data_5TNZ # _model_server_result.job_id XL74badadHOs5wOgWMQO3Q _model_server_result.datetime_utc '2024-11-07 00:15:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tnz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5TNZ # _exptl.entry_id 5TNZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TNZ _cell.length_a 83.694 _cell.length_b 83.694 _cell.length_c 126.956 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TNZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -41.847 -72.48113 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 41.847 -72.48113 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 134 A LEU 266 1_555 C NA NA . A NA 502 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc2 A O ASN 136 A ASN 268 1_555 C NA NA . A NA 502 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A OG SER 240 A SER 372 1_555 C NA NA . A NA 502 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc4 A OE2 GLU 244 A GLU 376 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 C NA NA . A NA 502 1_555 D O HOH . A HOH 683 2_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc6 C NA NA . A NA 502 1_555 D O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TNZ _atom_sites.fract_transf_matrix[1][1] 0.011948 _atom_sites.fract_transf_matrix[1][2] 0.006898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 501 461 MES MES . C 3 NA A 1 502 462 NA NA . D 4 HOH A 1 601 530 HOH HOH . D 4 HOH A 2 602 499 HOH HOH . D 4 HOH A 3 603 571 HOH HOH . D 4 HOH A 4 604 573 HOH HOH . D 4 HOH A 5 605 524 HOH HOH . D 4 HOH A 6 606 583 HOH HOH . D 4 HOH A 7 607 486 HOH HOH . D 4 HOH A 8 608 469 HOH HOH . D 4 HOH A 9 609 545 HOH HOH . D 4 HOH A 10 610 541 HOH HOH . D 4 HOH A 11 611 477 HOH HOH . D 4 HOH A 12 612 482 HOH HOH . D 4 HOH A 13 613 485 HOH HOH . D 4 HOH A 14 614 531 HOH HOH . D 4 HOH A 15 615 467 HOH HOH . D 4 HOH A 16 616 516 HOH HOH . D 4 HOH A 17 617 534 HOH HOH . D 4 HOH A 18 618 476 HOH HOH . D 4 HOH A 19 619 493 HOH HOH . D 4 HOH A 20 620 488 HOH HOH . D 4 HOH A 21 621 479 HOH HOH . D 4 HOH A 22 622 586 HOH HOH . D 4 HOH A 23 623 509 HOH HOH . D 4 HOH A 24 624 504 HOH HOH . D 4 HOH A 25 625 514 HOH HOH . D 4 HOH A 26 626 464 HOH HOH . D 4 HOH A 27 627 555 HOH HOH . D 4 HOH A 28 628 503 HOH HOH . D 4 HOH A 29 629 553 HOH HOH . D 4 HOH A 30 630 556 HOH HOH . D 4 HOH A 31 631 492 HOH HOH . D 4 HOH A 32 632 544 HOH HOH . D 4 HOH A 33 633 480 HOH HOH . D 4 HOH A 34 634 500 HOH HOH . D 4 HOH A 35 635 473 HOH HOH . D 4 HOH A 36 636 506 HOH HOH . D 4 HOH A 37 637 496 HOH HOH . D 4 HOH A 38 638 470 HOH HOH . D 4 HOH A 39 639 487 HOH HOH . D 4 HOH A 40 640 584 HOH HOH . D 4 HOH A 41 641 489 HOH HOH . D 4 HOH A 42 642 528 HOH HOH . D 4 HOH A 43 643 577 HOH HOH . D 4 HOH A 44 644 519 HOH HOH . D 4 HOH A 45 645 463 HOH HOH . D 4 HOH A 46 646 538 HOH HOH . D 4 HOH A 47 647 564 HOH HOH . D 4 HOH A 48 648 512 HOH HOH . D 4 HOH A 49 649 475 HOH HOH . D 4 HOH A 50 650 562 HOH HOH . D 4 HOH A 51 651 551 HOH HOH . D 4 HOH A 52 652 484 HOH HOH . D 4 HOH A 53 653 472 HOH HOH . D 4 HOH A 54 654 523 HOH HOH . D 4 HOH A 55 655 478 HOH HOH . D 4 HOH A 56 656 542 HOH HOH . D 4 HOH A 57 657 572 HOH HOH . D 4 HOH A 58 658 510 HOH HOH . D 4 HOH A 59 659 491 HOH HOH . D 4 HOH A 60 660 567 HOH HOH . D 4 HOH A 61 661 579 HOH HOH . D 4 HOH A 62 662 465 HOH HOH . D 4 HOH A 63 663 588 HOH HOH . D 4 HOH A 64 664 539 HOH HOH . D 4 HOH A 65 665 507 HOH HOH . D 4 HOH A 66 666 558 HOH HOH . D 4 HOH A 67 667 575 HOH HOH . D 4 HOH A 68 668 526 HOH HOH . D 4 HOH A 69 669 495 HOH HOH . D 4 HOH A 70 670 587 HOH HOH . D 4 HOH A 71 671 468 HOH HOH . D 4 HOH A 72 672 578 HOH HOH . D 4 HOH A 73 673 481 HOH HOH . D 4 HOH A 74 674 563 HOH HOH . D 4 HOH A 75 675 490 HOH HOH . D 4 HOH A 76 676 527 HOH HOH . D 4 HOH A 77 677 505 HOH HOH . D 4 HOH A 78 678 533 HOH HOH . D 4 HOH A 79 679 535 HOH HOH . D 4 HOH A 80 680 515 HOH HOH . D 4 HOH A 81 681 546 HOH HOH . D 4 HOH A 82 682 549 HOH HOH . D 4 HOH A 83 683 494 HOH HOH . D 4 HOH A 84 684 497 HOH HOH . D 4 HOH A 85 685 550 HOH HOH . D 4 HOH A 86 686 501 HOH HOH . D 4 HOH A 87 687 548 HOH HOH . D 4 HOH A 88 688 508 HOH HOH . D 4 HOH A 89 689 554 HOH HOH . D 4 HOH A 90 690 582 HOH HOH . D 4 HOH A 91 691 543 HOH HOH . D 4 HOH A 92 692 502 HOH HOH . D 4 HOH A 93 693 561 HOH HOH . D 4 HOH A 94 694 471 HOH HOH . D 4 HOH A 95 695 552 HOH HOH . D 4 HOH A 96 696 483 HOH HOH . D 4 HOH A 97 697 521 HOH HOH . D 4 HOH A 98 698 569 HOH HOH . D 4 HOH A 99 699 560 HOH HOH . D 4 HOH A 100 700 557 HOH HOH . D 4 HOH A 101 701 529 HOH HOH . D 4 HOH A 102 702 474 HOH HOH . D 4 HOH A 103 703 547 HOH HOH . D 4 HOH A 104 704 590 HOH HOH . D 4 HOH A 105 705 540 HOH HOH . D 4 HOH A 106 706 513 HOH HOH . D 4 HOH A 107 707 565 HOH HOH . D 4 HOH A 108 708 522 HOH HOH . D 4 HOH A 109 709 574 HOH HOH . D 4 HOH A 110 710 585 HOH HOH . D 4 HOH A 111 711 466 HOH HOH . D 4 HOH A 112 712 536 HOH HOH . D 4 HOH A 113 713 566 HOH HOH . D 4 HOH A 114 714 581 HOH HOH . D 4 HOH A 115 715 518 HOH HOH . D 4 HOH A 116 716 517 HOH HOH . D 4 HOH A 117 717 559 HOH HOH . D 4 HOH A 118 718 568 HOH HOH . D 4 HOH A 119 719 537 HOH HOH . D 4 HOH A 120 720 580 HOH HOH . D 4 HOH A 121 721 570 HOH HOH . D 4 HOH A 122 722 576 HOH HOH . D 4 HOH A 123 723 589 HOH HOH . D 4 HOH A 124 724 520 HOH HOH . D 4 HOH A 125 725 532 HOH HOH . D 4 HOH A 126 726 498 HOH HOH . D 4 HOH A 127 727 525 HOH HOH . D 4 HOH A 128 728 511 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.996 _atom_site.Cartn_y -33.372 _atom_site.Cartn_z -4.671 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #