data_5TOZ # _model_server_result.job_id KE11vUSnpRHLjh52IKaAsw _model_server_result.datetime_utc '2024-10-18 04:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5toz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5TOZ # _exptl.entry_id 5TOZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.36 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{(2S,5R)-2-methyl-5-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-1-yl}propan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TOZ _cell.length_a 47.868 _cell.length_b 75.64 _cell.length_c 89.811 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TOZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 909 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C9 _struct_conn.ptnr2_label_comp_id 7H4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 7H4 _struct_conn.ptnr2_auth_seq_id 1201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.811 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H21 N5 O' _chem_comp.formula_weight 287.36 _chem_comp.id 7H4 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{(2S,5R)-2-methyl-5-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]piperidin-1-yl}propan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TOZ _atom_sites.fract_transf_matrix[1][1] 0.020891 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7H4 A 1 1201 1 7H4 PFE . C 3 SO4 A 1 1202 1 SO4 SO4 . D 4 HOH A 1 1301 35 HOH HOH . D 4 HOH A 2 1302 21 HOH HOH . D 4 HOH A 3 1303 238 HOH HOH . D 4 HOH A 4 1304 176 HOH HOH . D 4 HOH A 5 1305 17 HOH HOH . D 4 HOH A 6 1306 241 HOH HOH . D 4 HOH A 7 1307 201 HOH HOH . D 4 HOH A 8 1308 249 HOH HOH . D 4 HOH A 9 1309 1 HOH HOH . D 4 HOH A 10 1310 4 HOH HOH . D 4 HOH A 11 1311 78 HOH HOH . D 4 HOH A 12 1312 153 HOH HOH . D 4 HOH A 13 1313 60 HOH HOH . D 4 HOH A 14 1314 28 HOH HOH . D 4 HOH A 15 1315 100 HOH HOH . D 4 HOH A 16 1316 65 HOH HOH . D 4 HOH A 17 1317 36 HOH HOH . D 4 HOH A 18 1318 128 HOH HOH . D 4 HOH A 19 1319 47 HOH HOH . D 4 HOH A 20 1320 104 HOH HOH . D 4 HOH A 21 1321 114 HOH HOH . D 4 HOH A 22 1322 3 HOH HOH . D 4 HOH A 23 1323 33 HOH HOH . D 4 HOH A 24 1324 107 HOH HOH . D 4 HOH A 25 1325 31 HOH HOH . D 4 HOH A 26 1326 12 HOH HOH . D 4 HOH A 27 1327 24 HOH HOH . D 4 HOH A 28 1328 63 HOH HOH . D 4 HOH A 29 1329 250 HOH HOH . D 4 HOH A 30 1330 40 HOH HOH . D 4 HOH A 31 1331 56 HOH HOH . D 4 HOH A 32 1332 183 HOH HOH . D 4 HOH A 33 1333 286 HOH HOH . D 4 HOH A 34 1334 155 HOH HOH . D 4 HOH A 35 1335 118 HOH HOH . D 4 HOH A 36 1336 19 HOH HOH . D 4 HOH A 37 1337 18 HOH HOH . D 4 HOH A 38 1338 179 HOH HOH . D 4 HOH A 39 1339 220 HOH HOH . D 4 HOH A 40 1340 237 HOH HOH . D 4 HOH A 41 1341 26 HOH HOH . D 4 HOH A 42 1342 221 HOH HOH . D 4 HOH A 43 1343 190 HOH HOH . D 4 HOH A 44 1344 51 HOH HOH . D 4 HOH A 45 1345 22 HOH HOH . D 4 HOH A 46 1346 29 HOH HOH . D 4 HOH A 47 1347 126 HOH HOH . D 4 HOH A 48 1348 129 HOH HOH . D 4 HOH A 49 1349 23 HOH HOH . D 4 HOH A 50 1350 273 HOH HOH . D 4 HOH A 51 1351 186 HOH HOH . D 4 HOH A 52 1352 253 HOH HOH . D 4 HOH A 53 1353 68 HOH HOH . D 4 HOH A 54 1354 234 HOH HOH . D 4 HOH A 55 1355 245 HOH HOH . D 4 HOH A 56 1356 173 HOH HOH . D 4 HOH A 57 1357 224 HOH HOH . D 4 HOH A 58 1358 257 HOH HOH . D 4 HOH A 59 1359 216 HOH HOH . D 4 HOH A 60 1360 97 HOH HOH . D 4 HOH A 61 1361 16 HOH HOH . D 4 HOH A 62 1362 203 HOH HOH . D 4 HOH A 63 1363 66 HOH HOH . D 4 HOH A 64 1364 158 HOH HOH . D 4 HOH A 65 1365 117 HOH HOH . D 4 HOH A 66 1366 135 HOH HOH . D 4 HOH A 67 1367 59 HOH HOH . D 4 HOH A 68 1368 34 HOH HOH . D 4 HOH A 69 1369 112 HOH HOH . D 4 HOH A 70 1370 243 HOH HOH . D 4 HOH A 71 1371 209 HOH HOH . D 4 HOH A 72 1372 184 HOH HOH . D 4 HOH A 73 1373 272 HOH HOH . D 4 HOH A 74 1374 148 HOH HOH . D 4 HOH A 75 1375 206 HOH HOH . D 4 HOH A 76 1376 244 HOH HOH . D 4 HOH A 77 1377 25 HOH HOH . D 4 HOH A 78 1378 54 HOH HOH . D 4 HOH A 79 1379 111 HOH HOH . D 4 HOH A 80 1380 53 HOH HOH . D 4 HOH A 81 1381 222 HOH HOH . D 4 HOH A 82 1382 20 HOH HOH . D 4 HOH A 83 1383 161 HOH HOH . D 4 HOH A 84 1384 122 HOH HOH . D 4 HOH A 85 1385 191 HOH HOH . D 4 HOH A 86 1386 81 HOH HOH . D 4 HOH A 87 1387 80 HOH HOH . D 4 HOH A 88 1388 99 HOH HOH . D 4 HOH A 89 1389 67 HOH HOH . D 4 HOH A 90 1390 108 HOH HOH . D 4 HOH A 91 1391 125 HOH HOH . D 4 HOH A 92 1392 10 HOH HOH . D 4 HOH A 93 1393 58 HOH HOH . D 4 HOH A 94 1394 204 HOH HOH . D 4 HOH A 95 1395 101 HOH HOH . D 4 HOH A 96 1396 195 HOH HOH . D 4 HOH A 97 1397 174 HOH HOH . D 4 HOH A 98 1398 236 HOH HOH . D 4 HOH A 99 1399 277 HOH HOH . D 4 HOH A 100 1400 279 HOH HOH . D 4 HOH A 101 1401 281 HOH HOH . D 4 HOH A 102 1402 90 HOH HOH . D 4 HOH A 103 1403 156 HOH HOH . D 4 HOH A 104 1404 260 HOH HOH . D 4 HOH A 105 1405 157 HOH HOH . D 4 HOH A 106 1406 120 HOH HOH . D 4 HOH A 107 1407 208 HOH HOH . D 4 HOH A 108 1408 145 HOH HOH . D 4 HOH A 109 1409 8 HOH HOH . D 4 HOH A 110 1410 102 HOH HOH . D 4 HOH A 111 1411 200 HOH HOH . D 4 HOH A 112 1412 288 HOH HOH . D 4 HOH A 113 1413 45 HOH HOH . D 4 HOH A 114 1414 255 HOH HOH . D 4 HOH A 115 1415 50 HOH HOH . D 4 HOH A 116 1416 131 HOH HOH . D 4 HOH A 117 1417 27 HOH HOH . D 4 HOH A 118 1418 11 HOH HOH . D 4 HOH A 119 1419 57 HOH HOH . D 4 HOH A 120 1420 69 HOH HOH . D 4 HOH A 121 1421 283 HOH HOH . D 4 HOH A 122 1422 41 HOH HOH . D 4 HOH A 123 1423 61 HOH HOH . D 4 HOH A 124 1424 89 HOH HOH . D 4 HOH A 125 1425 14 HOH HOH . D 4 HOH A 126 1426 232 HOH HOH . D 4 HOH A 127 1427 154 HOH HOH . D 4 HOH A 128 1428 85 HOH HOH . D 4 HOH A 129 1429 219 HOH HOH . D 4 HOH A 130 1430 124 HOH HOH . D 4 HOH A 131 1431 263 HOH HOH . D 4 HOH A 132 1432 197 HOH HOH . D 4 HOH A 133 1433 247 HOH HOH . D 4 HOH A 134 1434 280 HOH HOH . D 4 HOH A 135 1435 92 HOH HOH . D 4 HOH A 136 1436 160 HOH HOH . D 4 HOH A 137 1437 71 HOH HOH . D 4 HOH A 138 1438 49 HOH HOH . D 4 HOH A 139 1439 110 HOH HOH . D 4 HOH A 140 1440 231 HOH HOH . D 4 HOH A 141 1441 278 HOH HOH . D 4 HOH A 142 1442 210 HOH HOH . D 4 HOH A 143 1443 198 HOH HOH . D 4 HOH A 144 1444 74 HOH HOH . D 4 HOH A 145 1445 213 HOH HOH . D 4 HOH A 146 1446 225 HOH HOH . D 4 HOH A 147 1447 284 HOH HOH . D 4 HOH A 148 1448 75 HOH HOH . D 4 HOH A 149 1449 94 HOH HOH . D 4 HOH A 150 1450 196 HOH HOH . D 4 HOH A 151 1451 271 HOH HOH . D 4 HOH A 152 1452 265 HOH HOH . D 4 HOH A 153 1453 38 HOH HOH . D 4 HOH A 154 1454 93 HOH HOH . D 4 HOH A 155 1455 139 HOH HOH . D 4 HOH A 156 1456 52 HOH HOH . D 4 HOH A 157 1457 83 HOH HOH . D 4 HOH A 158 1458 252 HOH HOH . D 4 HOH A 159 1459 13 HOH HOH . D 4 HOH A 160 1460 95 HOH HOH . D 4 HOH A 161 1461 55 HOH HOH . D 4 HOH A 162 1462 242 HOH HOH . D 4 HOH A 163 1463 62 HOH HOH . D 4 HOH A 164 1464 239 HOH HOH . D 4 HOH A 165 1465 48 HOH HOH . D 4 HOH A 166 1466 227 HOH HOH . D 4 HOH A 167 1467 76 HOH HOH . D 4 HOH A 168 1468 207 HOH HOH . D 4 HOH A 169 1469 189 HOH HOH . D 4 HOH A 170 1470 194 HOH HOH . D 4 HOH A 171 1471 163 HOH HOH . D 4 HOH A 172 1472 287 HOH HOH . D 4 HOH A 173 1473 248 HOH HOH . D 4 HOH A 174 1474 91 HOH HOH . D 4 HOH A 175 1475 175 HOH HOH . D 4 HOH A 176 1476 39 HOH HOH . D 4 HOH A 177 1477 138 HOH HOH . D 4 HOH A 178 1478 121 HOH HOH . D 4 HOH A 179 1479 168 HOH HOH . D 4 HOH A 180 1480 123 HOH HOH . D 4 HOH A 181 1481 136 HOH HOH . D 4 HOH A 182 1482 132 HOH HOH . D 4 HOH A 183 1483 164 HOH HOH . D 4 HOH A 184 1484 254 HOH HOH . D 4 HOH A 185 1485 106 HOH HOH . D 4 HOH A 186 1486 293 HOH HOH . D 4 HOH A 187 1487 285 HOH HOH . D 4 HOH A 188 1488 30 HOH HOH . D 4 HOH A 189 1489 144 HOH HOH . D 4 HOH A 190 1490 270 HOH HOH . D 4 HOH A 191 1491 150 HOH HOH . D 4 HOH A 192 1492 262 HOH HOH . D 4 HOH A 193 1493 116 HOH HOH . D 4 HOH A 194 1494 77 HOH HOH . D 4 HOH A 195 1495 127 HOH HOH . D 4 HOH A 196 1496 185 HOH HOH . D 4 HOH A 197 1497 109 HOH HOH . D 4 HOH A 198 1498 178 HOH HOH . D 4 HOH A 199 1499 282 HOH HOH . D 4 HOH A 200 1500 133 HOH HOH . D 4 HOH A 201 1501 86 HOH HOH . D 4 HOH A 202 1502 290 HOH HOH . D 4 HOH A 203 1503 192 HOH HOH . D 4 HOH A 204 1504 276 HOH HOH . D 4 HOH A 205 1505 141 HOH HOH . D 4 HOH A 206 1506 151 HOH HOH . D 4 HOH A 207 1507 115 HOH HOH . D 4 HOH A 208 1508 137 HOH HOH . D 4 HOH A 209 1509 79 HOH HOH . D 4 HOH A 210 1510 87 HOH HOH . D 4 HOH A 211 1511 130 HOH HOH . D 4 HOH A 212 1512 119 HOH HOH . D 4 HOH A 213 1513 275 HOH HOH . D 4 HOH A 214 1514 193 HOH HOH . D 4 HOH A 215 1515 187 HOH HOH . D 4 HOH A 216 1516 42 HOH HOH . D 4 HOH A 217 1517 240 HOH HOH . D 4 HOH A 218 1518 180 HOH HOH . D 4 HOH A 219 1519 72 HOH HOH . D 4 HOH A 220 1520 181 HOH HOH . D 4 HOH A 221 1521 70 HOH HOH . D 4 HOH A 222 1522 167 HOH HOH . D 4 HOH A 223 1523 64 HOH HOH . D 4 HOH A 224 1524 165 HOH HOH . D 4 HOH A 225 1525 140 HOH HOH . D 4 HOH A 226 1526 292 HOH HOH . D 4 HOH A 227 1527 105 HOH HOH . D 4 HOH A 228 1528 113 HOH HOH . D 4 HOH A 229 1529 291 HOH HOH . D 4 HOH A 230 1530 171 HOH HOH . D 4 HOH A 231 1531 215 HOH HOH . D 4 HOH A 232 1532 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 7H4 . . . B 2 1.153 12.078 -3.567 1 24.65 ? N3 7H4 1201 A 1 HETATM 2 C C4 7H4 . . . B 2 -2.754 17.864 -4.456 1 36.15 ? C4 7H4 1201 A 1 HETATM 3 N N2 7H4 . . . B 2 -1.034 16.144 -4.383 1 33.37 ? N2 7H4 1201 A 1 HETATM 4 C C7 7H4 . . . B 2 0.058 20.476 -6.106 1 38.58 ? C7 7H4 1201 A 1 HETATM 5 C C6 7H4 . . . B 2 -0.613 18.056 -5.771 1 35.8 ? C6 7H4 1201 A 1 HETATM 6 C C9 7H4 . . . B 2 -0.519 21.978 -8.001 1 38.31 ? C9 7H4 1201 A 1 HETATM 7 C C13 7H4 . . . B 2 -0.142 11.81 -4.084 1 24.12 ? C13 7H4 1201 A 1 HETATM 8 C C8 7H4 . . . B 2 -0.262 21.938 -6.503 1 40.42 ? C8 7H4 1201 A 1 HETATM 9 N N5 7H4 . . . B 2 1.223 16.187 -3.533 1 28.99 ? N5 7H4 1201 A 1 HETATM 10 C C1 7H4 . . . B 2 -3.124 19.209 -7.362 1 36.06 ? C1 7H4 1201 A 1 HETATM 11 C C2 7H4 . . . B 2 -2.427 19.758 -6.121 1 33.79 ? C2 7H4 1201 A 1 HETATM 12 C C3 7H4 . . . B 2 -3.082 19.323 -4.815 1 34.4 ? C3 7H4 1201 A 1 HETATM 13 C C5 7H4 . . . B 2 -1.257 17.579 -4.477 1 34.93 ? C5 7H4 1201 A 1 HETATM 14 N N1 7H4 . . . B 2 -0.95 19.462 -6.054 1 35.42 ? N1 7H4 1201 A 1 HETATM 15 O O1 7H4 . . . B 2 1.228 20.249 -5.758 1 38.07 ? O1 7H4 1201 A 1 HETATM 16 C C10 7H4 . . . B 2 0.107 15.484 -3.945 1 31.51 ? C10 7H4 1201 A 1 HETATM 17 C C11 7H4 . . . B 2 0.103 14.052 -3.949 1 26.8 ? C11 7H4 1201 A 1 HETATM 18 C C12 7H4 . . . B 2 -0.791 13.008 -4.338 1 23.11 ? C12 7H4 1201 A 1 HETATM 19 C C14 7H4 . . . B 2 1.311 13.437 -3.484 1 26.29 ? C14 7H4 1201 A 1 HETATM 20 N N4 7H4 . . . B 2 2.449 14.103 -3.062 1 29.75 ? N4 7H4 1201 A 1 HETATM 21 C C15 7H4 . . . B 2 2.303 15.454 -3.133 1 29.23 ? C15 7H4 1201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #