data_5TMC # _model_server_result.job_id bxWLbyTX1CZpxM-mqXPE9A _model_server_result.datetime_utc '2024-11-01 09:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1601}' # _entry.id 5TMC # _exptl.entry_id 5TMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TMC _cell.length_a 236.35 _cell.length_b 236.35 _cell.length_c 249.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N ? 8 M N N ? 8 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 1112 D CYS 1112 1_555 D SG CYS 1201 D CYS 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 C O PRO 793 C PRO 793 1_555 I MG MG . C MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc2 C O PRO 794 C PRO 794 1_555 I MG MG . C MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc3 C O GLY 795 C GLY 795 1_555 I MG MG . C MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc4 C O GLU 796 C GLU 796 1_555 I MG MG . C MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc5 D SG CYS 58 D CYS 58 1_555 K ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc6 D SG CYS 60 D CYS 60 1_555 K ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc7 D SG CYS 73 D CYS 73 1_555 K ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc8 D SG CYS 76 D CYS 76 1_555 K ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc9 D OD1 ASP 741 D ASP 741 1_555 M MG MG . D MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc10 D OD1 ASP 743 D ASP 743 1_555 M MG MG . D MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc11 D SG CYS 1112 D CYS 1112 1_555 L ZN ZN . D ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc12 D SG CYS 1194 D CYS 1194 1_555 L ZN ZN . D ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc13 D SG CYS 1201 D CYS 1201 1_555 L ZN ZN . D ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc14 D SG CYS 1204 D CYS 1204 1_555 L ZN ZN . D ZN 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc15 J MG MG . D MG 1601 1_555 N O1A G4P . D G4P 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? metalc ? metalc16 M MG MG . D MG 1604 1_555 S O HOH . D HOH 1745 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc17 N O2C G4P . D G4P 1605 1_555 O MG MG . D MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc18 N O3C G4P . D G4P 1605 1_555 O MG MG . D MG 1606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc19 O MG MG . D MG 1606 1_555 S O HOH . D HOH 1707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc20 O MG MG . D MG 1606 1_555 S O HOH . D HOH 1730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TMC _atom_sites.fract_transf_matrix[1][1] 0.004231 _atom_sites.fract_transf_matrix[1][2] 0.002443 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 7 PO4 A 1 401 1 PO4 PO4 . I 8 MG C 1 1201 1 MG MG . J 8 MG D 1 1601 1 MG MG . K 9 ZN D 1 1602 1525 ZN ZN . L 9 ZN D 1 1603 1526 ZN ZN . M 8 MG D 1 1604 1 MG MG . N 10 G4P D 1 1605 9100 G4P G4P . O 8 MG D 1 1606 1 MG MG . P 11 HOH A 1 501 64 HOH HOH . P 11 HOH A 2 502 60 HOH HOH . P 11 HOH A 3 503 144 HOH HOH . P 11 HOH A 4 504 28 HOH HOH . P 11 HOH A 5 505 17 HOH HOH . P 11 HOH A 6 506 77 HOH HOH . P 11 HOH A 7 507 66 HOH HOH . P 11 HOH A 8 508 65 HOH HOH . P 11 HOH A 9 509 8 HOH HOH . P 11 HOH A 10 510 61 HOH HOH . P 11 HOH A 11 511 63 HOH HOH . P 11 HOH A 12 512 5 HOH HOH . P 11 HOH A 13 513 31 HOH HOH . P 11 HOH A 14 514 2 HOH HOH . P 11 HOH A 15 515 135 HOH HOH . Q 11 HOH B 1 401 56 HOH HOH . Q 11 HOH B 2 402 71 HOH HOH . R 11 HOH C 1 1301 9 HOH HOH . R 11 HOH C 2 1302 82 HOH HOH . R 11 HOH C 3 1303 14 HOH HOH . R 11 HOH C 4 1304 94 HOH HOH . R 11 HOH C 5 1305 79 HOH HOH . R 11 HOH C 6 1306 89 HOH HOH . R 11 HOH C 7 1307 143 HOH HOH . R 11 HOH C 8 1308 23 HOH HOH . R 11 HOH C 9 1309 81 HOH HOH . R 11 HOH C 10 1310 67 HOH HOH . R 11 HOH C 11 1311 30 HOH HOH . R 11 HOH C 12 1312 125 HOH HOH . R 11 HOH C 13 1313 105 HOH HOH . R 11 HOH C 14 1314 47 HOH HOH . R 11 HOH C 15 1315 48 HOH HOH . R 11 HOH C 16 1316 139 HOH HOH . R 11 HOH C 17 1317 126 HOH HOH . R 11 HOH C 18 1318 138 HOH HOH . R 11 HOH C 19 1319 12 HOH HOH . R 11 HOH C 20 1320 15 HOH HOH . R 11 HOH C 21 1321 129 HOH HOH . R 11 HOH C 22 1322 33 HOH HOH . R 11 HOH C 23 1323 99 HOH HOH . R 11 HOH C 24 1324 55 HOH HOH . R 11 HOH C 25 1325 93 HOH HOH . R 11 HOH C 26 1326 128 HOH HOH . R 11 HOH C 27 1327 90 HOH HOH . R 11 HOH C 28 1328 127 HOH HOH . R 11 HOH C 29 1329 35 HOH HOH . R 11 HOH C 30 1330 3 HOH HOH . R 11 HOH C 31 1331 57 HOH HOH . R 11 HOH C 32 1332 10 HOH HOH . R 11 HOH C 33 1333 50 HOH HOH . R 11 HOH C 34 1334 44 HOH HOH . R 11 HOH C 35 1335 85 HOH HOH . R 11 HOH C 36 1336 34 HOH HOH . R 11 HOH C 37 1337 78 HOH HOH . R 11 HOH C 38 1338 91 HOH HOH . R 11 HOH C 39 1339 45 HOH HOH . R 11 HOH C 40 1340 6 HOH HOH . R 11 HOH C 41 1341 46 HOH HOH . R 11 HOH C 42 1342 96 HOH HOH . R 11 HOH C 43 1343 76 HOH HOH . R 11 HOH C 44 1344 24 HOH HOH . R 11 HOH C 45 1345 4 HOH HOH . R 11 HOH C 46 1346 75 HOH HOH . R 11 HOH C 47 1347 58 HOH HOH . R 11 HOH C 48 1348 142 HOH HOH . R 11 HOH C 49 1349 36 HOH HOH . R 11 HOH C 50 1350 136 HOH HOH . R 11 HOH C 51 1351 16 HOH HOH . R 11 HOH C 52 1352 88 HOH HOH . R 11 HOH C 53 1353 134 HOH HOH . R 11 HOH C 54 1354 86 HOH HOH . S 11 HOH D 1 1701 20 HOH HOH . S 11 HOH D 2 1702 62 HOH HOH . S 11 HOH D 3 1703 53 HOH HOH . S 11 HOH D 4 1704 101 HOH HOH . S 11 HOH D 5 1705 124 HOH HOH . S 11 HOH D 6 1706 74 HOH HOH . S 11 HOH D 7 1707 132 HOH HOH . S 11 HOH D 8 1708 26 HOH HOH . S 11 HOH D 9 1709 80 HOH HOH . S 11 HOH D 10 1710 123 HOH HOH . S 11 HOH D 11 1711 121 HOH HOH . S 11 HOH D 12 1712 97 HOH HOH . S 11 HOH D 13 1713 25 HOH HOH . S 11 HOH D 14 1714 116 HOH HOH . S 11 HOH D 15 1715 29 HOH HOH . S 11 HOH D 16 1716 106 HOH HOH . S 11 HOH D 17 1717 122 HOH HOH . S 11 HOH D 18 1718 140 HOH HOH . S 11 HOH D 19 1719 102 HOH HOH . S 11 HOH D 20 1720 19 HOH HOH . S 11 HOH D 21 1721 22 HOH HOH . S 11 HOH D 22 1722 95 HOH HOH . S 11 HOH D 23 1723 117 HOH HOH . S 11 HOH D 24 1724 98 HOH HOH . S 11 HOH D 25 1725 118 HOH HOH . S 11 HOH D 26 1726 32 HOH HOH . S 11 HOH D 27 1727 120 HOH HOH . S 11 HOH D 28 1728 107 HOH HOH . S 11 HOH D 29 1729 38 HOH HOH . S 11 HOH D 30 1730 146 HOH HOH . S 11 HOH D 31 1731 137 HOH HOH . S 11 HOH D 32 1732 100 HOH HOH . S 11 HOH D 33 1733 133 HOH HOH . S 11 HOH D 34 1734 18 HOH HOH . S 11 HOH D 35 1735 59 HOH HOH . S 11 HOH D 36 1736 141 HOH HOH . S 11 HOH D 37 1737 69 HOH HOH . S 11 HOH D 38 1738 42 HOH HOH . S 11 HOH D 39 1739 148 HOH HOH . S 11 HOH D 40 1740 39 HOH HOH . S 11 HOH D 41 1741 52 HOH HOH . S 11 HOH D 42 1742 73 HOH HOH . S 11 HOH D 43 1743 51 HOH HOH . S 11 HOH D 44 1744 40 HOH HOH . S 11 HOH D 45 1745 130 HOH HOH . S 11 HOH D 46 1746 7 HOH HOH . S 11 HOH D 47 1747 87 HOH HOH . S 11 HOH D 48 1748 92 HOH HOH . S 11 HOH D 49 1749 21 HOH HOH . S 11 HOH D 50 1750 37 HOH HOH . S 11 HOH D 51 1751 54 HOH HOH . S 11 HOH D 52 1752 41 HOH HOH . S 11 HOH D 53 1753 13 HOH HOH . S 11 HOH D 54 1754 147 HOH HOH . S 11 HOH D 55 1755 72 HOH HOH . S 11 HOH D 56 1756 70 HOH HOH . S 11 HOH D 57 1757 1 HOH HOH . S 11 HOH D 58 1758 131 HOH HOH . S 11 HOH D 59 1759 115 HOH HOH . S 11 HOH D 60 1760 145 HOH HOH . S 11 HOH D 61 1761 68 HOH HOH . S 11 HOH D 62 1762 49 HOH HOH . T 11 HOH E 1 101 119 HOH HOH . T 11 HOH E 2 102 111 HOH HOH . T 11 HOH E 3 103 108 HOH HOH . T 11 HOH E 4 104 113 HOH HOH . T 11 HOH E 5 105 110 HOH HOH . T 11 HOH E 6 106 43 HOH HOH . T 11 HOH E 7 107 109 HOH HOH . T 11 HOH E 8 108 112 HOH HOH . T 11 HOH E 9 109 114 HOH HOH . U 11 HOH F 1 501 11 HOH HOH . U 11 HOH F 2 502 104 HOH HOH . U 11 HOH F 3 503 83 HOH HOH . U 11 HOH F 4 504 103 HOH HOH . U 11 HOH F 5 505 84 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x -16.98 _atom_site.Cartn_y 163.479 _atom_site.Cartn_z 2.279 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 133.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1601 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #