data_5TNO # _model_server_result.job_id AnKEinwFGsgJGvwJi4gxZg _model_server_result.datetime_utc '2025-02-05 11:42:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5TNO # _exptl.entry_id 5TNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TNO _cell.length_a 98.835 _cell.length_b 98.835 _cell.length_c 94.252 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 109 A CYS 122 1_555 B SG CYS 49 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf3 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf4 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 5 B CYS 88 1_555 B SG CYS 16 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 B SG CYS 12 B CYS 95 1_555 B SG CYS 26 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 28 B CYS 111 1_555 B SG CYS 41 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc1 A OE1 GLU 55 A GLU 70 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc2 A O ASN 57 A ASN 72 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A O GLU 60 A GLU 75 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc4 A OE1 GLU 62 A GLU 77 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc5 A OE2 GLU 65 A GLU 80 1_555 D NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc6 D NA NA . A NA 302 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TNO _atom_sites.fract_transf_matrix[1][1] 0.010118 _atom_sites.fract_transf_matrix[1][2] 0.005842 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UNL A 1 301 298 UNL UNL . D 4 NA A 1 302 300 NA NA . E 5 NHE A 1 303 301 NHE NHE . F 5 NHE A 1 304 302 NHE NHE . G 6 HOH A 1 401 1135 HOH HOH . G 6 HOH A 2 402 1189 HOH HOH . G 6 HOH A 3 403 1043 HOH HOH . G 6 HOH A 4 404 1130 HOH HOH . G 6 HOH A 5 405 1127 HOH HOH . G 6 HOH A 6 406 1070 HOH HOH . G 6 HOH A 7 407 1210 HOH HOH . G 6 HOH A 8 408 1155 HOH HOH . G 6 HOH A 9 409 1082 HOH HOH . G 6 HOH A 10 410 1251 HOH HOH . G 6 HOH A 11 411 1022 HOH HOH . G 6 HOH A 12 412 1025 HOH HOH . G 6 HOH A 13 413 1191 HOH HOH . G 6 HOH A 14 414 1062 HOH HOH . G 6 HOH A 15 415 1148 HOH HOH . G 6 HOH A 16 416 1249 HOH HOH . G 6 HOH A 17 417 1175 HOH HOH . G 6 HOH A 18 418 1224 HOH HOH . G 6 HOH A 19 419 1237 HOH HOH . G 6 HOH A 20 420 1232 HOH HOH . G 6 HOH A 21 421 1197 HOH HOH . G 6 HOH A 22 422 1140 HOH HOH . G 6 HOH A 23 423 1206 HOH HOH . G 6 HOH A 24 424 1193 HOH HOH . G 6 HOH A 25 425 1041 HOH HOH . G 6 HOH A 26 426 1171 HOH HOH . G 6 HOH A 27 427 1068 HOH HOH . G 6 HOH A 28 428 1088 HOH HOH . G 6 HOH A 29 429 1089 HOH HOH . G 6 HOH A 30 430 1007 HOH HOH . G 6 HOH A 31 431 1233 HOH HOH . G 6 HOH A 32 432 1122 HOH HOH . G 6 HOH A 33 433 1176 HOH HOH . G 6 HOH A 34 434 1060 HOH HOH . G 6 HOH A 35 435 1126 HOH HOH . G 6 HOH A 36 436 1227 HOH HOH . G 6 HOH A 37 437 1096 HOH HOH . G 6 HOH A 38 438 1253 HOH HOH . G 6 HOH A 39 439 1124 HOH HOH . G 6 HOH A 40 440 1036 HOH HOH . G 6 HOH A 41 441 1146 HOH HOH . G 6 HOH A 42 442 1143 HOH HOH . G 6 HOH A 43 443 1190 HOH HOH . G 6 HOH A 44 444 1195 HOH HOH . G 6 HOH A 45 445 1033 HOH HOH . G 6 HOH A 46 446 1145 HOH HOH . G 6 HOH A 47 447 1252 HOH HOH . G 6 HOH A 48 448 1104 HOH HOH . G 6 HOH A 49 449 1037 HOH HOH . G 6 HOH A 50 450 1157 HOH HOH . G 6 HOH A 51 451 1164 HOH HOH . G 6 HOH A 52 452 1243 HOH HOH . G 6 HOH A 53 453 1038 HOH HOH . G 6 HOH A 54 454 1018 HOH HOH . G 6 HOH A 55 455 1009 HOH HOH . G 6 HOH A 56 456 1223 HOH HOH . G 6 HOH A 57 457 1103 HOH HOH . G 6 HOH A 58 458 1125 HOH HOH . G 6 HOH A 59 459 1003 HOH HOH . G 6 HOH A 60 460 1057 HOH HOH . G 6 HOH A 61 461 1044 HOH HOH . G 6 HOH A 62 462 1077 HOH HOH . G 6 HOH A 63 463 1136 HOH HOH . G 6 HOH A 64 464 1202 HOH HOH . G 6 HOH A 65 465 1031 HOH HOH . G 6 HOH A 66 466 1090 HOH HOH . G 6 HOH A 67 467 1156 HOH HOH . G 6 HOH A 68 468 1004 HOH HOH . G 6 HOH A 69 469 1185 HOH HOH . G 6 HOH A 70 470 1137 HOH HOH . G 6 HOH A 71 471 1010 HOH HOH . G 6 HOH A 72 472 1187 HOH HOH . G 6 HOH A 73 473 1047 HOH HOH . G 6 HOH A 74 474 1105 HOH HOH . G 6 HOH A 75 475 1100 HOH HOH . G 6 HOH A 76 476 1046 HOH HOH . G 6 HOH A 77 477 1117 HOH HOH . G 6 HOH A 78 478 1067 HOH HOH . G 6 HOH A 79 479 1201 HOH HOH . G 6 HOH A 80 480 1204 HOH HOH . G 6 HOH A 81 481 1209 HOH HOH . G 6 HOH A 82 482 1182 HOH HOH . G 6 HOH A 83 483 1042 HOH HOH . G 6 HOH A 84 484 1027 HOH HOH . G 6 HOH A 85 485 1231 HOH HOH . G 6 HOH A 86 486 1063 HOH HOH . G 6 HOH A 87 487 1174 HOH HOH . G 6 HOH A 88 488 1250 HOH HOH . G 6 HOH A 89 489 1066 HOH HOH . G 6 HOH A 90 490 1055 HOH HOH . G 6 HOH A 91 491 1192 HOH HOH . G 6 HOH A 92 492 1172 HOH HOH . G 6 HOH A 93 493 1011 HOH HOH . G 6 HOH A 94 494 1098 HOH HOH . G 6 HOH A 95 495 1123 HOH HOH . G 6 HOH A 96 496 1012 HOH HOH . G 6 HOH A 97 497 1196 HOH HOH . G 6 HOH A 98 498 1005 HOH HOH . G 6 HOH A 99 499 1181 HOH HOH . G 6 HOH A 100 500 1024 HOH HOH . G 6 HOH A 101 501 1102 HOH HOH . G 6 HOH A 102 502 1002 HOH HOH . G 6 HOH A 103 503 1030 HOH HOH . G 6 HOH A 104 504 1225 HOH HOH . G 6 HOH A 105 505 1064 HOH HOH . G 6 HOH A 106 506 1194 HOH HOH . G 6 HOH A 107 507 1034 HOH HOH . G 6 HOH A 108 508 1052 HOH HOH . G 6 HOH A 109 509 1128 HOH HOH . G 6 HOH A 110 510 1228 HOH HOH . G 6 HOH A 111 511 1039 HOH HOH . G 6 HOH A 112 512 1001 HOH HOH . G 6 HOH A 113 513 1061 HOH HOH . G 6 HOH A 114 514 1234 HOH HOH . G 6 HOH A 115 515 1215 HOH HOH . G 6 HOH A 116 516 1129 HOH HOH . G 6 HOH A 117 517 1029 HOH HOH . G 6 HOH A 118 518 1065 HOH HOH . G 6 HOH A 119 519 1028 HOH HOH . G 6 HOH A 120 520 1154 HOH HOH . G 6 HOH A 121 521 1166 HOH HOH . G 6 HOH A 122 522 1040 HOH HOH . G 6 HOH A 123 523 1079 HOH HOH . G 6 HOH A 124 524 1101 HOH HOH . G 6 HOH A 125 525 1056 HOH HOH . G 6 HOH A 126 526 1094 HOH HOH . G 6 HOH A 127 527 1158 HOH HOH . G 6 HOH A 128 528 1238 HOH HOH . G 6 HOH A 129 529 1213 HOH HOH . G 6 HOH A 130 530 1013 HOH HOH . G 6 HOH A 131 531 1120 HOH HOH . G 6 HOH A 132 532 1058 HOH HOH . G 6 HOH A 133 533 1184 HOH HOH . G 6 HOH A 134 534 1050 HOH HOH . G 6 HOH A 135 535 1165 HOH HOH . G 6 HOH A 136 536 1115 HOH HOH . G 6 HOH A 137 537 1045 HOH HOH . G 6 HOH A 138 538 1008 HOH HOH . G 6 HOH A 139 539 1170 HOH HOH . G 6 HOH A 140 540 1081 HOH HOH . G 6 HOH A 141 541 1169 HOH HOH . G 6 HOH A 142 542 1118 HOH HOH . G 6 HOH A 143 543 1235 HOH HOH . G 6 HOH A 144 544 1121 HOH HOH . G 6 HOH A 145 545 1178 HOH HOH . G 6 HOH A 146 546 1095 HOH HOH . G 6 HOH A 147 547 1216 HOH HOH . G 6 HOH A 148 548 1139 HOH HOH . G 6 HOH A 149 549 1229 HOH HOH . G 6 HOH A 150 550 1142 HOH HOH . G 6 HOH A 151 551 1160 HOH HOH . G 6 HOH A 152 552 1188 HOH HOH . G 6 HOH A 153 553 1242 HOH HOH . G 6 HOH A 154 554 1014 HOH HOH . G 6 HOH A 155 555 1255 HOH HOH . G 6 HOH A 156 556 1219 HOH HOH . G 6 HOH A 157 557 1119 HOH HOH . G 6 HOH A 158 558 1240 HOH HOH . G 6 HOH A 159 559 1208 HOH HOH . G 6 HOH A 160 560 1152 HOH HOH . G 6 HOH A 161 561 1183 HOH HOH . G 6 HOH A 162 562 1230 HOH HOH . G 6 HOH A 163 563 1173 HOH HOH . G 6 HOH A 164 564 1211 HOH HOH . G 6 HOH A 165 565 1207 HOH HOH . G 6 HOH A 166 566 1214 HOH HOH . G 6 HOH A 167 567 1091 HOH HOH . G 6 HOH A 168 568 1144 HOH HOH . G 6 HOH A 169 569 1186 HOH HOH . G 6 HOH A 170 570 1248 HOH HOH . G 6 HOH A 171 571 1141 HOH HOH . G 6 HOH A 172 572 1203 HOH HOH . G 6 HOH A 173 573 1246 HOH HOH . G 6 HOH A 174 574 1205 HOH HOH . G 6 HOH A 175 575 1198 HOH HOH . G 6 HOH A 176 576 1116 HOH HOH . G 6 HOH A 177 577 1254 HOH HOH . G 6 HOH A 178 578 1159 HOH HOH . G 6 HOH A 179 579 1241 HOH HOH . G 6 HOH A 180 580 1226 HOH HOH . G 6 HOH A 181 581 1092 HOH HOH . G 6 HOH A 182 582 1218 HOH HOH . G 6 HOH A 183 583 1153 HOH HOH . G 6 HOH A 184 584 1097 HOH HOH . H 6 HOH B 1 201 1244 HOH HOH . H 6 HOH B 2 202 1071 HOH HOH . H 6 HOH B 3 203 1074 HOH HOH . H 6 HOH B 4 204 1015 HOH HOH . H 6 HOH B 5 205 1035 HOH HOH . H 6 HOH B 6 206 1220 HOH HOH . H 6 HOH B 7 207 1180 HOH HOH . H 6 HOH B 8 208 1149 HOH HOH . H 6 HOH B 9 209 1017 HOH HOH . H 6 HOH B 10 210 1032 HOH HOH . H 6 HOH B 11 211 1049 HOH HOH . H 6 HOH B 12 212 1245 HOH HOH . H 6 HOH B 13 213 1161 HOH HOH . H 6 HOH B 14 214 1109 HOH HOH . H 6 HOH B 15 215 1221 HOH HOH . H 6 HOH B 16 216 1110 HOH HOH . H 6 HOH B 17 217 1021 HOH HOH . H 6 HOH B 18 218 1236 HOH HOH . H 6 HOH B 19 219 1199 HOH HOH . H 6 HOH B 20 220 1239 HOH HOH . H 6 HOH B 21 221 1163 HOH HOH . H 6 HOH B 22 222 1019 HOH HOH . H 6 HOH B 23 223 1112 HOH HOH . H 6 HOH B 24 224 1099 HOH HOH . H 6 HOH B 25 225 1200 HOH HOH . H 6 HOH B 26 226 1053 HOH HOH . H 6 HOH B 27 227 1131 HOH HOH . H 6 HOH B 28 228 1048 HOH HOH . H 6 HOH B 29 229 1256 HOH HOH . H 6 HOH B 30 230 1054 HOH HOH . H 6 HOH B 31 231 1086 HOH HOH . H 6 HOH B 32 232 1114 HOH HOH . H 6 HOH B 33 233 1016 HOH HOH . H 6 HOH B 34 234 1085 HOH HOH . H 6 HOH B 35 235 1111 HOH HOH . H 6 HOH B 36 236 1168 HOH HOH . H 6 HOH B 37 237 1083 HOH HOH . H 6 HOH B 38 238 1113 HOH HOH . H 6 HOH B 39 239 1051 HOH HOH . H 6 HOH B 40 240 1069 HOH HOH . H 6 HOH B 41 241 1084 HOH HOH . H 6 HOH B 42 242 1073 HOH HOH . H 6 HOH B 43 243 1217 HOH HOH . H 6 HOH B 44 244 1132 HOH HOH . H 6 HOH B 45 245 1106 HOH HOH . H 6 HOH B 46 246 1087 HOH HOH . H 6 HOH B 47 247 1133 HOH HOH . H 6 HOH B 48 248 1072 HOH HOH . H 6 HOH B 49 249 1078 HOH HOH . H 6 HOH B 50 250 1076 HOH HOH . H 6 HOH B 51 251 1108 HOH HOH . H 6 HOH B 52 252 1059 HOH HOH . H 6 HOH B 53 253 1222 HOH HOH . H 6 HOH B 54 254 1075 HOH HOH . H 6 HOH B 55 255 1020 HOH HOH . H 6 HOH B 56 256 1162 HOH HOH . H 6 HOH B 57 257 1147 HOH HOH . H 6 HOH B 58 258 1212 HOH HOH . H 6 HOH B 59 259 1179 HOH HOH . H 6 HOH B 60 260 1177 HOH HOH . H 6 HOH B 61 261 1138 HOH HOH . H 6 HOH B 62 262 1167 HOH HOH . H 6 HOH B 63 263 1247 HOH HOH . H 6 HOH B 64 264 1023 HOH HOH . H 6 HOH B 65 265 1093 HOH HOH . H 6 HOH B 66 266 1107 HOH HOH . H 6 HOH B 67 267 1080 HOH HOH . H 6 HOH B 68 268 1150 HOH HOH . H 6 HOH B 69 269 1134 HOH HOH . H 6 HOH B 70 270 1151 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.659 _atom_site.Cartn_y -19.524 _atom_site.Cartn_z -13.428 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.54 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #