data_5TMK # _model_server_result.job_id y3BhITiaym5hGs0iUZtuBQ _model_server_result.datetime_utc '2025-03-04 08:41:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5TMK # _exptl.entry_id 5TMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 524.695 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-methoxybutyl)-N-(2-methylpropyl)-N-[(3S,5R)-5-(morpholine-4-carbonyl)piperidin-3-yl]-5-phenyl-1H-pyrrole-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TMK _cell.length_a 139.717 _cell.length_b 139.717 _cell.length_c 139.717 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -69.8585 -69.8585 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 69.8585 -69.8585 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 51 1_555 A SG CYS 55 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 214 A CYS 217 1_555 A SG CYS 218 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 256 A CYS 259 1_555 A SG CYS 293 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 48 B CYS 51 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 B SG CYS 214 B CYS 217 1_555 B SG CYS 218 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 256 B CYS 259 1_555 B SG CYS 293 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 72 A ASN 75 1_555 C C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C30 H44 N4 O4' _chem_comp.formula_weight 524.695 _chem_comp.id 7EJ _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-methoxybutyl)-N-(2-methylpropyl)-N-[(3S,5R)-5-(morpholine-4-carbonyl)piperidin-3-yl]-5-phenyl-1H-pyrrole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 7EJ doub 1 n y C16 C17 7EJ sing 2 n y C15 C14 7EJ sing 3 n y C17 C12 7EJ doub 4 n y C14 C13 7EJ doub 5 n y C12 C13 7EJ sing 6 n y C12 C11 7EJ sing 7 n n C10 C11 7EJ doub 8 n y C10 C9 7EJ sing 9 n y C11 N7 7EJ sing 10 n y C9 C8 7EJ doub 11 n y N7 C6 7EJ sing 12 n n N7 C8 7EJ sing 13 n y C6 C5 7EJ sing 14 n n C8 C18 7EJ sing 15 n n O19 C18 7EJ doub 16 n n C18 N20 7EJ sing 17 n n C4 C5 7EJ sing 18 n n C4 C3 7EJ sing 19 n n N20 C25 7EJ sing 20 n n N20 C21 7EJ sing 21 n n O2 C3 7EJ sing 22 n n O2 C1 7EJ sing 23 n n C32 C25 7EJ sing 24 n n C32 C30 7EJ sing 25 n n C25 C27 7EJ sing 26 n n C21 C22 7EJ sing 27 n n C36 N35 7EJ sing 28 n n C36 C37 7EJ sing 29 n n C30 C33 7EJ sing 30 n n C30 C29 7EJ sing 31 n n N35 C33 7EJ sing 32 n n N35 C40 7EJ sing 33 n n C33 O34 7EJ doub 34 n n C23 C22 7EJ sing 35 n n C40 C39 7EJ sing 36 n n C22 C24 7EJ sing 37 n n C27 N28 7EJ sing 38 n n C37 O38 7EJ sing 39 n n O38 C39 7EJ sing 40 n n N28 C29 7EJ sing 41 n n C4 H1 7EJ sing 42 n n C4 H2 7EJ sing 43 n n C5 H3 7EJ sing 44 n n C5 H4 7EJ sing 45 n n C6 H5 7EJ sing 46 n n C6 H6 7EJ sing 47 n n C10 H7 7EJ sing 48 n n C13 H8 7EJ sing 49 n n C15 H9 7EJ sing 50 n n C17 H10 7EJ sing 51 n n C21 H11 7EJ sing 52 n n C21 H12 7EJ sing 53 n n C22 H13 7EJ sing 54 n n C24 H14 7EJ sing 55 n n C24 H15 7EJ sing 56 n n C24 H16 7EJ sing 57 n n C1 H17 7EJ sing 58 n n C1 H18 7EJ sing 59 n n C1 H19 7EJ sing 60 n n C3 H20 7EJ sing 61 n n C3 H21 7EJ sing 62 n n C9 H22 7EJ sing 63 n n C14 H23 7EJ sing 64 n n C16 H24 7EJ sing 65 n n C23 H25 7EJ sing 66 n n C23 H26 7EJ sing 67 n n C23 H27 7EJ sing 68 n n C25 H28 7EJ sing 69 n n C27 H29 7EJ sing 70 n n C27 H30 7EJ sing 71 n n N28 H31 7EJ sing 72 n n C29 H33 7EJ sing 73 n n C29 H34 7EJ sing 74 n n C30 H35 7EJ sing 75 n n C32 H36 7EJ sing 76 n n C32 H37 7EJ sing 77 n n C36 H38 7EJ sing 78 n n C36 H39 7EJ sing 79 n n C37 H40 7EJ sing 80 n n C37 H41 7EJ sing 81 n n C39 H42 7EJ sing 82 n n C39 H43 7EJ sing 83 n n C40 H44 7EJ sing 84 n n C40 H45 7EJ sing 85 n n # _atom_sites.entry_id 5TMK _atom_sites.fract_transf_matrix[1][1] 0.007157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 401 344 NAG NAG . D 3 7EJ A 1 402 350 7EJ LIG . E 4 DMS A 1 403 400 DMS DMS . F 4 DMS A 1 404 401 DMS DMS . G 4 DMS A 1 405 402 DMS DMS . H 3 7EJ B 1 401 351 7EJ LIG . I 5 PEG B 1 402 405 PEG PEG . J 6 HOH A 1 501 11 HOH HOH . J 6 HOH A 2 502 31 HOH HOH . J 6 HOH A 3 503 30 HOH HOH . J 6 HOH A 4 504 5 HOH HOH . J 6 HOH A 5 505 19 HOH HOH . J 6 HOH A 6 506 16 HOH HOH . J 6 HOH A 7 507 20 HOH HOH . J 6 HOH A 8 508 6 HOH HOH . J 6 HOH A 9 509 24 HOH HOH . J 6 HOH A 10 510 33 HOH HOH . J 6 HOH A 11 511 15 HOH HOH . J 6 HOH A 12 512 29 HOH HOH . J 6 HOH A 13 513 37 HOH HOH . J 6 HOH A 14 514 2 HOH HOH . J 6 HOH A 15 515 21 HOH HOH . J 6 HOH A 16 516 8 HOH HOH . J 6 HOH A 17 517 14 HOH HOH . J 6 HOH A 18 518 22 HOH HOH . J 6 HOH A 19 519 4 HOH HOH . J 6 HOH A 20 520 27 HOH HOH . J 6 HOH A 21 521 7 HOH HOH . J 6 HOH A 22 522 26 HOH HOH . J 6 HOH A 23 523 25 HOH HOH . J 6 HOH A 24 524 23 HOH HOH . J 6 HOH A 25 525 1 HOH HOH . J 6 HOH A 26 526 32 HOH HOH . K 6 HOH B 1 501 17 HOH HOH . K 6 HOH B 2 502 28 HOH HOH . K 6 HOH B 3 503 18 HOH HOH . K 6 HOH B 4 504 9 HOH HOH . K 6 HOH B 5 505 39 HOH HOH . K 6 HOH B 6 506 40 HOH HOH . K 6 HOH B 7 507 34 HOH HOH . K 6 HOH B 8 508 41 HOH HOH . K 6 HOH B 9 509 10 HOH HOH . K 6 HOH B 10 510 13 HOH HOH . K 6 HOH B 11 511 3 HOH HOH . K 6 HOH B 12 512 38 HOH HOH . K 6 HOH B 13 513 35 HOH HOH . K 6 HOH B 14 514 12 HOH HOH . K 6 HOH B 15 515 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7EJ . . . D 3 13.864 -44.799 -0.195 1 53.7 ? C4 7EJ 402 A 1 HETATM 2 C C5 7EJ . . . D 3 12.581 -45.63 -0.163 1 54.29 ? C5 7EJ 402 A 1 HETATM 3 C C6 7EJ . . . D 3 11.639 -45.225 -1.304 1 55.08 ? C6 7EJ 402 A 1 HETATM 4 C C8 7EJ . . . D 3 9.416 -46.469 -1.154 1 56.09 ? C8 7EJ 402 A 1 HETATM 5 C C10 7EJ . . . D 3 9.93 -48.306 -2.322 1 54.32 ? C10 7EJ 402 A 1 HETATM 6 C C13 7EJ . . . D 3 12.829 -49.168 -2.801 1 58.39 ? C13 7EJ 402 A 1 HETATM 7 C C15 7EJ . . . D 3 14.633 -48.579 -4.287 1 58.11 ? C15 7EJ 402 A 1 HETATM 8 C C17 7EJ . . . D 3 12.94 -46.948 -3.807 1 57.71 ? C17 7EJ 402 A 1 HETATM 9 C C21 7EJ . . . D 3 7.776 -47.119 1.313 1 55.98 ? C21 7EJ 402 A 1 HETATM 10 C C22 7EJ . . . D 3 8.81 -47.566 2.371 1 55.45 ? C22 7EJ 402 A 1 HETATM 11 C C24 7EJ . . . D 3 10.109 -46.762 2.472 1 53.85 ? C24 7EJ 402 A 1 HETATM 12 C C1 7EJ . . . D 3 14.749 -41.701 1.406 1 53.51 ? C1 7EJ 402 A 1 HETATM 13 O O2 7EJ . . . D 3 15.033 -43.028 0.973 1 54.09 ? O2 7EJ 402 A 1 HETATM 14 C C3 7EJ . . . D 3 13.908 -43.898 1.038 1 54.21 ? C3 7EJ 402 A 1 HETATM 15 N N7 7EJ . . . D 3 10.731 -46.352 -1.588 1 56.01 ? N7 7EJ 402 A 1 HETATM 16 C C9 7EJ . . . D 3 8.922 -47.666 -1.629 1 54.59 ? C9 7EJ 402 A 1 HETATM 17 C C11 7EJ . . . D 3 11.038 -47.497 -2.288 1 55.59 ? C11 7EJ 402 A 1 HETATM 18 C C12 7EJ . . . D 3 12.3 -47.873 -2.959 1 57.6 ? C12 7EJ 402 A 1 HETATM 19 C C14 7EJ . . . D 3 13.997 -49.505 -3.464 1 58.21 ? C14 7EJ 402 A 1 HETATM 20 C C16 7EJ . . . D 3 14.113 -47.301 -4.458 1 59.08 ? C16 7EJ 402 A 1 HETATM 21 C C18 7EJ . . . D 3 8.604 -45.494 -0.401 1 56.08 ? C18 7EJ 402 A 1 HETATM 22 O O19 7EJ . . . D 3 8.598 -44.366 -0.864 1 58.67 ? O19 7EJ 402 A 1 HETATM 23 N N20 7EJ . . . D 3 7.852 -45.757 0.713 1 56.53 ? N20 7EJ 402 A 1 HETATM 24 C C23 7EJ . . . D 3 9.145 -49.042 2.155 1 54.74 ? C23 7EJ 402 A 1 HETATM 25 C C25 7EJ . . . D 3 7.065 -44.615 1.261 1 57.1 ? C25 7EJ 402 A 1 HETATM 26 C C27 7EJ . . . D 3 7.542 -44.14 2.652 1 58.12 ? C27 7EJ 402 A 1 HETATM 27 N N28 7EJ . . . D 3 6.596 -43.209 3.299 1 58.4 ? N28 7EJ 402 A 1 HETATM 28 C C29 7EJ . . . D 3 5.235 -43.754 3.43 1 58.9 ? C29 7EJ 402 A 1 HETATM 29 C C30 7EJ . . . D 3 4.662 -43.939 2.017 1 60.83 ? C30 7EJ 402 A 1 HETATM 30 C C32 7EJ . . . D 3 5.545 -44.92 1.209 1 58.03 ? C32 7EJ 402 A 1 HETATM 31 C C33 7EJ . . . D 3 3.225 -44.425 2.105 1 64.73 ? C33 7EJ 402 A 1 HETATM 32 O O34 7EJ . . . D 3 3.031 -45.618 2.204 1 63.27 ? O34 7EJ 402 A 1 HETATM 33 N N35 7EJ . . . D 3 2.14 -43.596 2.073 1 68.98 ? N35 7EJ 402 A 1 HETATM 34 C C36 7EJ . . . D 3 2.237 -42.119 1.959 1 69.31 ? C36 7EJ 402 A 1 HETATM 35 C C37 7EJ . . . D 3 1.489 -41.53 3.169 1 71.59 ? C37 7EJ 402 A 1 HETATM 36 O O38 7EJ . . . D 3 0.154 -42.065 3.219 1 73.72 ? O38 7EJ 402 A 1 HETATM 37 C C39 7EJ . . . D 3 0.041 -43.493 3.349 1 72.62 ? C39 7EJ 402 A 1 HETATM 38 C C40 7EJ . . . D 3 0.767 -44.162 2.164 1 70.85 ? C40 7EJ 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #