data_5TMO # _model_server_result.job_id tpVManh6fBB11xxwG7YsFQ _model_server_result.datetime_utc '2025-06-23 00:03:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5TMO # _exptl.entry_id 5TMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 418.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "phenyl 4,4''-dihydroxy-[1,1':2',1''-terphenyl]-4'-sulfonate" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.72 _cell.angle_gamma 90 _cell.entry_id 5TMO _cell.length_a 54.953 _cell.length_b 82.221 _cell.length_c 58.604 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H18 O5 S' _chem_comp.formula_weight 418.462 _chem_comp.id 7M1 _chem_comp.mon_nstd_flag . _chem_comp.name "phenyl 4,4''-dihydroxy-[1,1':2',1''-terphenyl]-4'-sulfonate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 7M1 sing 1 n n C27 C29 7M1 doub 2 n y C27 C26 7M1 sing 3 n y C29 C30 7M1 sing 4 n y C26 C25 7M1 doub 5 n y C30 C24 7M1 doub 6 n y C25 C24 7M1 sing 7 n y C24 C23 7M1 sing 8 n n O01 C02 7M1 sing 9 n n C02 C03 7M1 doub 10 n y C02 C05 7M1 sing 11 n y C03 C04 7M1 sing 12 n y C05 C06 7M1 doub 13 n y C23 C22 7M1 doub 14 n y C23 C08 7M1 sing 15 n y C04 C07 7M1 doub 16 n y C06 C07 7M1 sing 17 n y C07 C08 7M1 sing 18 n n C22 C21 7M1 sing 19 n y C08 C09 7M1 doub 20 n y C21 C10 7M1 doub 21 n y C09 C10 7M1 sing 22 n y C10 S11 7M1 sing 23 n n O12 S11 7M1 sing 24 n n O12 C13 7M1 sing 25 n n S11 O19 7M1 doub 26 n n S11 O20 7M1 doub 27 n n C18 C13 7M1 doub 28 n y C18 C17 7M1 sing 29 n y C13 C14 7M1 sing 30 n y C17 C16 7M1 doub 31 n y C14 C15 7M1 doub 32 n y C16 C15 7M1 sing 33 n y O01 H1 7M1 sing 34 n n C03 H2 7M1 sing 35 n n C04 H3 7M1 sing 36 n n C05 H4 7M1 sing 37 n n C06 H5 7M1 sing 38 n n C09 H6 7M1 sing 39 n n C14 H7 7M1 sing 40 n n C15 H8 7M1 sing 41 n n C16 H9 7M1 sing 42 n n C17 H10 7M1 sing 43 n n C18 H11 7M1 sing 44 n n C21 H12 7M1 sing 45 n n C22 H13 7M1 sing 46 n n C25 H14 7M1 sing 47 n n C26 H15 7M1 sing 48 n n O28 H16 7M1 sing 49 n n C29 H17 7M1 sing 50 n n C30 H18 7M1 sing 51 n n # _atom_sites.entry_id 5TMO _atom_sites.fract_transf_matrix[1][1] 0.018197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006883 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 7M1 A 1 601 1 7M1 UNK . F 3 7M1 B 1 601 2 7M1 UNK . G 4 HOH A 1 701 61 HOH HOH . G 4 HOH A 2 702 57 HOH HOH . G 4 HOH A 3 703 8 HOH HOH . G 4 HOH A 4 704 79 HOH HOH . G 4 HOH A 5 705 45 HOH HOH . G 4 HOH A 6 706 7 HOH HOH . G 4 HOH A 7 707 77 HOH HOH . G 4 HOH A 8 708 15 HOH HOH . G 4 HOH A 9 709 26 HOH HOH . G 4 HOH A 10 710 51 HOH HOH . G 4 HOH A 11 711 14 HOH HOH . G 4 HOH A 12 712 49 HOH HOH . G 4 HOH A 13 713 11 HOH HOH . G 4 HOH A 14 714 17 HOH HOH . G 4 HOH A 15 715 46 HOH HOH . G 4 HOH A 16 716 35 HOH HOH . G 4 HOH A 17 717 83 HOH HOH . G 4 HOH A 18 718 23 HOH HOH . G 4 HOH A 19 719 16 HOH HOH . G 4 HOH A 20 720 3 HOH HOH . G 4 HOH A 21 721 88 HOH HOH . G 4 HOH A 22 722 73 HOH HOH . G 4 HOH A 23 723 20 HOH HOH . G 4 HOH A 24 724 85 HOH HOH . G 4 HOH A 25 725 67 HOH HOH . G 4 HOH A 26 726 81 HOH HOH . G 4 HOH A 27 727 63 HOH HOH . G 4 HOH A 28 728 69 HOH HOH . G 4 HOH A 29 729 12 HOH HOH . G 4 HOH A 30 730 50 HOH HOH . G 4 HOH A 31 731 9 HOH HOH . G 4 HOH A 32 732 59 HOH HOH . G 4 HOH A 33 733 62 HOH HOH . G 4 HOH A 34 734 24 HOH HOH . G 4 HOH A 35 735 39 HOH HOH . G 4 HOH A 36 736 18 HOH HOH . G 4 HOH A 37 737 19 HOH HOH . G 4 HOH A 38 738 38 HOH HOH . G 4 HOH A 39 739 86 HOH HOH . G 4 HOH A 40 740 80 HOH HOH . G 4 HOH A 41 741 27 HOH HOH . G 4 HOH A 42 742 40 HOH HOH . G 4 HOH A 43 743 1 HOH HOH . G 4 HOH A 44 744 56 HOH HOH . G 4 HOH A 45 745 48 HOH HOH . G 4 HOH A 46 746 75 HOH HOH . G 4 HOH A 47 747 70 HOH HOH . G 4 HOH A 48 748 71 HOH HOH . G 4 HOH A 49 749 42 HOH HOH . G 4 HOH A 50 750 90 HOH HOH . G 4 HOH A 51 751 34 HOH HOH . H 4 HOH B 1 701 84 HOH HOH . H 4 HOH B 2 702 28 HOH HOH . H 4 HOH B 3 703 91 HOH HOH . H 4 HOH B 4 704 65 HOH HOH . H 4 HOH B 5 705 72 HOH HOH . H 4 HOH B 6 706 41 HOH HOH . H 4 HOH B 7 707 58 HOH HOH . H 4 HOH B 8 708 55 HOH HOH . H 4 HOH B 9 709 13 HOH HOH . H 4 HOH B 10 710 89 HOH HOH . H 4 HOH B 11 711 22 HOH HOH . H 4 HOH B 12 712 30 HOH HOH . H 4 HOH B 13 713 31 HOH HOH . H 4 HOH B 14 714 25 HOH HOH . H 4 HOH B 15 715 64 HOH HOH . H 4 HOH B 16 716 4 HOH HOH . H 4 HOH B 17 717 53 HOH HOH . H 4 HOH B 18 718 5 HOH HOH . H 4 HOH B 19 719 76 HOH HOH . H 4 HOH B 20 720 32 HOH HOH . H 4 HOH B 21 721 37 HOH HOH . H 4 HOH B 22 722 52 HOH HOH . H 4 HOH B 23 723 10 HOH HOH . H 4 HOH B 24 724 29 HOH HOH . H 4 HOH B 25 725 2 HOH HOH . H 4 HOH B 26 726 68 HOH HOH . H 4 HOH B 27 727 33 HOH HOH . H 4 HOH B 28 728 21 HOH HOH . H 4 HOH B 29 729 66 HOH HOH . H 4 HOH B 30 730 36 HOH HOH . H 4 HOH B 31 731 43 HOH HOH . H 4 HOH B 32 732 92 HOH HOH . H 4 HOH B 33 733 44 HOH HOH . H 4 HOH B 34 734 60 HOH HOH . H 4 HOH B 35 735 93 HOH HOH . H 4 HOH B 36 736 54 HOH HOH . H 4 HOH B 37 737 87 HOH HOH . H 4 HOH B 38 738 47 HOH HOH . H 4 HOH B 39 739 82 HOH HOH . H 4 HOH B 40 740 78 HOH HOH . H 4 HOH B 41 741 6 HOH HOH . H 4 HOH B 42 742 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 7M1 . . . E 3 23.936 0.435 4.493 1 63.72 ? O01 7M1 601 A 1 HETATM 2 C C02 7M1 . . . E 3 22.809 -0.321 4.861 1 58.38 ? C02 7M1 601 A 1 HETATM 3 C C03 7M1 . . . E 3 22.897 -1.701 4.91 1 57.04 ? C03 7M1 601 A 1 HETATM 4 C C04 7M1 . . . E 3 21.788 -2.445 5.269 1 54.96 ? C04 7M1 601 A 1 HETATM 5 C C05 7M1 . . . E 3 21.615 0.313 5.171 1 53.09 ? C05 7M1 601 A 1 HETATM 6 C C06 7M1 . . . E 3 20.505 -0.432 5.53 1 54.6 ? C06 7M1 601 A 1 HETATM 7 C C07 7M1 . . . E 3 20.592 -1.812 5.568 1 53.55 ? C07 7M1 601 A 1 HETATM 8 C C08 7M1 . . . E 3 19.415 -2.665 5.974 1 52.64 ? C08 7M1 601 A 1 HETATM 9 C C09 7M1 . . . E 3 19.579 -3.353 7.159 1 54.96 ? C09 7M1 601 A 1 HETATM 10 C C10 7M1 . . . E 3 18.582 -4.168 7.646 1 64.66 ? C10 7M1 601 A 1 HETATM 11 S S11 7M1 . . . E 3 18.851 -5.029 9.165 1 79.07 ? S11 7M1 601 A 1 HETATM 12 O O12 7M1 . . . E 3 19.956 -6.034 8.933 1 90.03 ? O12 7M1 601 A 1 HETATM 13 C C13 7M1 . . . E 3 21.051 -6.172 9.811 1 92.92 ? C13 7M1 601 A 1 HETATM 14 C C14 7M1 . . . E 3 20.965 -7.052 10.879 1 92.96 ? C14 7M1 601 A 1 HETATM 15 C C15 7M1 . . . E 3 22.04 -7.219 11.735 1 92.71 ? C15 7M1 601 A 1 HETATM 16 C C16 7M1 . . . E 3 23.214 -6.511 11.525 1 93.9 ? C16 7M1 601 A 1 HETATM 17 C C17 7M1 . . . E 3 23.308 -5.635 10.454 1 92.56 ? C17 7M1 601 A 1 HETATM 18 C C18 7M1 . . . E 3 22.229 -5.471 9.595 1 91.9 ? C18 7M1 601 A 1 HETATM 19 O O19 7M1 . . . E 3 17.579 -5.715 9.586 1 83.97 ? O19 7M1 601 A 1 HETATM 20 O O20 7M1 . . . E 3 19.118 -4.088 10.313 1 76.36 ? O20 7M1 601 A 1 HETATM 21 C C21 7M1 . . . E 3 17.399 -4.32 6.949 1 55.59 ? C21 7M1 601 A 1 HETATM 22 C C22 7M1 . . . E 3 17.229 -3.634 5.762 1 53.23 ? C22 7M1 601 A 1 HETATM 23 C C23 7M1 . . . E 3 18.222 -2.806 5.261 1 52.38 ? C23 7M1 601 A 1 HETATM 24 C C24 7M1 . . . E 3 17.902 -2.125 3.949 1 49.79 ? C24 7M1 601 A 1 HETATM 25 C C25 7M1 . . . E 3 16.595 -1.718 3.743 1 47.36 ? C25 7M1 601 A 1 HETATM 26 C C26 7M1 . . . E 3 16.237 -1.107 2.559 1 47.27 ? C26 7M1 601 A 1 HETATM 27 C C27 7M1 . . . E 3 17.185 -0.91 1.569 1 45.89 ? C27 7M1 601 A 1 HETATM 28 O O28 7M1 . . . E 3 16.798 -0.288 0.373 1 47.02 ? O28 7M1 601 A 1 HETATM 29 C C29 7M1 . . . E 3 18.494 -1.324 1.759 1 46.81 ? C29 7M1 601 A 1 HETATM 30 C C30 7M1 . . . E 3 18.848 -1.942 2.948 1 49.82 ? C30 7M1 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #