data_5TO0 # _model_server_result.job_id pnXn8EWBqU58T9grs9sIMw _model_server_result.datetime_utc '2025-07-07 12:12:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5to0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5TO0 # _exptl.entry_id 5TO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TO0 _cell.length_a 83.824 _cell.length_b 83.824 _cell.length_c 127.464 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 41.912 72.593713 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -41.912 72.593713 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 5TO0 _atom_sites.fract_transf_matrix[1][1] 0.01193 _atom_sites.fract_transf_matrix[1][2] 0.006888 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MES A 1 501 461 MES MES . C 3 HOH A 1 601 517 HOH HOH . C 3 HOH A 2 602 479 HOH HOH . C 3 HOH A 3 603 520 HOH HOH . C 3 HOH A 4 604 523 HOH HOH . C 3 HOH A 5 605 481 HOH HOH . C 3 HOH A 6 606 529 HOH HOH . C 3 HOH A 7 607 505 HOH HOH . C 3 HOH A 8 608 507 HOH HOH . C 3 HOH A 9 609 471 HOH HOH . C 3 HOH A 10 610 466 HOH HOH . C 3 HOH A 11 611 488 HOH HOH . C 3 HOH A 12 612 467 HOH HOH . C 3 HOH A 13 613 482 HOH HOH . C 3 HOH A 14 614 478 HOH HOH . C 3 HOH A 15 615 462 HOH HOH . C 3 HOH A 16 616 465 HOH HOH . C 3 HOH A 17 617 474 HOH HOH . C 3 HOH A 18 618 476 HOH HOH . C 3 HOH A 19 619 483 HOH HOH . C 3 HOH A 20 620 486 HOH HOH . C 3 HOH A 21 621 464 HOH HOH . C 3 HOH A 22 622 527 HOH HOH . C 3 HOH A 23 623 519 HOH HOH . C 3 HOH A 24 624 473 HOH HOH . C 3 HOH A 25 625 525 HOH HOH . C 3 HOH A 26 626 472 HOH HOH . C 3 HOH A 27 627 492 HOH HOH . C 3 HOH A 28 628 506 HOH HOH . C 3 HOH A 29 629 477 HOH HOH . C 3 HOH A 30 630 463 HOH HOH . C 3 HOH A 31 631 504 HOH HOH . C 3 HOH A 32 632 468 HOH HOH . C 3 HOH A 33 633 484 HOH HOH . C 3 HOH A 34 634 508 HOH HOH . C 3 HOH A 35 635 515 HOH HOH . C 3 HOH A 36 636 502 HOH HOH . C 3 HOH A 37 637 533 HOH HOH . C 3 HOH A 38 638 535 HOH HOH . C 3 HOH A 39 639 513 HOH HOH . C 3 HOH A 40 640 475 HOH HOH . C 3 HOH A 41 641 516 HOH HOH . C 3 HOH A 42 642 501 HOH HOH . C 3 HOH A 43 643 487 HOH HOH . C 3 HOH A 44 644 512 HOH HOH . C 3 HOH A 45 645 528 HOH HOH . C 3 HOH A 46 646 495 HOH HOH . C 3 HOH A 47 647 489 HOH HOH . C 3 HOH A 48 648 498 HOH HOH . C 3 HOH A 49 649 469 HOH HOH . C 3 HOH A 50 650 521 HOH HOH . C 3 HOH A 51 651 526 HOH HOH . C 3 HOH A 52 652 522 HOH HOH . C 3 HOH A 53 653 534 HOH HOH . C 3 HOH A 54 654 518 HOH HOH . C 3 HOH A 55 655 496 HOH HOH . C 3 HOH A 56 656 530 HOH HOH . C 3 HOH A 57 657 470 HOH HOH . C 3 HOH A 58 658 500 HOH HOH . C 3 HOH A 59 659 485 HOH HOH . C 3 HOH A 60 660 491 HOH HOH . C 3 HOH A 61 661 532 HOH HOH . C 3 HOH A 62 662 493 HOH HOH . C 3 HOH A 63 663 480 HOH HOH . C 3 HOH A 64 664 499 HOH HOH . C 3 HOH A 65 665 494 HOH HOH . C 3 HOH A 66 666 511 HOH HOH . C 3 HOH A 67 667 514 HOH HOH . C 3 HOH A 68 668 509 HOH HOH . C 3 HOH A 69 669 536 HOH HOH . C 3 HOH A 70 670 497 HOH HOH . C 3 HOH A 71 671 503 HOH HOH . C 3 HOH A 72 672 490 HOH HOH . C 3 HOH A 73 673 524 HOH HOH . C 3 HOH A 74 674 510 HOH HOH . C 3 HOH A 75 675 531 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . B 2 7.742 50.284 25.309 1 23.99 ? O1 MES 501 A 1 HETATM 2 C C2 MES . . . B 2 7.245 48.972 25.601 1 22.31 ? C2 MES 501 A 1 HETATM 3 C C3 MES . . . B 2 7.753 48.567 26.98 1 27.97 ? C3 MES 501 A 1 HETATM 4 N N4 MES . . . B 2 9.23 48.562 26.977 1 29.09 ? N4 MES 501 A 1 HETATM 5 C C5 MES . . . B 2 9.785 49.881 26.588 1 24.33 ? C5 MES 501 A 1 HETATM 6 C C6 MES . . . B 2 9.167 50.352 25.269 1 24.08 ? C6 MES 501 A 1 HETATM 7 C C7 MES . . . B 2 9.745 48.149 28.3 1 30.58 ? C7 MES 501 A 1 HETATM 8 C C8 MES . . . B 2 10.517 46.832 28.226 1 27.93 ? C8 MES 501 A 1 HETATM 9 S S MES . . . B 2 11.291 46.429 29.658 1 29.68 ? S MES 501 A 1 HETATM 10 O O1S MES . . . B 2 10.621 45.334 30.38 1 26.84 ? O1S MES 501 A 1 HETATM 11 O O2S MES . . . B 2 12.611 45.973 29.218 1 32.44 ? O2S MES 501 A 1 HETATM 12 O O3S MES . . . B 2 11.422 47.573 30.583 1 33.63 ? O3S MES 501 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #