data_5TMG # _model_server_result.job_id dJZux1tKvYUV7uBlblskOQ _model_server_result.datetime_utc '2024-11-26 03:05:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 5TMG # _exptl.entry_id 5TMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TMG _cell.length_a 139.999 _cell.length_b 139.999 _cell.length_c 139.999 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,M 1 1 B,J,K,L,N 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -69.9995 -69.9995 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 69.9995 -69.9995 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 51 1_555 A SG CYS 55 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 214 A CYS 217 1_555 A SG CYS 218 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 256 A CYS 259 1_555 A SG CYS 293 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 48 B CYS 51 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 B SG CYS 214 B CYS 217 1_555 B SG CYS 218 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 B SG CYS 256 B CYS 259 1_555 B SG CYS 293 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A ND2 ASN 72 A ASN 75 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 B ND2 ASN 72 B ASN 75 1_555 J C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 166 n n S C1 DMS sing 167 n n S C2 DMS sing 168 n n C1 H11 DMS sing 169 n n C1 H12 DMS sing 170 n n C1 H13 DMS sing 171 n n C2 H21 DMS sing 172 n n C2 H22 DMS sing 173 n n C2 H23 DMS sing 174 n n # _atom_sites.entry_id 5TMG _atom_sites.fract_transf_matrix[1][1] 0.007143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 401 344 NAG NAG . D 3 7EK A 1 402 400 7EK LIG . E 4 PGE A 1 403 500 PGE PGE . F 5 PEG A 1 404 501 PEG PEG . G 6 DMS A 1 405 510 DMS DMS . H 6 DMS A 1 406 511 DMS DMS . I 6 DMS A 1 407 512 DMS DMS . J 2 NAG B 1 401 344 NAG NAG . K 3 7EK B 1 402 401 7EK LIG . L 4 PGE B 1 403 502 PGE PGE . M 7 HOH A 1 501 37 HOH HOH . M 7 HOH A 2 502 90 HOH HOH . M 7 HOH A 3 503 36 HOH HOH . M 7 HOH A 4 504 17 HOH HOH . M 7 HOH A 5 505 74 HOH HOH . M 7 HOH A 6 506 71 HOH HOH . M 7 HOH A 7 507 179 HOH HOH . M 7 HOH A 8 508 4 HOH HOH . M 7 HOH A 9 509 18 HOH HOH . M 7 HOH A 10 510 88 HOH HOH . M 7 HOH A 11 511 41 HOH HOH . M 7 HOH A 12 512 93 HOH HOH . M 7 HOH A 13 513 6 HOH HOH . M 7 HOH A 14 514 122 HOH HOH . M 7 HOH A 15 515 50 HOH HOH . M 7 HOH A 16 516 102 HOH HOH . M 7 HOH A 17 517 61 HOH HOH . M 7 HOH A 18 518 75 HOH HOH . M 7 HOH A 19 519 11 HOH HOH . M 7 HOH A 20 520 1 HOH HOH . M 7 HOH A 21 521 44 HOH HOH . M 7 HOH A 22 522 178 HOH HOH . M 7 HOH A 23 523 249 HOH HOH . M 7 HOH A 24 524 82 HOH HOH . M 7 HOH A 25 525 27 HOH HOH . M 7 HOH A 26 526 60 HOH HOH . M 7 HOH A 27 527 10 HOH HOH . M 7 HOH A 28 528 42 HOH HOH . M 7 HOH A 29 529 173 HOH HOH . M 7 HOH A 30 530 133 HOH HOH . M 7 HOH A 31 531 43 HOH HOH . M 7 HOH A 32 532 3 HOH HOH . M 7 HOH A 33 533 248 HOH HOH . M 7 HOH A 34 534 81 HOH HOH . M 7 HOH A 35 535 68 HOH HOH . M 7 HOH A 36 536 163 HOH HOH . M 7 HOH A 37 537 56 HOH HOH . M 7 HOH A 38 538 172 HOH HOH . M 7 HOH A 39 539 170 HOH HOH . M 7 HOH A 40 540 5 HOH HOH . M 7 HOH A 41 541 134 HOH HOH . M 7 HOH A 42 542 92 HOH HOH . M 7 HOH A 43 543 114 HOH HOH . M 7 HOH A 44 544 126 HOH HOH . M 7 HOH A 45 545 130 HOH HOH . M 7 HOH A 46 546 35 HOH HOH . M 7 HOH A 47 547 69 HOH HOH . M 7 HOH A 48 548 2 HOH HOH . M 7 HOH A 49 549 164 HOH HOH . M 7 HOH A 50 550 30 HOH HOH . M 7 HOH A 51 551 235 HOH HOH . M 7 HOH A 52 552 199 HOH HOH . M 7 HOH A 53 553 64 HOH HOH . M 7 HOH A 54 554 13 HOH HOH . M 7 HOH A 55 555 9 HOH HOH . M 7 HOH A 56 556 67 HOH HOH . M 7 HOH A 57 557 15 HOH HOH . M 7 HOH A 58 558 165 HOH HOH . M 7 HOH A 59 559 187 HOH HOH . M 7 HOH A 60 560 65 HOH HOH . M 7 HOH A 61 561 176 HOH HOH . M 7 HOH A 62 562 38 HOH HOH . M 7 HOH A 63 563 8 HOH HOH . M 7 HOH A 64 564 16 HOH HOH . M 7 HOH A 65 565 19 HOH HOH . M 7 HOH A 66 566 241 HOH HOH . M 7 HOH A 67 567 49 HOH HOH . M 7 HOH A 68 568 182 HOH HOH . M 7 HOH A 69 569 109 HOH HOH . M 7 HOH A 70 570 144 HOH HOH . M 7 HOH A 71 571 212 HOH HOH . M 7 HOH A 72 572 34 HOH HOH . M 7 HOH A 73 573 222 HOH HOH . M 7 HOH A 74 574 132 HOH HOH . M 7 HOH A 75 575 87 HOH HOH . M 7 HOH A 76 576 95 HOH HOH . M 7 HOH A 77 577 236 HOH HOH . M 7 HOH A 78 578 192 HOH HOH . M 7 HOH A 79 579 108 HOH HOH . M 7 HOH A 80 580 177 HOH HOH . M 7 HOH A 81 581 196 HOH HOH . M 7 HOH A 82 582 188 HOH HOH . M 7 HOH A 83 583 40 HOH HOH . M 7 HOH A 84 584 77 HOH HOH . M 7 HOH A 85 585 168 HOH HOH . M 7 HOH A 86 586 107 HOH HOH . M 7 HOH A 87 587 101 HOH HOH . M 7 HOH A 88 588 157 HOH HOH . M 7 HOH A 89 589 45 HOH HOH . M 7 HOH A 90 590 113 HOH HOH . M 7 HOH A 91 591 12 HOH HOH . M 7 HOH A 92 592 189 HOH HOH . M 7 HOH A 93 593 85 HOH HOH . M 7 HOH A 94 594 129 HOH HOH . M 7 HOH A 95 595 139 HOH HOH . M 7 HOH A 96 596 231 HOH HOH . M 7 HOH A 97 597 117 HOH HOH . M 7 HOH A 98 598 205 HOH HOH . M 7 HOH A 99 599 96 HOH HOH . M 7 HOH A 100 600 233 HOH HOH . M 7 HOH A 101 601 52 HOH HOH . M 7 HOH A 102 602 166 HOH HOH . M 7 HOH A 103 603 112 HOH HOH . M 7 HOH A 104 604 213 HOH HOH . M 7 HOH A 105 605 136 HOH HOH . M 7 HOH A 106 606 142 HOH HOH . M 7 HOH A 107 607 167 HOH HOH . M 7 HOH A 108 608 98 HOH HOH . M 7 HOH A 109 609 190 HOH HOH . M 7 HOH A 110 610 63 HOH HOH . M 7 HOH A 111 611 169 HOH HOH . M 7 HOH A 112 612 253 HOH HOH . M 7 HOH A 113 613 156 HOH HOH . M 7 HOH A 114 614 97 HOH HOH . M 7 HOH A 115 615 143 HOH HOH . M 7 HOH A 116 616 79 HOH HOH . M 7 HOH A 117 617 198 HOH HOH . M 7 HOH A 118 618 104 HOH HOH . M 7 HOH A 119 619 175 HOH HOH . M 7 HOH A 120 620 174 HOH HOH . M 7 HOH A 121 621 183 HOH HOH . M 7 HOH A 122 622 234 HOH HOH . M 7 HOH A 123 623 210 HOH HOH . M 7 HOH A 124 624 123 HOH HOH . M 7 HOH A 125 625 180 HOH HOH . M 7 HOH A 126 626 242 HOH HOH . M 7 HOH A 127 627 111 HOH HOH . M 7 HOH A 128 628 185 HOH HOH . M 7 HOH A 129 629 232 HOH HOH . M 7 HOH A 130 630 211 HOH HOH . M 7 HOH A 131 631 194 HOH HOH . M 7 HOH A 132 632 181 HOH HOH . M 7 HOH A 133 633 191 HOH HOH . M 7 HOH A 134 634 135 HOH HOH . M 7 HOH A 135 635 184 HOH HOH . M 7 HOH A 136 636 195 HOH HOH . M 7 HOH A 137 637 186 HOH HOH . M 7 HOH A 138 638 251 HOH HOH . M 7 HOH A 139 639 193 HOH HOH . N 7 HOH B 1 501 48 HOH HOH . N 7 HOH B 2 502 62 HOH HOH . N 7 HOH B 3 503 28 HOH HOH . N 7 HOH B 4 504 103 HOH HOH . N 7 HOH B 5 505 46 HOH HOH . N 7 HOH B 6 506 55 HOH HOH . N 7 HOH B 7 507 152 HOH HOH . N 7 HOH B 8 508 59 HOH HOH . N 7 HOH B 9 509 26 HOH HOH . N 7 HOH B 10 510 78 HOH HOH . N 7 HOH B 11 511 128 HOH HOH . N 7 HOH B 12 512 100 HOH HOH . N 7 HOH B 13 513 24 HOH HOH . N 7 HOH B 14 514 23 HOH HOH . N 7 HOH B 15 515 203 HOH HOH . N 7 HOH B 16 516 238 HOH HOH . N 7 HOH B 17 517 141 HOH HOH . N 7 HOH B 18 518 120 HOH HOH . N 7 HOH B 19 519 51 HOH HOH . N 7 HOH B 20 520 22 HOH HOH . N 7 HOH B 21 521 21 HOH HOH . N 7 HOH B 22 522 148 HOH HOH . N 7 HOH B 23 523 138 HOH HOH . N 7 HOH B 24 524 207 HOH HOH . N 7 HOH B 25 525 72 HOH HOH . N 7 HOH B 26 526 99 HOH HOH . N 7 HOH B 27 527 116 HOH HOH . N 7 HOH B 28 528 39 HOH HOH . N 7 HOH B 29 529 158 HOH HOH . N 7 HOH B 30 530 225 HOH HOH . N 7 HOH B 31 531 110 HOH HOH . N 7 HOH B 32 532 7 HOH HOH . N 7 HOH B 33 533 58 HOH HOH . N 7 HOH B 34 534 54 HOH HOH . N 7 HOH B 35 535 118 HOH HOH . N 7 HOH B 36 536 70 HOH HOH . N 7 HOH B 37 537 106 HOH HOH . N 7 HOH B 38 538 33 HOH HOH . N 7 HOH B 39 539 84 HOH HOH . N 7 HOH B 40 540 14 HOH HOH . N 7 HOH B 41 541 244 HOH HOH . N 7 HOH B 42 542 154 HOH HOH . N 7 HOH B 43 543 20 HOH HOH . N 7 HOH B 44 544 202 HOH HOH . N 7 HOH B 45 545 57 HOH HOH . N 7 HOH B 46 546 119 HOH HOH . N 7 HOH B 47 547 201 HOH HOH . N 7 HOH B 48 548 47 HOH HOH . N 7 HOH B 49 549 29 HOH HOH . N 7 HOH B 50 550 137 HOH HOH . N 7 HOH B 51 551 140 HOH HOH . N 7 HOH B 52 552 237 HOH HOH . N 7 HOH B 53 553 76 HOH HOH . N 7 HOH B 54 554 245 HOH HOH . N 7 HOH B 55 555 83 HOH HOH . N 7 HOH B 56 556 25 HOH HOH . N 7 HOH B 57 557 150 HOH HOH . N 7 HOH B 58 558 115 HOH HOH . N 7 HOH B 59 559 121 HOH HOH . N 7 HOH B 60 560 31 HOH HOH . N 7 HOH B 61 561 208 HOH HOH . N 7 HOH B 62 562 89 HOH HOH . N 7 HOH B 63 563 124 HOH HOH . N 7 HOH B 64 564 151 HOH HOH . N 7 HOH B 65 565 149 HOH HOH . N 7 HOH B 66 566 147 HOH HOH . N 7 HOH B 67 567 160 HOH HOH . N 7 HOH B 68 568 66 HOH HOH . N 7 HOH B 69 569 228 HOH HOH . N 7 HOH B 70 570 94 HOH HOH . N 7 HOH B 71 571 86 HOH HOH . N 7 HOH B 72 572 227 HOH HOH . N 7 HOH B 73 573 216 HOH HOH . N 7 HOH B 74 574 131 HOH HOH . N 7 HOH B 75 575 32 HOH HOH . N 7 HOH B 76 576 127 HOH HOH . N 7 HOH B 77 577 215 HOH HOH . N 7 HOH B 78 578 146 HOH HOH . N 7 HOH B 79 579 243 HOH HOH . N 7 HOH B 80 580 73 HOH HOH . N 7 HOH B 81 581 91 HOH HOH . N 7 HOH B 82 582 224 HOH HOH . N 7 HOH B 83 583 153 HOH HOH . N 7 HOH B 84 584 250 HOH HOH . N 7 HOH B 85 585 206 HOH HOH . N 7 HOH B 86 586 230 HOH HOH . N 7 HOH B 87 587 221 HOH HOH . N 7 HOH B 88 588 229 HOH HOH . N 7 HOH B 89 589 226 HOH HOH . N 7 HOH B 90 590 200 HOH HOH . N 7 HOH B 91 591 214 HOH HOH . N 7 HOH B 92 592 105 HOH HOH . N 7 HOH B 93 593 145 HOH HOH . N 7 HOH B 94 594 209 HOH HOH . N 7 HOH B 95 595 204 HOH HOH . N 7 HOH B 96 596 155 HOH HOH . N 7 HOH B 97 597 53 HOH HOH . N 7 HOH B 98 598 159 HOH HOH . N 7 HOH B 99 599 219 HOH HOH . N 7 HOH B 100 600 239 HOH HOH . N 7 HOH B 101 601 171 HOH HOH . N 7 HOH B 102 602 197 HOH HOH . N 7 HOH B 103 603 218 HOH HOH . N 7 HOH B 104 604 246 HOH HOH . N 7 HOH B 105 605 80 HOH HOH . N 7 HOH B 106 606 161 HOH HOH . N 7 HOH B 107 607 255 HOH HOH . N 7 HOH B 108 608 254 HOH HOH . N 7 HOH B 109 609 217 HOH HOH . N 7 HOH B 110 610 220 HOH HOH . N 7 HOH B 111 611 223 HOH HOH . N 7 HOH B 112 612 240 HOH HOH . N 7 HOH B 113 613 252 HOH HOH . N 7 HOH B 114 614 125 HOH HOH . N 7 HOH B 115 615 162 HOH HOH . N 7 HOH B 116 616 247 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 6 5.252 -42.544 -12.88 1 61.26 ? S DMS 406 A 1 HETATM 2 O O DMS . . . H 6 4.749 -41.267 -12.337 1 55.68 ? O DMS 406 A 1 HETATM 3 C C1 DMS . . . H 6 4.102 -43.765 -12.549 1 59.68 ? C1 DMS 406 A 1 HETATM 4 C C2 DMS . . . H 6 5.175 -42.508 -14.584 1 58.65 ? C2 DMS 406 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #