data_5TMF # _model_server_result.job_id T8yr1z98ZADB7Bjqxbhb6g _model_server_result.datetime_utc '2024-11-01 11:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1602}' # _entry.id 5TMF # _exptl.entry_id 5TMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TMF _cell.length_a 235.09 _cell.length_b 235.09 _cell.length_c 250.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D SG CYS 58 D CYS 58 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 D SG CYS 60 D CYS 60 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc3 D SG CYS 73 D CYS 73 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc4 D SG CYS 76 D CYS 76 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc5 D OD1 ASP 739 D ASP 739 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc6 D OD1 ASP 741 D ASP 741 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc7 D OD2 ASP 741 D ASP 741 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc8 D OD1 ASP 743 D ASP 743 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc9 D O LYS 840 D LYS 840 1_555 L MG MG . D MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc10 D SG CYS 1112 D CYS 1112 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc11 D SG CYS 1194 D CYS 1194 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc12 D SG CYS 1201 D CYS 1201 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc13 D SG CYS 1204 D CYS 1204 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TMF _atom_sites.fract_transf_matrix[1][1] 0.004254 _atom_sites.fract_transf_matrix[1][2] 0.002456 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 PO4 A 1 401 1 PO4 PO4 . H 7 NE6 C 1 1201 1529 NE6 NE6 . I 8 ZN D 1 1601 1525 ZN ZN . J 8 ZN D 1 1602 1526 ZN ZN . K 6 PO4 D 1 1603 2 PO4 PO4 . L 9 MG D 1 1604 1 MG MG . M 9 MG D 1 1605 1 MG MG . N 10 HOH A 1 501 17 HOH HOH . N 10 HOH A 2 502 5 HOH HOH . O 10 HOH B 1 401 36 HOH HOH . O 10 HOH B 2 402 33 HOH HOH . O 10 HOH B 3 403 6 HOH HOH . P 10 HOH C 1 1301 9 HOH HOH . P 10 HOH C 2 1302 45 HOH HOH . P 10 HOH C 3 1303 38 HOH HOH . P 10 HOH C 4 1304 50 HOH HOH . P 10 HOH C 5 1305 27 HOH HOH . P 10 HOH C 6 1306 46 HOH HOH . P 10 HOH C 7 1307 14 HOH HOH . P 10 HOH C 8 1308 47 HOH HOH . P 10 HOH C 9 1309 12 HOH HOH . P 10 HOH C 10 1310 3 HOH HOH . P 10 HOH C 11 1311 10 HOH HOH . P 10 HOH C 12 1312 4 HOH HOH . P 10 HOH C 13 1313 15 HOH HOH . P 10 HOH C 14 1314 30 HOH HOH . P 10 HOH C 15 1315 23 HOH HOH . P 10 HOH C 16 1316 43 HOH HOH . P 10 HOH C 17 1317 28 HOH HOH . P 10 HOH C 18 1318 31 HOH HOH . P 10 HOH C 19 1319 40 HOH HOH . P 10 HOH C 20 1320 41 HOH HOH . P 10 HOH C 21 1321 24 HOH HOH . P 10 HOH C 22 1322 16 HOH HOH . P 10 HOH C 23 1323 37 HOH HOH . Q 10 HOH D 1 1701 22 HOH HOH . Q 10 HOH D 2 1702 25 HOH HOH . Q 10 HOH D 3 1703 52 HOH HOH . Q 10 HOH D 4 1704 44 HOH HOH . Q 10 HOH D 5 1705 49 HOH HOH . Q 10 HOH D 6 1706 34 HOH HOH . Q 10 HOH D 7 1707 26 HOH HOH . Q 10 HOH D 8 1708 19 HOH HOH . Q 10 HOH D 9 1709 51 HOH HOH . Q 10 HOH D 10 1710 20 HOH HOH . Q 10 HOH D 11 1711 29 HOH HOH . Q 10 HOH D 12 1712 18 HOH HOH . Q 10 HOH D 13 1713 48 HOH HOH . Q 10 HOH D 14 1714 21 HOH HOH . Q 10 HOH D 15 1715 39 HOH HOH . Q 10 HOH D 16 1716 7 HOH HOH . Q 10 HOH D 17 1717 13 HOH HOH . Q 10 HOH D 18 1718 8 HOH HOH . Q 10 HOH D 19 1719 2 HOH HOH . Q 10 HOH D 20 1720 1 HOH HOH . R 10 HOH F 1 501 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x 10.81 _atom_site.Cartn_y 184.257 _atom_site.Cartn_z 23.481 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1602 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 205 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 472 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #