data_5TMK
#
_model_server_result.job_id            DO3XMsAGfPTtQEdM72Jd2A 
_model_server_result.datetime_utc      '2025-03-04 09:07:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    5TMK 
#
_exptl.entry_id    5TMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              524.695 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(4-methoxybutyl)-N-(2-methylpropyl)-N-[(3S,5R)-5-(morpholine-4-carbonyl)piperidin-3-yl]-5-phenyl-1H-pyrrole-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TMK 
_cell.length_a            139.717 
_cell.length_b            139.717 
_cell.length_c            139.717 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        198 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA hexameric 6 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,J 1 1 
B,H,I,K 2 1 
A,B,C,D,E,F,G,H,I,J,K 3 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -69.8585 -69.8585 
3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 69.8585 -69.8585 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 48 A CYS 51 1_555 A SG CYS 55 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 214 A CYS 217 1_555 A SG CYS 218 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 256 A CYS 259 1_555 A SG CYS 293 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 B SG CYS 48 B CYS 51 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 B SG CYS 214 B CYS 217 1_555 B SG CYS 218 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf6 B SG CYS 256 B CYS 259 1_555 B SG CYS 293 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 A ND2 ASN 72 A ASN 75 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C30 H44 N4 O4' 
_chem_comp.formula_weight    524.695 
_chem_comp.id                7EJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(4-methoxybutyl)-N-(2-methylpropyl)-N-[(3S,5R)-5-(morpholine-4-carbonyl)piperidin-3-yl]-5-phenyl-1H-pyrrole-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C15 7EJ doub 1 n y 
C16 C17 7EJ sing 2 n y 
C15 C14 7EJ sing 3 n y 
C17 C12 7EJ doub 4 n y 
C14 C13 7EJ doub 5 n y 
C12 C13 7EJ sing 6 n y 
C12 C11 7EJ sing 7 n n 
C10 C11 7EJ doub 8 n y 
C10 C9 7EJ sing 9 n y 
C11 N7 7EJ sing 10 n y 
C9 C8 7EJ doub 11 n y 
N7 C6 7EJ sing 12 n n 
N7 C8 7EJ sing 13 n y 
C6 C5 7EJ sing 14 n n 
C8 C18 7EJ sing 15 n n 
O19 C18 7EJ doub 16 n n 
C18 N20 7EJ sing 17 n n 
C4 C5 7EJ sing 18 n n 
C4 C3 7EJ sing 19 n n 
N20 C25 7EJ sing 20 n n 
N20 C21 7EJ sing 21 n n 
O2 C3 7EJ sing 22 n n 
O2 C1 7EJ sing 23 n n 
C32 C25 7EJ sing 24 n n 
C32 C30 7EJ sing 25 n n 
C25 C27 7EJ sing 26 n n 
C21 C22 7EJ sing 27 n n 
C36 N35 7EJ sing 28 n n 
C36 C37 7EJ sing 29 n n 
C30 C33 7EJ sing 30 n n 
C30 C29 7EJ sing 31 n n 
N35 C33 7EJ sing 32 n n 
N35 C40 7EJ sing 33 n n 
C33 O34 7EJ doub 34 n n 
C23 C22 7EJ sing 35 n n 
C40 C39 7EJ sing 36 n n 
C22 C24 7EJ sing 37 n n 
C27 N28 7EJ sing 38 n n 
C37 O38 7EJ sing 39 n n 
O38 C39 7EJ sing 40 n n 
N28 C29 7EJ sing 41 n n 
C4 H1 7EJ sing 42 n n 
C4 H2 7EJ sing 43 n n 
C5 H3 7EJ sing 44 n n 
C5 H4 7EJ sing 45 n n 
C6 H5 7EJ sing 46 n n 
C6 H6 7EJ sing 47 n n 
C10 H7 7EJ sing 48 n n 
C13 H8 7EJ sing 49 n n 
C15 H9 7EJ sing 50 n n 
C17 H10 7EJ sing 51 n n 
C21 H11 7EJ sing 52 n n 
C21 H12 7EJ sing 53 n n 
C22 H13 7EJ sing 54 n n 
C24 H14 7EJ sing 55 n n 
C24 H15 7EJ sing 56 n n 
C24 H16 7EJ sing 57 n n 
C1 H17 7EJ sing 58 n n 
C1 H18 7EJ sing 59 n n 
C1 H19 7EJ sing 60 n n 
C3 H20 7EJ sing 61 n n 
C3 H21 7EJ sing 62 n n 
C9 H22 7EJ sing 63 n n 
C14 H23 7EJ sing 64 n n 
C16 H24 7EJ sing 65 n n 
C23 H25 7EJ sing 66 n n 
C23 H26 7EJ sing 67 n n 
C23 H27 7EJ sing 68 n n 
C25 H28 7EJ sing 69 n n 
C27 H29 7EJ sing 70 n n 
C27 H30 7EJ sing 71 n n 
N28 H31 7EJ sing 72 n n 
C29 H33 7EJ sing 73 n n 
C29 H34 7EJ sing 74 n n 
C30 H35 7EJ sing 75 n n 
C32 H36 7EJ sing 76 n n 
C32 H37 7EJ sing 77 n n 
C36 H38 7EJ sing 78 n n 
C36 H39 7EJ sing 79 n n 
C37 H40 7EJ sing 80 n n 
C37 H41 7EJ sing 81 n n 
C39 H42 7EJ sing 82 n n 
C39 H43 7EJ sing 83 n n 
C40 H44 7EJ sing 84 n n 
C40 H45 7EJ sing 85 n n 
#
_atom_sites.entry_id                     5TMK 
_atom_sites.fract_transf_matrix[1][1]    0.007157 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007157 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 401 344 NAG NAG . 
D 3 7EJ A 1 402 350 7EJ LIG . 
E 4 DMS A 1 403 400 DMS DMS . 
F 4 DMS A 1 404 401 DMS DMS . 
G 4 DMS A 1 405 402 DMS DMS . 
H 3 7EJ B 1 401 351 7EJ LIG . 
I 5 PEG B 1 402 405 PEG PEG . 
J 6 HOH A 1 501 11 HOH HOH . 
J 6 HOH A 2 502 31 HOH HOH . 
J 6 HOH A 3 503 30 HOH HOH . 
J 6 HOH A 4 504 5 HOH HOH . 
J 6 HOH A 5 505 19 HOH HOH . 
J 6 HOH A 6 506 16 HOH HOH . 
J 6 HOH A 7 507 20 HOH HOH . 
J 6 HOH A 8 508 6 HOH HOH . 
J 6 HOH A 9 509 24 HOH HOH . 
J 6 HOH A 10 510 33 HOH HOH . 
J 6 HOH A 11 511 15 HOH HOH . 
J 6 HOH A 12 512 29 HOH HOH . 
J 6 HOH A 13 513 37 HOH HOH . 
J 6 HOH A 14 514 2 HOH HOH . 
J 6 HOH A 15 515 21 HOH HOH . 
J 6 HOH A 16 516 8 HOH HOH . 
J 6 HOH A 17 517 14 HOH HOH . 
J 6 HOH A 18 518 22 HOH HOH . 
J 6 HOH A 19 519 4 HOH HOH . 
J 6 HOH A 20 520 27 HOH HOH . 
J 6 HOH A 21 521 7 HOH HOH . 
J 6 HOH A 22 522 26 HOH HOH . 
J 6 HOH A 23 523 25 HOH HOH . 
J 6 HOH A 24 524 23 HOH HOH . 
J 6 HOH A 25 525 1 HOH HOH . 
J 6 HOH A 26 526 32 HOH HOH . 
K 6 HOH B 1 501 17 HOH HOH . 
K 6 HOH B 2 502 28 HOH HOH . 
K 6 HOH B 3 503 18 HOH HOH . 
K 6 HOH B 4 504 9 HOH HOH . 
K 6 HOH B 5 505 39 HOH HOH . 
K 6 HOH B 6 506 40 HOH HOH . 
K 6 HOH B 7 507 34 HOH HOH . 
K 6 HOH B 8 508 41 HOH HOH . 
K 6 HOH B 9 509 10 HOH HOH . 
K 6 HOH B 10 510 13 HOH HOH . 
K 6 HOH B 11 511 3 HOH HOH . 
K 6 HOH B 12 512 38 HOH HOH . 
K 6 HOH B 13 513 35 HOH HOH . 
K 6 HOH B 14 514 12 HOH HOH . 
K 6 HOH B 15 515 36 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 7EJ . . . H 3 30.557 -19.259 -17.599 1 69.18 ? C4 7EJ 401 B 1 
HETATM 2 C C5 7EJ . . . H 3 30.352 -17.947 -18.355 1 70.22 ? C5 7EJ 401 B 1 
HETATM 3 C C6 7EJ . . . H 3 31.424 -17.814 -19.437 1 72.28 ? C6 7EJ 401 B 1 
HETATM 4 C C8 7EJ . . . H 3 31.574 -15.489 -20.46 1 74.88 ? C8 7EJ 401 B 1 
HETATM 5 C C10 7EJ . . . H 3 30.068 -15.692 -22.104 1 77.82 ? C10 7EJ 401 B 1 
HETATM 6 C C13 7EJ . . . H 3 29.888 -19.242 -22.23 1 82.04 ? C13 7EJ 401 B 1 
HETATM 7 C C15 7EJ . . . H 3 27.711 -20.225 -22.502 1 84.68 ? C15 7EJ 401 B 1 
HETATM 8 C C17 7EJ . . . H 3 27.884 -17.953 -21.715 1 80.35 ? C17 7EJ 401 B 1 
HETATM 9 C C21 7EJ . . . H 3 31.142 -12.988 -18.919 1 69.88 ? C21 7EJ 401 B 1 
HETATM 10 C C22 7EJ . . . H 3 30.069 -13.18 -17.828 1 68.99 ? C22 7EJ 401 B 1 
HETATM 11 C C24 7EJ . . . H 3 30.065 -14.532 -17.112 1 68.77 ? C24 7EJ 401 B 1 
HETATM 12 C C1 7EJ . . . H 3 32.03 -20.221 -14.595 1 65.03 ? C1 7EJ 401 B 1 
HETATM 13 O O2 7EJ . . . H 3 30.829 -20.18 -15.37 1 66.72 ? O2 7EJ 401 B 1 
HETATM 14 C C3 7EJ . . . H 3 30.644 -18.969 -16.102 1 67.07 ? C3 7EJ 401 B 1 
HETATM 15 N N7 7EJ . . . H 3 31.049 -16.771 -20.409 1 75.59 ? N7 7EJ 401 B 1 
HETATM 16 C C9 7EJ . . . H 3 30.977 -14.827 -21.518 1 75.59 ? C9 7EJ 401 B 1 
HETATM 17 C C11 7EJ . . . H 3 30.12 -16.884 -21.42 1 78.15 ? C11 7EJ 401 B 1 
HETATM 18 C C12 7EJ . . . H 3 29.284 -18.049 -21.785 1 79.6 ? C12 7EJ 401 B 1 
HETATM 19 C C14 7EJ . . . H 3 29.099 -20.33 -22.579 1 84.72 ? C14 7EJ 401 B 1 
HETATM 20 C C16 7EJ . . . H 3 27.105 -19.047 -22.069 1 82.65 ? C16 7EJ 401 B 1 
HETATM 21 C C18 7EJ . . . H 3 32.616 -14.889 -19.603 1 73.45 ? C18 7EJ 401 B 1 
HETATM 22 O O19 7EJ . . . H 3 33.699 -15.458 -19.562 1 69.73 ? O19 7EJ 401 B 1 
HETATM 23 N N20 7EJ . . . H 3 32.429 -13.745 -18.876 1 72.58 ? N20 7EJ 401 B 1 
HETATM 24 C C23 7EJ . . . H 3 28.69 -12.954 -18.452 1 69.19 ? C23 7EJ 401 B 1 
HETATM 25 C C25 7EJ . . . H 3 33.607 -13.26 -18.111 1 72.7 ? C25 7EJ 401 B 1 
HETATM 26 C C27 7EJ . . . H 3 33.398 -13.204 -16.586 1 72.12 ? C27 7EJ 401 B 1 
HETATM 27 N N28 7EJ . . . H 3 34.543 -12.572 -15.905 1 71.26 ? N28 7EJ 401 B 1 
HETATM 28 C C29 7EJ . . . H 3 34.764 -11.186 -16.346 1 72.67 ? C29 7EJ 401 B 1 
HETATM 29 C C30 7EJ . . . H 3 35.139 -11.183 -17.838 1 74.94 ? C30 7EJ 401 B 1 
HETATM 30 C C32 7EJ . . . H 3 34.072 -11.902 -18.689 1 73.28 ? C32 7EJ 401 B 1 
HETATM 31 C C33 7EJ . . . H 3 35.305 -9.753 -18.311 1 76.59 ? C33 7EJ 401 B 1 
HETATM 32 O O34 7EJ . . . H 3 34.31 -9.08 -18.51 1 75.08 ? O34 7EJ 401 B 1 
HETATM 33 N N35 7EJ . . . H 3 36.531 -9.203 -18.513 1 78.93 ? N35 7EJ 401 B 1 
HETATM 34 C C36 7EJ . . . H 3 36.649 -7.797 -18.979 1 80.7 ? C36 7EJ 401 B 1 
HETATM 35 C C37 7EJ . . . H 3 37.585 -7.052 -18.015 1 84.28 ? C37 7EJ 401 B 1 
HETATM 36 O O38 7EJ . . . H 3 38.813 -7.796 -17.914 1 82.98 ? O38 7EJ 401 B 1 
HETATM 37 C C39 7EJ . . . H 3 38.702 -9.125 -17.383 1 81.97 ? C39 7EJ 401 B 1 
HETATM 38 C C40 7EJ . . . H 3 37.787 -9.965 -18.291 1 80.38 ? C40 7EJ 401 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#