data_5TMF
#
_model_server_result.job_id            9s1tzyvYqZmOASxDEgnzGg 
_model_server_result.datetime_utc      '2024-11-01 11:37:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tmf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1604}' 
#
_entry.id    5TMF 
#
_exptl.entry_id    5TMF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5TMF 
_cell.length_a            235.09 
_cell.length_b            235.09 
_cell.length_c            250.88 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TMF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 L N N 
? 9 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D SG CYS 58 D CYS 58 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc2 D SG CYS 60 D CYS 60 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc3 D SG CYS 73 D CYS 73 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc4 D SG CYS 76 D CYS 76 1_555 I ZN ZN . D ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc5 D OD1 ASP 739 D ASP 739 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc6 D OD1 ASP 741 D ASP 741 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc7 D OD2 ASP 741 D ASP 741 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? 
metalc ? metalc8 D OD1 ASP 743 D ASP 743 1_555 M MG MG . D MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc9 D O LYS 840 D LYS 840 1_555 L MG MG . D MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc10 D SG CYS 1112 D CYS 1112 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc11 D SG CYS 1194 D CYS 1194 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc12 D SG CYS 1201 D CYS 1201 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc13 D SG CYS 1204 D CYS 1204 1_555 J ZN ZN . D ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5TMF 
_atom_sites.fract_transf_matrix[1][1]    0.004254 
_atom_sites.fract_transf_matrix[1][2]    0.002456 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003986 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 6 PO4 A 1 401 1 PO4 PO4 . 
H 7 NE6 C 1 1201 1529 NE6 NE6 . 
I 8 ZN D 1 1601 1525 ZN ZN . 
J 8 ZN D 1 1602 1526 ZN ZN . 
K 6 PO4 D 1 1603 2 PO4 PO4 . 
L 9 MG D 1 1604 1 MG MG . 
M 9 MG D 1 1605 1 MG MG . 
N 10 HOH A 1 501 17 HOH HOH . 
N 10 HOH A 2 502 5 HOH HOH . 
O 10 HOH B 1 401 36 HOH HOH . 
O 10 HOH B 2 402 33 HOH HOH . 
O 10 HOH B 3 403 6 HOH HOH . 
P 10 HOH C 1 1301 9 HOH HOH . 
P 10 HOH C 2 1302 45 HOH HOH . 
P 10 HOH C 3 1303 38 HOH HOH . 
P 10 HOH C 4 1304 50 HOH HOH . 
P 10 HOH C 5 1305 27 HOH HOH . 
P 10 HOH C 6 1306 46 HOH HOH . 
P 10 HOH C 7 1307 14 HOH HOH . 
P 10 HOH C 8 1308 47 HOH HOH . 
P 10 HOH C 9 1309 12 HOH HOH . 
P 10 HOH C 10 1310 3 HOH HOH . 
P 10 HOH C 11 1311 10 HOH HOH . 
P 10 HOH C 12 1312 4 HOH HOH . 
P 10 HOH C 13 1313 15 HOH HOH . 
P 10 HOH C 14 1314 30 HOH HOH . 
P 10 HOH C 15 1315 23 HOH HOH . 
P 10 HOH C 16 1316 43 HOH HOH . 
P 10 HOH C 17 1317 28 HOH HOH . 
P 10 HOH C 18 1318 31 HOH HOH . 
P 10 HOH C 19 1319 40 HOH HOH . 
P 10 HOH C 20 1320 41 HOH HOH . 
P 10 HOH C 21 1321 24 HOH HOH . 
P 10 HOH C 22 1322 16 HOH HOH . 
P 10 HOH C 23 1323 37 HOH HOH . 
Q 10 HOH D 1 1701 22 HOH HOH . 
Q 10 HOH D 2 1702 25 HOH HOH . 
Q 10 HOH D 3 1703 52 HOH HOH . 
Q 10 HOH D 4 1704 44 HOH HOH . 
Q 10 HOH D 5 1705 49 HOH HOH . 
Q 10 HOH D 6 1706 34 HOH HOH . 
Q 10 HOH D 7 1707 26 HOH HOH . 
Q 10 HOH D 8 1708 19 HOH HOH . 
Q 10 HOH D 9 1709 51 HOH HOH . 
Q 10 HOH D 10 1710 20 HOH HOH . 
Q 10 HOH D 11 1711 29 HOH HOH . 
Q 10 HOH D 12 1712 18 HOH HOH . 
Q 10 HOH D 13 1713 48 HOH HOH . 
Q 10 HOH D 14 1714 21 HOH HOH . 
Q 10 HOH D 15 1715 39 HOH HOH . 
Q 10 HOH D 16 1716 7 HOH HOH . 
Q 10 HOH D 17 1717 13 HOH HOH . 
Q 10 HOH D 18 1718 8 HOH HOH . 
Q 10 HOH D 19 1719 2 HOH HOH . 
Q 10 HOH D 20 1720 1 HOH HOH . 
R 10 HOH F 1 501 11 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       9 
_atom_site.Cartn_x               10.585 
_atom_site.Cartn_y               123.985 
_atom_site.Cartn_z               -1.602 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        101.21 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1604 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    103 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           1 
#