 A 1 HETATM 17 C C5' JZR . . . D 4 10.091 20.054 17.081 1 58.72 ? C5' JZR 203 A 1 HETATM 18 C C6' JZR . . . D 4 9.67 19.112 18.203 1 48.57 ? C6' JZR 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 18 #