data_5TMV # _model_server_result.job_id 6hhCefsN_BjFkYhmJMSXxg _model_server_result.datetime_utc '2024-11-29 03:17:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 5TMV # _exptl.entry_id 5TMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.374 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-iodophenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.61 _cell.angle_gamma 90 _cell.entry_id 5TMV _cell.length_a 54.39 _cell.length_b 81.52 _cell.length_c 58.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C24 H19 I O6 S' _chem_comp.formula_weight 562.374 _chem_comp.id 7FO _chem_comp.mon_nstd_flag . _chem_comp.name '4-iodophenyl (1S,2R,4S)-5,6-bis(4-hydroxyphenyl)-7-oxabicyclo[2.2.1]hept-5-ene-2-sulfonate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 S01 7FO doub 1 n n C24 C23 7FO doub 2 n y C24 C19 7FO sing 3 n y C23 C22 7FO sing 4 n y O05 S01 7FO doub 5 n n S01 O04 7FO sing 6 n n S01 C04 7FO sing 7 n n O04 C19 7FO sing 8 n n C19 C20 7FO doub 9 n y C22 I01 7FO sing 10 n n C22 C21 7FO doub 11 n y C03 C04 7FO sing 12 n n C03 C02 7FO sing 13 n n C04 C06 7FO sing 14 n n C20 C21 7FO sing 15 n y C02 O01 7FO sing 16 n n C02 C01 7FO sing 17 n n C06 O01 7FO sing 18 n n C06 C05 7FO sing 19 n n C09 C10 7FO doub 20 n y C09 C08 7FO sing 21 n y C10 C11 7FO sing 22 n y C01 C05 7FO doub 23 n n C01 C08 7FO sing 24 n n C05 C07 7FO sing 25 n n C08 C13 7FO doub 26 n y C18 C07 7FO doub 27 n y C18 C17 7FO sing 28 n y C07 C14 7FO sing 29 n y C17 C16 7FO doub 30 n y C11 O03 7FO sing 31 n n C11 C12 7FO doub 32 n y C14 C15 7FO doub 33 n y C13 C12 7FO sing 34 n y C16 C15 7FO sing 35 n y C16 O02 7FO sing 36 n n C02 H2 7FO sing 37 n n C03 H3 7FO sing 38 n n C03 H4 7FO sing 39 n n C04 H5 7FO sing 40 n n C06 H7 7FO sing 41 n n C09 H8 7FO sing 42 n n C10 H9 7FO sing 43 n n C12 H10 7FO sing 44 n n C13 H11 7FO sing 45 n n C14 H12 7FO sing 46 n n C15 H13 7FO sing 47 n n C17 H14 7FO sing 48 n n C18 H15 7FO sing 49 n n O02 H16 7FO sing 50 n n O03 H17 7FO sing 51 n n C20 H18 7FO sing 52 n n C21 H19 7FO sing 53 n n C23 H20 7FO sing 54 n n C24 H21 7FO sing 55 n n # _atom_sites.entry_id 5TMV _atom_sites.fract_transf_matrix[1][1] 0.018386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006914 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 7FO A 1 601 601 7FO 7FO . F 3 7FO B 1 601 601 7FO 7FO . G 4 HOH A 1 701 701 HOH HOH . G 4 HOH A 2 702 702 HOH HOH . G 4 HOH A 3 703 703 HOH HOH . G 4 HOH A 4 704 704 HOH HOH . G 4 HOH A 5 705 705 HOH HOH . G 4 HOH A 6 706 706 HOH HOH . G 4 HOH A 7 707 707 HOH HOH . G 4 HOH A 8 708 708 HOH HOH . G 4 HOH A 9 709 709 HOH HOH . G 4 HOH A 10 710 710 HOH HOH . G 4 HOH A 11 711 711 HOH HOH . G 4 HOH A 12 712 712 HOH HOH . G 4 HOH A 13 713 713 HOH HOH . G 4 HOH A 14 714 714 HOH HOH . G 4 HOH A 15 715 715 HOH HOH . G 4 HOH A 16 716 716 HOH HOH . G 4 HOH A 17 717 717 HOH HOH . G 4 HOH A 18 718 718 HOH HOH . G 4 HOH A 19 719 719 HOH HOH . G 4 HOH A 20 720 720 HOH HOH . G 4 HOH A 21 721 721 HOH HOH . G 4 HOH A 22 722 722 HOH HOH . G 4 HOH A 23 723 723 HOH HOH . G 4 HOH A 24 724 724 HOH HOH . G 4 HOH A 25 725 725 HOH HOH . G 4 HOH A 26 726 726 HOH HOH . G 4 HOH A 27 727 727 HOH HOH . G 4 HOH A 28 728 728 HOH HOH . G 4 HOH A 29 729 729 HOH HOH . G 4 HOH A 30 730 730 HOH HOH . G 4 HOH A 31 731 731 HOH HOH . G 4 HOH A 32 732 732 HOH HOH . H 4 HOH B 1 701 701 HOH HOH . H 4 HOH B 2 702 702 HOH HOH . H 4 HOH B 3 703 703 HOH HOH . H 4 HOH B 4 704 704 HOH HOH . H 4 HOH B 5 705 705 HOH HOH . H 4 HOH B 6 706 706 HOH HOH . H 4 HOH B 7 707 708 HOH HOH . H 4 HOH B 8 708 707 HOH HOH . H 4 HOH B 9 709 709 HOH HOH . H 4 HOH B 10 710 710 HOH HOH . H 4 HOH B 11 711 711 HOH HOH . H 4 HOH B 12 712 712 HOH HOH . H 4 HOH B 13 713 713 HOH HOH . H 4 HOH B 14 714 714 HOH HOH . H 4 HOH B 15 715 715 HOH HOH . H 4 HOH B 16 716 716 HOH HOH . H 4 HOH B 17 717 717 HOH HOH . H 4 HOH B 18 718 718 HOH HOH . H 4 HOH B 19 719 719 HOH HOH . H 4 HOH B 20 720 720 HOH HOH . H 4 HOH B 21 721 721 HOH HOH . H 4 HOH B 22 722 722 HOH HOH . H 4 HOH B 23 723 723 HOH HOH . H 4 HOH B 24 724 725 HOH HOH . H 4 HOH B 25 725 726 HOH HOH . H 4 HOH B 26 726 727 HOH HOH . H 4 HOH B 27 727 728 HOH HOH . H 4 HOH B 28 728 729 HOH HOH . H 4 HOH B 29 729 730 HOH HOH . H 4 HOH B 30 730 731 HOH HOH . H 4 HOH B 31 731 732 HOH HOH . H 4 HOH B 32 732 733 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 7FO . . . F 3 11.056 7.235 33.117 0.8 17.81 ? C01 7FO 601 B 1 HETATM 2 C C02 7FO . . . F 3 11.491 8.289 32.095 0.8 23.05 ? C02 7FO 601 B 1 HETATM 3 C C03 7FO . . . F 3 11.534 7.774 30.668 0.8 22.42 ? C03 7FO 601 B 1 HETATM 4 C C04 7FO . . . F 3 12.592 6.669 30.812 0.8 28.56 ? C04 7FO 601 B 1 HETATM 5 C C05 7FO . . . F 3 12.17 6.453 33.161 0.8 24.37 ? C05 7FO 601 B 1 HETATM 6 C C06 7FO . . . F 3 13.114 7.085 32.18 0.8 23.9 ? C06 7FO 601 B 1 HETATM 7 O O01 7FO . . . F 3 12.834 8.413 32.282 0.8 24.77 ? O01 7FO 601 B 1 HETATM 8 C C07 7FO . . . F 3 12.511 5.247 33.648 0.8 23.29 ? C07 7FO 601 B 1 HETATM 9 C C08 7FO . . . F 3 9.761 7.075 33.43 0.8 15.31 ? C08 7FO 601 B 1 HETATM 10 C C09 7FO . . . F 3 8.802 7.517 32.63 0.8 19.1 ? C09 7FO 601 B 1 HETATM 11 C C10 7FO . . . F 3 7.511 7.416 32.883 0.8 14.85 ? C10 7FO 601 B 1 HETATM 12 C C11 7FO . . . F 3 7.111 6.836 33.981 0.8 17.37 ? C11 7FO 601 B 1 HETATM 13 C C12 7FO . . . F 3 8.036 6.383 34.802 0.8 9.91 ? C12 7FO 601 B 1 HETATM 14 C C13 7FO . . . F 3 9.318 6.52 34.538 0.8 10.89 ? C13 7FO 601 B 1 HETATM 15 C C14 7FO . . . F 3 13.607 5.112 34.389 0.8 16.61 ? C14 7FO 601 B 1 HETATM 16 C C15 7FO . . . F 3 14.008 3.955 34.882 0.8 14.33 ? C15 7FO 601 B 1 HETATM 17 C C16 7FO . . . F 3 13.335 2.847 34.669 0.8 17.18 ? C16 7FO 601 B 1 HETATM 18 C C17 7FO . . . F 3 12.254 2.95 33.926 0.8 18.58 ? C17 7FO 601 B 1 HETATM 19 C C18 7FO . . . F 3 11.854 4.111 33.434 0.8 23.01 ? C18 7FO 601 B 1 HETATM 20 O O02 7FO . . . F 3 13.705 1.671 35.145 0.8 19.91 ? O02 7FO 601 B 1 HETATM 21 O O03 7FO . . . F 3 5.834 6.726 34.254 0.8 22.47 ? O03 7FO 601 B 1 HETATM 22 C C19 7FO . . . F 3 16.309 5.855 30.369 0.8 38.89 ? C19 7FO 601 B 1 HETATM 23 C C20 7FO . . . F 3 16.982 5.808 31.501 0.8 40.41 ? C20 7FO 601 B 1 HETATM 24 C C21 7FO . . . F 3 18.262 6.151 31.574 0.8 46.15 ? C21 7FO 601 B 1 HETATM 25 C C22 7FO . . . F 3 18.896 6.588 30.492 0.8 48.83 ? C22 7FO 601 B 1 HETATM 26 C C23 7FO . . . F 3 18.231 6.663 29.357 0.8 45.8 ? C23 7FO 601 B 1 HETATM 27 C C24 7FO . . . F 3 16.962 6.301 29.321 0.8 41.87 ? C24 7FO 601 B 1 HETATM 28 I I01 7FO . . . F 3 20.932 7.164 30.554 0.8 81.18 ? I01 7FO 601 B 1 HETATM 29 S S01 7FO . . . F 3 13.894 6.602 29.713 0.8 34.78 ? S01 7FO 601 B 1 HETATM 30 O O05 7FO . . . F 3 14.624 7.776 29.593 0.8 41.13 ? O05 7FO 601 B 1 HETATM 31 O O06 7FO . . . F 3 13.694 5.916 28.558 0.8 44.21 ? O06 7FO 601 B 1 HETATM 32 O O04 7FO . . . F 3 15 5.526 30.257 0.8 36.29 ? O04 7FO 601 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #