data_5TO8 # _model_server_result.job_id wJTver-hV2Wgk_BbnA3ZOw _model_server_result.datetime_utc '2025-01-03 14:26:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5to8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5TO8 # _exptl.entry_id 5TO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.579 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 25-(methylsulfonyl)-8-(trifluoromethyl)-5,17,18,21,22,23,24,25-octahydro-12H-7,11-(azeno)-16,13-(metheno)pyrido[3,2-i]pyrrolo[1,2-q][1,3,7,11,17]pentaazacyclohenicosin-20(6H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.85 _cell.angle_gamma 90 _cell.entry_id 5TO8 _cell.length_a 37.625 _cell.length_b 93.565 _cell.length_c 43.214 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H26 F3 N7 O3 S' _chem_comp.formula_weight 561.579 _chem_comp.id 7FM _chem_comp.mon_nstd_flag . _chem_comp.name 25-(methylsulfonyl)-8-(trifluoromethyl)-5,17,18,21,22,23,24,25-octahydro-12H-7,11-(azeno)-16,13-(metheno)pyrido[3,2-i]pyrrolo[1,2-q][1,3,7,11,17]pentaazacyclohenicosin-20(6H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C36 S28 7FM sing 1 n n O34 S28 7FM doub 2 n n S28 O35 7FM doub 3 n n S28 N26 7FM sing 4 n n C23 N22 7FM doub 5 n y C23 C24 7FM sing 6 n y N22 C21 7FM sing 7 n y C24 C25 7FM doub 8 n y C21 N26 7FM sing 9 n n C21 C20 7FM doub 10 n y N26 C27 7FM sing 11 n n C25 C20 7FM sing 12 n y C20 C19 7FM sing 13 n n C27 C29 7FM sing 14 n n C19 N18 7FM sing 15 n n F39 C07 7FM sing 16 n n C29 C32 7FM sing 17 n n N18 C04 7FM sing 18 n n F38 C07 7FM sing 19 n n C07 F37 7FM sing 20 n n C07 C05 7FM sing 21 n n C32 C33 7FM sing 22 n n C04 C05 7FM doub 23 n y C04 N03 7FM sing 24 n y C33 C30 7FM sing 25 n n C05 C06 7FM sing 26 n y N03 C02 7FM doub 27 n y C11 C10 7FM doub 28 n y C11 C12 7FM sing 29 n y C06 N01 7FM doub 30 n y C10 C09 7FM sing 31 n y C30 O31 7FM doub 32 n n C30 N15 7FM sing 33 n n C02 N01 7FM sing 34 n y C02 N08 7FM sing 35 n n C12 N15 7FM sing 36 n n C12 C13 7FM doub 37 n y N15 C16 7FM sing 38 n n C09 N08 7FM sing 39 n n C09 C14 7FM doub 40 n y C13 C14 7FM sing 41 n y C13 C17 7FM sing 42 n n C16 C17 7FM sing 43 n n C10 H1 7FM sing 44 n n C17 H2 7FM sing 45 n n C17 H3 7FM sing 46 n n C24 H4 7FM sing 47 n n C06 H5 7FM sing 48 n n N08 H6 7FM sing 49 n n C11 H7 7FM sing 50 n n C14 H8 7FM sing 51 n n C16 H9 7FM sing 52 n n C16 H10 7FM sing 53 n n N18 H11 7FM sing 54 n n C19 H12 7FM sing 55 n n C19 H13 7FM sing 56 n n C23 H14 7FM sing 57 n n C25 H15 7FM sing 58 n n C27 H16 7FM sing 59 n n C27 H17 7FM sing 60 n n C29 H18 7FM sing 61 n n C29 H19 7FM sing 62 n n C32 H20 7FM sing 63 n n C32 H21 7FM sing 64 n n C33 H22 7FM sing 65 n n C33 H23 7FM sing 66 n n C36 H24 7FM sing 67 n n C36 H25 7FM sing 68 n n C36 H26 7FM sing 69 n n # _atom_sites.entry_id 5TO8 _atom_sites.fract_transf_matrix[1][1] 0.026578 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001786 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7FM A 1 701 1 7FM LIG . C 3 HOH A 1 801 49 HOH HOH . C 3 HOH A 2 802 39 HOH HOH . C 3 HOH A 3 803 57 HOH HOH . C 3 HOH A 4 804 70 HOH HOH . C 3 HOH A 5 805 63 HOH HOH . C 3 HOH A 6 806 38 HOH HOH . C 3 HOH A 7 807 40 HOH HOH . C 3 HOH A 8 808 42 HOH HOH . C 3 HOH A 9 809 46 HOH HOH . C 3 HOH A 10 810 43 HOH HOH . C 3 HOH A 11 811 5 HOH HOH . C 3 HOH A 12 812 32 HOH HOH . C 3 HOH A 13 813 16 HOH HOH . C 3 HOH A 14 814 26 HOH HOH . C 3 HOH A 15 815 34 HOH HOH . C 3 HOH A 16 816 82 HOH HOH . C 3 HOH A 17 817 33 HOH HOH . C 3 HOH A 18 818 60 HOH HOH . C 3 HOH A 19 819 15 HOH HOH . C 3 HOH A 20 820 25 HOH HOH . C 3 HOH A 21 821 55 HOH HOH . C 3 HOH A 22 822 13 HOH HOH . C 3 HOH A 23 823 22 HOH HOH . C 3 HOH A 24 824 69 HOH HOH . C 3 HOH A 25 825 56 HOH HOH . C 3 HOH A 26 826 12 HOH HOH . C 3 HOH A 27 827 30 HOH HOH . C 3 HOH A 28 828 6 HOH HOH . C 3 HOH A 29 829 71 HOH HOH . C 3 HOH A 30 830 44 HOH HOH . C 3 HOH A 31 831 64 HOH HOH . C 3 HOH A 32 832 20 HOH HOH . C 3 HOH A 33 833 27 HOH HOH . C 3 HOH A 34 834 23 HOH HOH . C 3 HOH A 35 835 80 HOH HOH . C 3 HOH A 36 836 28 HOH HOH . C 3 HOH A 37 837 21 HOH HOH . C 3 HOH A 38 838 4 HOH HOH . C 3 HOH A 39 839 66 HOH HOH . C 3 HOH A 40 840 78 HOH HOH . C 3 HOH A 41 841 53 HOH HOH . C 3 HOH A 42 842 18 HOH HOH . C 3 HOH A 43 843 47 HOH HOH . C 3 HOH A 44 844 7 HOH HOH . C 3 HOH A 45 845 29 HOH HOH . C 3 HOH A 46 846 1 HOH HOH . C 3 HOH A 47 847 3 HOH HOH . C 3 HOH A 48 848 2 HOH HOH . C 3 HOH A 49 849 8 HOH HOH . C 3 HOH A 50 850 31 HOH HOH . C 3 HOH A 51 851 10 HOH HOH . C 3 HOH A 52 852 19 HOH HOH . C 3 HOH A 53 853 81 HOH HOH . C 3 HOH A 54 854 59 HOH HOH . C 3 HOH A 55 855 68 HOH HOH . C 3 HOH A 56 856 41 HOH HOH . C 3 HOH A 57 857 83 HOH HOH . C 3 HOH A 58 858 35 HOH HOH . C 3 HOH A 59 859 45 HOH HOH . C 3 HOH A 60 860 37 HOH HOH . C 3 HOH A 61 861 14 HOH HOH . C 3 HOH A 62 862 51 HOH HOH . C 3 HOH A 63 863 50 HOH HOH . C 3 HOH A 64 864 48 HOH HOH . C 3 HOH A 65 865 11 HOH HOH . C 3 HOH A 66 866 36 HOH HOH . C 3 HOH A 67 867 77 HOH HOH . C 3 HOH A 68 868 24 HOH HOH . C 3 HOH A 69 869 52 HOH HOH . C 3 HOH A 70 870 72 HOH HOH . C 3 HOH A 71 871 67 HOH HOH . C 3 HOH A 72 872 54 HOH HOH . C 3 HOH A 73 873 17 HOH HOH . C 3 HOH A 74 874 9 HOH HOH . C 3 HOH A 75 875 73 HOH HOH . C 3 HOH A 76 876 61 HOH HOH . C 3 HOH A 77 877 65 HOH HOH . C 3 HOH A 78 878 75 HOH HOH . C 3 HOH A 79 879 79 HOH HOH . C 3 HOH A 80 880 62 HOH HOH . C 3 HOH A 81 881 76 HOH HOH . C 3 HOH A 82 882 58 HOH HOH . C 3 HOH A 83 883 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7FM . . . B 2 -2.061 -10.359 40.57 1 20.42 ? C10 7FM 701 A 1 HETATM 2 C C13 7FM . . . B 2 -3.117 -11.795 42.672 1 20.84 ? C13 7FM 701 A 1 HETATM 3 C C17 7FM . . . B 2 -3.864 -12.61 43.68 1 22.93 ? C17 7FM 701 A 1 HETATM 4 C C20 7FM . . . B 2 -0.697 -10.329 36.575 1 19.08 ? C20 7FM 701 A 1 HETATM 5 C C21 7FM . . . B 2 -1.821 -10.908 35.989 1 21.52 ? C21 7FM 701 A 1 HETATM 6 C C24 7FM . . . B 2 -1.66 -8.194 35.953 1 21 ? C24 7FM 701 A 1 HETATM 7 N N01 7FM . . . B 2 2.03 -9.034 41.465 1 16.34 ? N01 7FM 701 A 1 HETATM 8 C C02 7FM . . . B 2 0.939 -9.668 41.012 1 21.34 ? C02 7FM 701 A 1 HETATM 9 N N03 7FM . . . B 2 0.798 -10.08 39.725 1 18.24 ? N03 7FM 701 A 1 HETATM 10 C C04 7FM . . . B 2 1.772 -9.843 38.83 1 19.2 ? C04 7FM 701 A 1 HETATM 11 C C05 7FM . . . B 2 2.92 -9.193 39.233 1 18.88 ? C05 7FM 701 A 1 HETATM 12 C C06 7FM . . . B 2 2.991 -8.802 40.558 1 19.7 ? C06 7FM 701 A 1 HETATM 13 C C07 7FM . . . B 2 4.034 -8.869 38.315 1 22.45 ? C07 7FM 701 A 1 HETATM 14 N N08 7FM . . . B 2 -0.083 -9.881 41.951 1 18.23 ? N08 7FM 701 A 1 HETATM 15 C C09 7FM . . . B 2 -1.338 -10.467 41.776 1 21.09 ? C09 7FM 701 A 1 HETATM 16 C C11 7FM . . . B 2 -3.302 -10.967 40.424 1 16.68 ? C11 7FM 701 A 1 HETATM 17 C C12 7FM . . . B 2 -3.829 -11.687 41.476 1 21.34 ? C12 7FM 701 A 1 HETATM 18 C C14 7FM . . . B 2 -1.88 -11.195 42.837 1 20.28 ? C14 7FM 701 A 1 HETATM 19 N N15 7FM . . . B 2 -5.04 -12.413 41.584 1 26.49 ? N15 7FM 701 A 1 HETATM 20 C C16 7FM . . . B 2 -5.246 -12.699 43.018 1 26.59 ? C16 7FM 701 A 1 HETATM 21 N N18 7FM . . . B 2 1.516 -10.293 37.549 1 18.62 ? N18 7FM 701 A 1 HETATM 22 C C19 7FM . . . B 2 0.406 -11.143 37.209 1 21.45 ? C19 7FM 701 A 1 HETATM 23 N N22 7FM . . . B 2 -2.842 -10.22 35.405 1 21.34 ? N22 7FM 701 A 1 HETATM 24 C C23 7FM . . . B 2 -2.736 -8.869 35.4 1 20.18 ? C23 7FM 701 A 1 HETATM 25 C C25 7FM . . . B 2 -0.624 -8.933 36.538 1 19.56 ? C25 7FM 701 A 1 HETATM 26 N N26 7FM . . . B 2 -1.967 -12.341 35.995 1 18.22 ? N26 7FM 701 A 1 HETATM 27 C C27 7FM . . . B 2 -2.568 -13.087 37.155 1 19.18 ? C27 7FM 701 A 1 HETATM 28 S S28 7FM . . . B 2 -1.469 -13.193 34.567 1 22.68 ? S28 7FM 701 A 1 HETATM 29 C C29 7FM . . . B 2 -4.044 -12.731 37.348 1 20 ? C29 7FM 701 A 1 HETATM 30 C C30 7FM . . . B 2 -5.967 -12.865 40.643 1 27.46 ? C30 7FM 701 A 1 HETATM 31 O O31 7FM . . . B 2 -6.972 -13.505 40.969 1 30.17 ? O31 7FM 701 A 1 HETATM 32 C C32 7FM . . . B 2 -4.62 -13.413 38.59 1 20.38 ? C32 7FM 701 A 1 HETATM 33 C C33 7FM . . . B 2 -5.801 -12.62 39.151 1 23.86 ? C33 7FM 701 A 1 HETATM 34 O O34 7FM . . . B 2 -0.552 -12.369 33.794 1 21.33 ? O34 7FM 701 A 1 HETATM 35 O O35 7FM . . . B 2 -1.143 -14.564 34.89 1 23.6 ? O35 7FM 701 A 1 HETATM 36 C C36 7FM . . . B 2 -3.053 -13.214 33.759 1 23.04 ? C36 7FM 701 A 1 HETATM 37 F F37 7FM . . . B 2 5.049 -8.144 38.871 1 23.76 ? F37 7FM 701 A 1 HETATM 38 F F38 7FM . . . B 2 4.612 -9.943 37.739 1 21.02 ? F38 7FM 701 A 1 HETATM 39 F F39 7FM . . . B 2 3.535 -8.108 37.31 1 19.83 ? F39 7FM 701 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #