data_5TMD # _model_server_result.job_id sWpL7NJ84C7WA1PwJAziTg _model_server_result.datetime_utc '2025-01-01 10:28:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5TMD # _exptl.entry_id 5TMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description trichothecene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TMD _cell.length_a 59.441 _cell.length_b 83.155 _cell.length_c 99.425 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 O2' _chem_comp.formula_weight 234.334 _chem_comp.id 7E0 _chem_comp.mon_nstd_flag . _chem_comp.name trichothecene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (11beta)-12,13-epoxytrichothec-9-ene # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C9 7E0 sing 1 n n C12 C11 7E0 sing 2 n n C12 C13 7E0 sing 3 n n C17 O6 7E0 sing 4 n n C17 C16 7E0 sing 5 n n C11 C10 7E0 sing 6 n n O6 C16 7E0 sing 7 n n C20 C13 7E0 sing 8 n n C13 C14 7E0 doub 9 n n C9 C16 7E0 sing 10 n n C9 C10 7E0 sing 11 n n C9 C8 7E0 sing 12 n n C16 C6 7E0 sing 13 n n C10 C19 7E0 sing 14 n n C10 C15 7E0 sing 15 n n C8 C7 7E0 sing 16 n n C14 C15 7E0 sing 17 n n C15 O3 7E0 sing 18 n n C6 C7 7E0 sing 19 n n C6 O3 7E0 sing 20 n n C20 H1 7E0 sing 21 n n C20 H2 7E0 sing 22 n n C20 H3 7E0 sing 23 n n C12 H4 7E0 sing 24 n n C12 H5 7E0 sing 25 n n C11 H6 7E0 sing 26 n n C11 H7 7E0 sing 27 n n C14 H8 7E0 sing 28 n n C15 H9 7E0 sing 29 n n C19 H10 7E0 sing 30 n n C19 H11 7E0 sing 31 n n C19 H12 7E0 sing 32 n n C18 H13 7E0 sing 33 n n C18 H14 7E0 sing 34 n n C18 H15 7E0 sing 35 n n C8 H16 7E0 sing 36 n n C8 H17 7E0 sing 37 n n C7 H18 7E0 sing 38 n n C7 H19 7E0 sing 39 n n C6 H20 7E0 sing 40 n n C17 H21 7E0 sing 41 n n C17 H22 7E0 sing 42 n n # _atom_sites.entry_id 5TMD _atom_sites.fract_transf_matrix[1][1] 0.016823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U2F A 1 501 1 U2F U2F . C 3 7E0 A 1 502 1 7E0 TR7 . D 4 HOH A 1 601 249 HOH HOH . D 4 HOH A 2 602 92 HOH HOH . D 4 HOH A 3 603 103 HOH HOH . D 4 HOH A 4 604 260 HOH HOH . D 4 HOH A 5 605 156 HOH HOH . D 4 HOH A 6 606 273 HOH HOH . D 4 HOH A 7 607 223 HOH HOH . D 4 HOH A 8 608 34 HOH HOH . D 4 HOH A 9 609 259 HOH HOH . D 4 HOH A 10 610 254 HOH HOH . D 4 HOH A 11 611 236 HOH HOH . D 4 HOH A 12 612 94 HOH HOH . D 4 HOH A 13 613 141 HOH HOH . D 4 HOH A 14 614 218 HOH HOH . D 4 HOH A 15 615 130 HOH HOH . D 4 HOH A 16 616 261 HOH HOH . D 4 HOH A 17 617 211 HOH HOH . D 4 HOH A 18 618 82 HOH HOH . D 4 HOH A 19 619 184 HOH HOH . D 4 HOH A 20 620 63 HOH HOH . D 4 HOH A 21 621 55 HOH HOH . D 4 HOH A 22 622 67 HOH HOH . D 4 HOH A 23 623 105 HOH HOH . D 4 HOH A 24 624 25 HOH HOH . D 4 HOH A 25 625 18 HOH HOH . D 4 HOH A 26 626 189 HOH HOH . D 4 HOH A 27 627 88 HOH HOH . D 4 HOH A 28 628 110 HOH HOH . D 4 HOH A 29 629 60 HOH HOH . D 4 HOH A 30 630 49 HOH HOH . D 4 HOH A 31 631 57 HOH HOH . D 4 HOH A 32 632 219 HOH HOH . D 4 HOH A 33 633 220 HOH HOH . D 4 HOH A 34 634 138 HOH HOH . D 4 HOH A 35 635 112 HOH HOH . D 4 HOH A 36 636 15 HOH HOH . D 4 HOH A 37 637 70 HOH HOH . D 4 HOH A 38 638 196 HOH HOH . D 4 HOH A 39 639 109 HOH HOH . D 4 HOH A 40 640 126 HOH HOH . D 4 HOH A 41 641 38 HOH HOH . D 4 HOH A 42 642 215 HOH HOH . D 4 HOH A 43 643 54 HOH HOH . D 4 HOH A 44 644 26 HOH HOH . D 4 HOH A 45 645 19 HOH HOH . D 4 HOH A 46 646 182 HOH HOH . D 4 HOH A 47 647 17 HOH HOH . D 4 HOH A 48 648 200 HOH HOH . D 4 HOH A 49 649 6 HOH HOH . D 4 HOH A 50 650 135 HOH HOH . D 4 HOH A 51 651 61 HOH HOH . D 4 HOH A 52 652 50 HOH HOH . D 4 HOH A 53 653 4 HOH HOH . D 4 HOH A 54 654 221 HOH HOH . D 4 HOH A 55 655 262 HOH HOH . D 4 HOH A 56 656 106 HOH HOH . D 4 HOH A 57 657 35 HOH HOH . D 4 HOH A 58 658 48 HOH HOH . D 4 HOH A 59 659 51 HOH HOH . D 4 HOH A 60 660 195 HOH HOH . D 4 HOH A 61 661 242 HOH HOH . D 4 HOH A 62 662 7 HOH HOH . D 4 HOH A 63 663 43 HOH HOH . D 4 HOH A 64 664 205 HOH HOH . D 4 HOH A 65 665 2 HOH HOH . D 4 HOH A 66 666 33 HOH HOH . D 4 HOH A 67 667 58 HOH HOH . D 4 HOH A 68 668 258 HOH HOH . D 4 HOH A 69 669 11 HOH HOH . D 4 HOH A 70 670 46 HOH HOH . D 4 HOH A 71 671 230 HOH HOH . D 4 HOH A 72 672 93 HOH HOH . D 4 HOH A 73 673 199 HOH HOH . D 4 HOH A 74 674 127 HOH HOH . D 4 HOH A 75 675 91 HOH HOH . D 4 HOH A 76 676 113 HOH HOH . D 4 HOH A 77 677 84 HOH HOH . D 4 HOH A 78 678 128 HOH HOH . D 4 HOH A 79 679 14 HOH HOH . D 4 HOH A 80 680 29 HOH HOH . D 4 HOH A 81 681 188 HOH HOH . D 4 HOH A 82 682 3 HOH HOH . D 4 HOH A 83 683 74 HOH HOH . D 4 HOH A 84 684 83 HOH HOH . D 4 HOH A 85 685 144 HOH HOH . D 4 HOH A 86 686 13 HOH HOH . D 4 HOH A 87 687 149 HOH HOH . D 4 HOH A 88 688 124 HOH HOH . D 4 HOH A 89 689 73 HOH HOH . D 4 HOH A 90 690 12 HOH HOH . D 4 HOH A 91 691 210 HOH HOH . D 4 HOH A 92 692 21 HOH HOH . D 4 HOH A 93 693 1 HOH HOH . D 4 HOH A 94 694 203 HOH HOH . D 4 HOH A 95 695 118 HOH HOH . D 4 HOH A 96 696 24 HOH HOH . D 4 HOH A 97 697 115 HOH HOH . D 4 HOH A 98 698 142 HOH HOH . D 4 HOH A 99 699 202 HOH HOH . D 4 HOH A 100 700 245 HOH HOH . D 4 HOH A 101 701 224 HOH HOH . D 4 HOH A 102 702 177 HOH HOH . D 4 HOH A 103 703 9 HOH HOH . D 4 HOH A 104 704 65 HOH HOH . D 4 HOH A 105 705 131 HOH HOH . D 4 HOH A 106 706 165 HOH HOH . D 4 HOH A 107 707 192 HOH HOH . D 4 HOH A 108 708 47 HOH HOH . D 4 HOH A 109 709 28 HOH HOH . D 4 HOH A 110 710 155 HOH HOH . D 4 HOH A 111 711 238 HOH HOH . D 4 HOH A 112 712 107 HOH HOH . D 4 HOH A 113 713 133 HOH HOH . D 4 HOH A 114 714 193 HOH HOH . D 4 HOH A 115 715 22 HOH HOH . D 4 HOH A 116 716 8 HOH HOH . D 4 HOH A 117 717 86 HOH HOH . D 4 HOH A 118 718 96 HOH HOH . D 4 HOH A 119 719 32 HOH HOH . D 4 HOH A 120 720 5 HOH HOH . D 4 HOH A 121 721 120 HOH HOH . D 4 HOH A 122 722 31 HOH HOH . D 4 HOH A 123 723 139 HOH HOH . D 4 HOH A 124 724 136 HOH HOH . D 4 HOH A 125 725 234 HOH HOH . D 4 HOH A 126 726 64 HOH HOH . D 4 HOH A 127 727 137 HOH HOH . D 4 HOH A 128 728 80 HOH HOH . D 4 HOH A 129 729 146 HOH HOH . D 4 HOH A 130 730 172 HOH HOH . D 4 HOH A 131 731 16 HOH HOH . D 4 HOH A 132 732 72 HOH HOH . D 4 HOH A 133 733 160 HOH HOH . D 4 HOH A 134 734 20 HOH HOH . D 4 HOH A 135 735 201 HOH HOH . D 4 HOH A 136 736 30 HOH HOH . D 4 HOH A 137 737 167 HOH HOH . D 4 HOH A 138 738 71 HOH HOH . D 4 HOH A 139 739 56 HOH HOH . D 4 HOH A 140 740 81 HOH HOH . D 4 HOH A 141 741 204 HOH HOH . D 4 HOH A 142 742 152 HOH HOH . D 4 HOH A 143 743 186 HOH HOH . D 4 HOH A 144 744 226 HOH HOH . D 4 HOH A 145 745 41 HOH HOH . D 4 HOH A 146 746 266 HOH HOH . D 4 HOH A 147 747 37 HOH HOH . D 4 HOH A 148 748 90 HOH HOH . D 4 HOH A 149 749 162 HOH HOH . D 4 HOH A 150 750 228 HOH HOH . D 4 HOH A 151 751 170 HOH HOH . D 4 HOH A 152 752 225 HOH HOH . D 4 HOH A 153 753 154 HOH HOH . D 4 HOH A 154 754 222 HOH HOH . D 4 HOH A 155 755 42 HOH HOH . D 4 HOH A 156 756 239 HOH HOH . D 4 HOH A 157 757 114 HOH HOH . D 4 HOH A 158 758 77 HOH HOH . D 4 HOH A 159 759 52 HOH HOH . D 4 HOH A 160 760 117 HOH HOH . D 4 HOH A 161 761 166 HOH HOH . D 4 HOH A 162 762 206 HOH HOH . D 4 HOH A 163 763 169 HOH HOH . D 4 HOH A 164 764 95 HOH HOH . D 4 HOH A 165 765 229 HOH HOH . D 4 HOH A 166 766 66 HOH HOH . D 4 HOH A 167 767 101 HOH HOH . D 4 HOH A 168 768 213 HOH HOH . D 4 HOH A 169 769 23 HOH HOH . D 4 HOH A 170 770 59 HOH HOH . D 4 HOH A 171 771 233 HOH HOH . D 4 HOH A 172 772 134 HOH HOH . D 4 HOH A 173 773 36 HOH HOH . D 4 HOH A 174 774 119 HOH HOH . D 4 HOH A 175 775 111 HOH HOH . D 4 HOH A 176 776 171 HOH HOH . D 4 HOH A 177 777 87 HOH HOH . D 4 HOH A 178 778 244 HOH HOH . D 4 HOH A 179 779 27 HOH HOH . D 4 HOH A 180 780 78 HOH HOH . D 4 HOH A 181 781 44 HOH HOH . D 4 HOH A 182 782 241 HOH HOH . D 4 HOH A 183 783 79 HOH HOH . D 4 HOH A 184 784 102 HOH HOH . D 4 HOH A 185 785 246 HOH HOH . D 4 HOH A 186 786 198 HOH HOH . D 4 HOH A 187 787 164 HOH HOH . D 4 HOH A 188 788 148 HOH HOH . D 4 HOH A 189 789 75 HOH HOH . D 4 HOH A 190 790 153 HOH HOH . D 4 HOH A 191 791 40 HOH HOH . D 4 HOH A 192 792 129 HOH HOH . D 4 HOH A 193 793 183 HOH HOH . D 4 HOH A 194 794 89 HOH HOH . D 4 HOH A 195 795 45 HOH HOH . D 4 HOH A 196 796 181 HOH HOH . D 4 HOH A 197 797 157 HOH HOH . D 4 HOH A 198 798 190 HOH HOH . D 4 HOH A 199 799 53 HOH HOH . D 4 HOH A 200 800 123 HOH HOH . D 4 HOH A 201 801 212 HOH HOH . D 4 HOH A 202 802 207 HOH HOH . D 4 HOH A 203 803 108 HOH HOH . D 4 HOH A 204 804 100 HOH HOH . D 4 HOH A 205 805 143 HOH HOH . D 4 HOH A 206 806 147 HOH HOH . D 4 HOH A 207 807 194 HOH HOH . D 4 HOH A 208 808 251 HOH HOH . D 4 HOH A 209 809 99 HOH HOH . D 4 HOH A 210 810 39 HOH HOH . D 4 HOH A 211 811 68 HOH HOH . D 4 HOH A 212 812 209 HOH HOH . D 4 HOH A 213 813 178 HOH HOH . D 4 HOH A 214 814 265 HOH HOH . D 4 HOH A 215 815 158 HOH HOH . D 4 HOH A 216 816 69 HOH HOH . D 4 HOH A 217 817 175 HOH HOH . D 4 HOH A 218 818 271 HOH HOH . D 4 HOH A 219 819 191 HOH HOH . D 4 HOH A 220 820 235 HOH HOH . D 4 HOH A 221 821 232 HOH HOH . D 4 HOH A 222 822 97 HOH HOH . D 4 HOH A 223 823 248 HOH HOH . D 4 HOH A 224 824 151 HOH HOH . D 4 HOH A 225 825 116 HOH HOH . D 4 HOH A 226 826 98 HOH HOH . D 4 HOH A 227 827 168 HOH HOH . D 4 HOH A 228 828 125 HOH HOH . D 4 HOH A 229 829 185 HOH HOH . D 4 HOH A 230 830 217 HOH HOH . D 4 HOH A 231 831 163 HOH HOH . D 4 HOH A 232 832 216 HOH HOH . D 4 HOH A 233 833 176 HOH HOH . D 4 HOH A 234 834 257 HOH HOH . D 4 HOH A 235 835 256 HOH HOH . D 4 HOH A 236 836 243 HOH HOH . D 4 HOH A 237 837 253 HOH HOH . D 4 HOH A 238 838 85 HOH HOH . D 4 HOH A 239 839 76 HOH HOH . D 4 HOH A 240 840 252 HOH HOH . D 4 HOH A 241 841 132 HOH HOH . D 4 HOH A 242 842 180 HOH HOH . D 4 HOH A 243 843 150 HOH HOH . D 4 HOH A 244 844 214 HOH HOH . D 4 HOH A 245 845 208 HOH HOH . D 4 HOH A 246 846 122 HOH HOH . D 4 HOH A 247 847 264 HOH HOH . D 4 HOH A 248 848 173 HOH HOH . D 4 HOH A 249 849 104 HOH HOH . D 4 HOH A 250 850 197 HOH HOH . D 4 HOH A 251 851 179 HOH HOH . D 4 HOH A 252 852 145 HOH HOH . D 4 HOH A 253 853 140 HOH HOH . D 4 HOH A 254 854 174 HOH HOH . D 4 HOH A 255 855 237 HOH HOH . D 4 HOH A 256 856 159 HOH HOH . D 4 HOH A 257 857 250 HOH HOH . D 4 HOH A 258 858 187 HOH HOH . D 4 HOH A 259 859 10 HOH HOH . D 4 HOH A 260 860 121 HOH HOH . D 4 HOH A 261 861 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 7E0 . . . C 3 8.624 6.818 -17.734 0.6 72.95 ? C20 7E0 502 A 1 HETATM 2 C C13 7E0 . . . C 3 9.903 6.126 -17.356 0.6 72.43 ? C13 7E0 502 A 1 HETATM 3 C C12 7E0 . . . C 3 10.978 6.022 -18.409 0.6 70.7 ? C12 7E0 502 A 1 HETATM 4 C C11 7E0 . . . C 3 12.329 5.73 -17.777 0.6 72.18 ? C11 7E0 502 A 1 HETATM 5 C C14 7E0 . . . C 3 10.063 5.619 -16.116 0.6 73.24 ? C14 7E0 502 A 1 HETATM 6 C C15 7E0 . . . C 3 11.321 4.901 -15.617 0.6 75.2 ? C15 7E0 502 A 1 HETATM 7 O O3 7E0 . . . C 3 10.909 3.738 -14.838 0.6 77.17 ? O3 7E0 502 A 1 HETATM 8 C C10 7E0 . . . C 3 12.359 4.594 -16.742 0.6 75.4 ? C10 7E0 502 A 1 HETATM 9 C C19 7E0 . . . C 3 13.758 4.773 -16.137 0.6 73.84 ? C19 7E0 502 A 1 HETATM 10 C C9 7E0 . . . C 3 12.127 3.172 -17.333 0.6 79.59 ? C9 7E0 502 A 1 HETATM 11 C C18 7E0 . . . C 3 12.49 2.985 -18.803 0.6 84.43 ? C18 7E0 502 A 1 HETATM 12 C C8 7E0 . . . C 3 12.784 2.002 -16.578 0.6 81.71 ? C8 7E0 502 A 1 HETATM 13 C C7 7E0 . . . C 3 11.853 1.616 -15.429 0.6 80.96 ? C7 7E0 502 A 1 HETATM 14 C C16 7E0 . . . C 3 10.692 2.825 -17.037 0.6 79.21 ? C16 7E0 502 A 1 HETATM 15 C C6 7E0 . . . C 3 10.647 2.527 -15.564 0.6 78.89 ? C6 7E0 502 A 1 HETATM 16 C C17 7E0 . . . C 3 9.502 2.834 -17.984 0.6 78.53 ? C17 7E0 502 A 1 HETATM 17 O O6 7E0 . . . C 3 10.285 1.667 -17.767 0.6 76.55 ? O6 7E0 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #