data_5TOL # _model_server_result.job_id m5hcnuzhDLByZmnV7qtXNQ _model_server_result.datetime_utc '2025-04-25 15:52:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5TOL # _exptl.entry_id 5TOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[(4aR,7aR)-2-amino-4,4a,5,6-tetrahydro-7aH-furo[2,3-d][1,3]thiazin-7a-yl]-4-fluorophenyl}-5-bromopyridine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TOL _cell.length_a 101.49 _cell.length_b 101.49 _cell.length_c 171.237 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 203 1_555 A SG CYS 378 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 236 A CYS 265 1_555 A SG CYS 401 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 A SG CYS 288 A CYS 317 1_555 A SG CYS 338 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C18 H16 Br F N4 O2 S' _chem_comp.formula_weight 451.313 _chem_comp.id 7H3 _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[(4aR,7aR)-2-amino-4,4a,5,6-tetrahydro-7aH-furo[2,3-d][1,3]thiazin-7a-yl]-4-fluorophenyl}-5-bromopyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 7H3 sing 1 n n C19 C18 7H3 sing 2 n n C20 O21 7H3 sing 3 n n F27 C3 7H3 sing 4 n n C18 C22 7H3 sing 5 n n C18 C17 7H3 sing 6 n n C22 S23 7H3 sing 7 n n O21 C17 7H3 sing 8 n n C3 C2 7H3 doub 9 n y C3 C4 7H3 sing 10 n y C17 C4 7H3 sing 11 n n C17 N25 7H3 sing 12 n n C2 C1 7H3 sing 13 n y C4 C5 7H3 doub 14 n y S23 C24 7H3 sing 15 n n N25 C24 7H3 doub 16 n n C1 C6 7H3 doub 17 n y C5 C6 7H3 sing 18 n y C24 N26 7H3 sing 19 n n C6 N7 7H3 sing 20 n n N7 C8 7H3 sing 21 n n O9 C8 7H3 doub 22 n n C8 C10 7H3 sing 23 n n C10 N15 7H3 sing 24 n y C10 C11 7H3 doub 25 n y N15 C14 7H3 doub 26 n y C11 C12 7H3 sing 27 n y C14 C13 7H3 sing 28 n y C12 C13 7H3 doub 29 n y C13 BR16 7H3 sing 30 n n C18 H1 7H3 sing 31 n n C19 H2 7H3 sing 32 n n C19 H3 7H3 sing 33 n n C20 H4 7H3 sing 34 n n C20 H5 7H3 sing 35 n n C22 H6 7H3 sing 36 n n C22 H7 7H3 sing 37 n n C11 H9 7H3 sing 38 n n C12 H10 7H3 sing 39 n n C1 H11 7H3 sing 40 n n C2 H12 7H3 sing 41 n n C5 H13 7H3 sing 42 n n N7 H14 7H3 sing 43 n n C14 H15 7H3 sing 44 n n N26 H18 7H3 sing 45 n n N26 H19 7H3 sing 46 n n # _atom_sites.entry_id 5TOL _atom_sites.fract_transf_matrix[1][1] 0.009853 _atom_sites.fract_transf_matrix[1][2] 0.005689 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00584 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7H3 A 1 501 1 7H3 LG1 . C 3 HOH A 1 601 133 HOH HOH . C 3 HOH A 2 602 41 HOH HOH . C 3 HOH A 3 603 47 HOH HOH . C 3 HOH A 4 604 87 HOH HOH . C 3 HOH A 5 605 29 HOH HOH . C 3 HOH A 6 606 86 HOH HOH . C 3 HOH A 7 607 104 HOH HOH . C 3 HOH A 8 608 34 HOH HOH . C 3 HOH A 9 609 12 HOH HOH . C 3 HOH A 10 610 118 HOH HOH . C 3 HOH A 11 611 26 HOH HOH . C 3 HOH A 12 612 25 HOH HOH . C 3 HOH A 13 613 32 HOH HOH . C 3 HOH A 14 614 39 HOH HOH . C 3 HOH A 15 615 33 HOH HOH . C 3 HOH A 16 616 117 HOH HOH . C 3 HOH A 17 617 28 HOH HOH . C 3 HOH A 18 618 61 HOH HOH . C 3 HOH A 19 619 11 HOH HOH . C 3 HOH A 20 620 40 HOH HOH . C 3 HOH A 21 621 17 HOH HOH . C 3 HOH A 22 622 13 HOH HOH . C 3 HOH A 23 623 18 HOH HOH . C 3 HOH A 24 624 2 HOH HOH . C 3 HOH A 25 625 7 HOH HOH . C 3 HOH A 26 626 65 HOH HOH . C 3 HOH A 27 627 76 HOH HOH . C 3 HOH A 28 628 99 HOH HOH . C 3 HOH A 29 629 5 HOH HOH . C 3 HOH A 30 630 111 HOH HOH . C 3 HOH A 31 631 44 HOH HOH . C 3 HOH A 32 632 115 HOH HOH . C 3 HOH A 33 633 50 HOH HOH . C 3 HOH A 34 634 67 HOH HOH . C 3 HOH A 35 635 27 HOH HOH . C 3 HOH A 36 636 103 HOH HOH . C 3 HOH A 37 637 14 HOH HOH . C 3 HOH A 38 638 52 HOH HOH . C 3 HOH A 39 639 10 HOH HOH . C 3 HOH A 40 640 97 HOH HOH . C 3 HOH A 41 641 30 HOH HOH . C 3 HOH A 42 642 37 HOH HOH . C 3 HOH A 43 643 70 HOH HOH . C 3 HOH A 44 644 21 HOH HOH . C 3 HOH A 45 645 42 HOH HOH . C 3 HOH A 46 646 75 HOH HOH . C 3 HOH A 47 647 9 HOH HOH . C 3 HOH A 48 648 110 HOH HOH . C 3 HOH A 49 649 89 HOH HOH . C 3 HOH A 50 650 60 HOH HOH . C 3 HOH A 51 651 96 HOH HOH . C 3 HOH A 52 652 119 HOH HOH . C 3 HOH A 53 653 31 HOH HOH . C 3 HOH A 54 654 77 HOH HOH . C 3 HOH A 55 655 20 HOH HOH . C 3 HOH A 56 656 59 HOH HOH . C 3 HOH A 57 657 8 HOH HOH . C 3 HOH A 58 658 46 HOH HOH . C 3 HOH A 59 659 74 HOH HOH . C 3 HOH A 60 660 35 HOH HOH . C 3 HOH A 61 661 43 HOH HOH . C 3 HOH A 62 662 16 HOH HOH . C 3 HOH A 63 663 112 HOH HOH . C 3 HOH A 64 664 58 HOH HOH . C 3 HOH A 65 665 48 HOH HOH . C 3 HOH A 66 666 57 HOH HOH . C 3 HOH A 67 667 91 HOH HOH . C 3 HOH A 68 668 38 HOH HOH . C 3 HOH A 69 669 22 HOH HOH . C 3 HOH A 70 670 78 HOH HOH . C 3 HOH A 71 671 116 HOH HOH . C 3 HOH A 72 672 129 HOH HOH . C 3 HOH A 73 673 81 HOH HOH . C 3 HOH A 74 674 45 HOH HOH . C 3 HOH A 75 675 19 HOH HOH . C 3 HOH A 76 676 93 HOH HOH . C 3 HOH A 77 677 66 HOH HOH . C 3 HOH A 78 678 102 HOH HOH . C 3 HOH A 79 679 84 HOH HOH . C 3 HOH A 80 680 80 HOH HOH . C 3 HOH A 81 681 90 HOH HOH . C 3 HOH A 82 682 4 HOH HOH . C 3 HOH A 83 683 100 HOH HOH . C 3 HOH A 84 684 92 HOH HOH . C 3 HOH A 85 685 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 7H3 . . . B 2 -24.919 47.699 27.124 1 61.85 ? C13 7H3 501 A 1 HETATM 2 C C18 7H3 . . . B 2 -25.671 53.591 18.503 1 33.69 ? C18 7H3 501 A 1 HETATM 3 C C17 7H3 . . . B 2 -26.577 53.831 19.714 1 34.7 ? C17 7H3 501 A 1 HETATM 4 C C19 7H3 . . . B 2 -25.554 55.016 17.948 1 33.4 ? C19 7H3 501 A 1 HETATM 5 C C20 7H3 . . . B 2 -26.99 55.513 18.139 1 32.96 ? C20 7H3 501 A 1 HETATM 6 C C22 7H3 . . . B 2 -24.304 52.991 18.808 1 33.33 ? C22 7H3 501 A 1 HETATM 7 C C24 7H3 . . . B 2 -24.862 54.304 21.351 1 34.41 ? C24 7H3 501 A 1 HETATM 8 C C11 7H3 . . . B 2 -25.874 49.441 25.694 1 60.81 ? C11 7H3 501 A 1 HETATM 9 C C12 7H3 . . . B 2 -25.252 49.048 26.893 1 61.84 ? C12 7H3 501 A 1 HETATM 10 C C1 7H3 . . . B 2 -28.304 49.99 20.998 1 34.85 ? C1 7H3 501 A 1 HETATM 11 C C2 7H3 . . . B 2 -28.75 50.632 19.825 1 33.82 ? C2 7H3 501 A 1 HETATM 12 C C3 7H3 . . . B 2 -28.186 51.862 19.416 1 35.23 ? C3 7H3 501 A 1 HETATM 13 C C4 7H3 . . . B 2 -27.179 52.494 20.17 1 33.87 ? C4 7H3 501 A 1 HETATM 14 C C5 7H3 . . . B 2 -26.748 51.826 21.324 1 33.92 ? C5 7H3 501 A 1 HETATM 15 C C6 7H3 . . . B 2 -27.278 50.6 21.75 1 36.11 ? C6 7H3 501 A 1 HETATM 16 N N7 7H3 . . . B 2 -26.792 50.073 22.89 1 40.46 ? N7 7H3 501 A 1 HETATM 17 C C8 7H3 . . . B 2 -26.834 48.836 23.441 1 55.17 ? C8 7H3 501 A 1 HETATM 18 O O9 7H3 . . . B 2 -27.482 47.936 22.911 1 48.78 ? O9 7H3 501 A 1 HETATM 19 C C10 7H3 . . . B 2 -26.155 48.494 24.718 1 57.7 ? C10 7H3 501 A 1 HETATM 20 C C14 7H3 . . . B 2 -25.24 46.799 26.097 1 61.11 ? C14 7H3 501 A 1 HETATM 21 N N15 7H3 . . . B 2 -25.834 47.207 24.944 1 60.79 ? N15 7H3 501 A 1 HETATM 22 BR BR16 7H3 . . . B 2 -24.115 47.082 28.73 1 71.08 ? BR16 7H3 501 A 1 HETATM 23 O O21 7H3 . . . B 2 -27.595 54.693 19.166 1 34.34 ? O21 7H3 501 A 1 HETATM 24 S S23 7H3 . . . B 2 -23.593 53.829 20.231 1 34.59 ? S23 7H3 501 A 1 HETATM 25 N N25 7H3 . . . B 2 -26.014 54.577 20.84 1 34.45 ? N25 7H3 501 A 1 HETATM 26 N N26 7H3 . . . B 2 -24.486 55.035 22.408 1 32.64 ? N26 7H3 501 A 1 HETATM 27 F F27 7H3 . . . B 2 -28.662 52.41 18.284 1 34.81 ? F27 7H3 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #