data_5TPA # _model_server_result.job_id YhS5bED7axu0w1tTFdikyQ _model_server_result.datetime_utc '2024-12-23 04:08:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tpa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5TPA # _exptl.entry_id 5TPA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.777 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2R)-2-(2-{[5-chloro-3-(trifluoromethyl)-1H-pyrazol-1-yl]methyl}-7-methyl-4-oxo-4H-pyrido[1,2-a]pyrimidin-6-yl)cyclopropane-1-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TPA _cell.length_a 55.757 _cell.length_b 90.239 _cell.length_c 122.658 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 A CYS 31 1_555 A SG CYS 57 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 38 A CYS 38 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 A SG CYS 228 A CYS 228 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 29 B CYS 29 1_555 B SG CYS 63 B CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 45 B CYS 45 1_555 B SG CYS 64 B CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 237 B CYS 237 1_555 B SG CYS 291 B CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C18 H13 Cl F3 N5 O' _chem_comp.formula_weight 407.777 _chem_comp.id 7H2 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2R)-2-(2-{[5-chloro-3-(trifluoromethyl)-1H-pyrazol-1-yl]methyl}-7-methyl-4-oxo-4H-pyrido[1,2-a]pyrimidin-6-yl)cyclopropane-1-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 7H2 sing 1 n n C14 C15 7H2 sing 2 n n C13 C12 7H2 sing 3 n n C13 C15 7H2 sing 4 n n C1 C2 7H2 sing 5 n n C12 C2 7H2 doub 6 n n C12 N11 7H2 sing 7 n n O10 C9 7H2 doub 8 n n C2 C3 7H2 sing 9 n n C15 C16 7H2 sing 10 n n C16 N17 7H2 trip 11 n n C9 N11 7H2 sing 12 n n C9 C8 7H2 sing 13 n n N11 C5 7H2 sing 14 n n C3 C4 7H2 doub 15 n n C8 C7 7H2 doub 16 n n C5 C4 7H2 sing 17 n n C5 N6 7H2 doub 18 n n CL1 C20 7H2 sing 19 n n C7 N6 7H2 sing 20 n n C7 C18 7H2 sing 21 n n C18 N19 7H2 sing 22 n n C20 N19 7H2 sing 23 n y C20 C21 7H2 doub 24 n y N19 N23 7H2 sing 25 n y C21 C22 7H2 sing 26 n y N23 C22 7H2 doub 27 n y C22 C24 7H2 sing 28 n n F25 C24 7H2 sing 29 n n F27 C24 7H2 sing 30 n n C24 F26 7H2 sing 31 n n C4 H1 7H2 sing 32 n n C14 H2 7H2 sing 33 n n C14 H3 7H2 sing 34 n n C8 H4 7H2 sing 35 n n C13 H6 7H2 sing 36 n n C3 H7 7H2 sing 37 n n C1 H8 7H2 sing 38 n n C1 H9 7H2 sing 39 n n C1 H10 7H2 sing 40 n n C15 H11 7H2 sing 41 n n C18 H12 7H2 sing 42 n n C18 H13 7H2 sing 43 n n C21 H14 7H2 sing 44 n n # _atom_sites.entry_id 5TPA _atom_sites.fract_transf_matrix[1][1] 0.017935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GLU A 1 301 1 GLU GLU . D 4 7H2 A 1 302 1 7H2 DRG . E 5 GLY B 1 301 1 GLY GLY . F 6 HOH A 1 401 11 HOH HOH . F 6 HOH A 2 402 39 HOH HOH . F 6 HOH A 3 403 22 HOH HOH . F 6 HOH A 4 404 47 HOH HOH . F 6 HOH A 5 405 87 HOH HOH . F 6 HOH A 6 406 2 HOH HOH . F 6 HOH A 7 407 7 HOH HOH . F 6 HOH A 8 408 4 HOH HOH . F 6 HOH A 9 409 21 HOH HOH . F 6 HOH A 10 410 110 HOH HOH . F 6 HOH A 11 411 46 HOH HOH . F 6 HOH A 12 412 56 HOH HOH . F 6 HOH A 13 413 91 HOH HOH . F 6 HOH A 14 414 18 HOH HOH . F 6 HOH A 15 415 88 HOH HOH . F 6 HOH A 16 416 1 HOH HOH . F 6 HOH A 17 417 144 HOH HOH . F 6 HOH A 18 418 120 HOH HOH . F 6 HOH A 19 419 138 HOH HOH . F 6 HOH A 20 420 45 HOH HOH . F 6 HOH A 21 421 38 HOH HOH . F 6 HOH A 22 422 55 HOH HOH . F 6 HOH A 23 423 41 HOH HOH . F 6 HOH A 24 424 107 HOH HOH . F 6 HOH A 25 425 152 HOH HOH . F 6 HOH A 26 426 105 HOH HOH . F 6 HOH A 27 427 25 HOH HOH . F 6 HOH A 28 428 20 HOH HOH . F 6 HOH A 29 429 52 HOH HOH . F 6 HOH A 30 430 42 HOH HOH . F 6 HOH A 31 431 43 HOH HOH . F 6 HOH A 32 432 6 HOH HOH . F 6 HOH A 33 433 50 HOH HOH . F 6 HOH A 34 434 12 HOH HOH . F 6 HOH A 35 435 67 HOH HOH . F 6 HOH A 36 436 8 HOH HOH . F 6 HOH A 37 437 111 HOH HOH . F 6 HOH A 38 438 59 HOH HOH . F 6 HOH A 39 439 142 HOH HOH . F 6 HOH A 40 440 82 HOH HOH . F 6 HOH A 41 441 125 HOH HOH . F 6 HOH A 42 442 134 HOH HOH . F 6 HOH A 43 443 71 HOH HOH . F 6 HOH A 44 444 61 HOH HOH . F 6 HOH A 45 445 3 HOH HOH . F 6 HOH A 46 446 54 HOH HOH . F 6 HOH A 47 447 103 HOH HOH . F 6 HOH A 48 448 104 HOH HOH . F 6 HOH A 49 449 84 HOH HOH . F 6 HOH A 50 450 93 HOH HOH . F 6 HOH A 51 451 77 HOH HOH . F 6 HOH A 52 452 57 HOH HOH . F 6 HOH A 53 453 13 HOH HOH . F 6 HOH A 54 454 70 HOH HOH . F 6 HOH A 55 455 30 HOH HOH . F 6 HOH A 56 456 35 HOH HOH . F 6 HOH A 57 457 64 HOH HOH . F 6 HOH A 58 458 34 HOH HOH . F 6 HOH A 59 459 73 HOH HOH . F 6 HOH A 60 460 14 HOH HOH . F 6 HOH A 61 461 44 HOH HOH . F 6 HOH A 62 462 100 HOH HOH . F 6 HOH A 63 463 101 HOH HOH . F 6 HOH A 64 464 94 HOH HOH . F 6 HOH A 65 465 97 HOH HOH . F 6 HOH A 66 466 19 HOH HOH . F 6 HOH A 67 467 48 HOH HOH . F 6 HOH A 68 468 60 HOH HOH . F 6 HOH A 69 469 74 HOH HOH . F 6 HOH A 70 470 26 HOH HOH . F 6 HOH A 71 471 9 HOH HOH . F 6 HOH A 72 472 119 HOH HOH . F 6 HOH A 73 473 29 HOH HOH . F 6 HOH A 74 474 143 HOH HOH . F 6 HOH A 75 475 118 HOH HOH . F 6 HOH A 76 476 10 HOH HOH . F 6 HOH A 77 477 141 HOH HOH . F 6 HOH A 78 478 28 HOH HOH . F 6 HOH A 79 479 5 HOH HOH . F 6 HOH A 80 480 83 HOH HOH . F 6 HOH A 81 481 145 HOH HOH . F 6 HOH A 82 482 161 HOH HOH . F 6 HOH A 83 483 108 HOH HOH . F 6 HOH A 84 484 15 HOH HOH . F 6 HOH A 85 485 32 HOH HOH . F 6 HOH A 86 486 69 HOH HOH . F 6 HOH A 87 487 98 HOH HOH . F 6 HOH A 88 488 65 HOH HOH . F 6 HOH A 89 489 90 HOH HOH . F 6 HOH A 90 490 158 HOH HOH . F 6 HOH A 91 491 131 HOH HOH . F 6 HOH A 92 492 68 HOH HOH . F 6 HOH A 93 493 130 HOH HOH . F 6 HOH A 94 494 113 HOH HOH . F 6 HOH A 95 495 33 HOH HOH . F 6 HOH A 96 496 115 HOH HOH . F 6 HOH A 97 497 163 HOH HOH . F 6 HOH A 98 498 23 HOH HOH . F 6 HOH A 99 499 123 HOH HOH . F 6 HOH A 100 500 146 HOH HOH . F 6 HOH A 101 501 72 HOH HOH . F 6 HOH A 102 502 157 HOH HOH . F 6 HOH A 103 503 58 HOH HOH . F 6 HOH A 104 504 147 HOH HOH . F 6 HOH A 105 505 76 HOH HOH . G 6 HOH B 1 401 156 HOH HOH . G 6 HOH B 2 402 24 HOH HOH . G 6 HOH B 3 403 89 HOH HOH . G 6 HOH B 4 404 162 HOH HOH . G 6 HOH B 5 405 153 HOH HOH . G 6 HOH B 6 406 159 HOH HOH . G 6 HOH B 7 407 154 HOH HOH . G 6 HOH B 8 408 78 HOH HOH . G 6 HOH B 9 409 62 HOH HOH . G 6 HOH B 10 410 16 HOH HOH . G 6 HOH B 11 411 133 HOH HOH . G 6 HOH B 12 412 17 HOH HOH . G 6 HOH B 13 413 129 HOH HOH . G 6 HOH B 14 414 132 HOH HOH . G 6 HOH B 15 415 160 HOH HOH . G 6 HOH B 16 416 92 HOH HOH . G 6 HOH B 17 417 49 HOH HOH . G 6 HOH B 18 418 121 HOH HOH . G 6 HOH B 19 419 36 HOH HOH . G 6 HOH B 20 420 27 HOH HOH . G 6 HOH B 21 421 31 HOH HOH . G 6 HOH B 22 422 126 HOH HOH . G 6 HOH B 23 423 139 HOH HOH . G 6 HOH B 24 424 75 HOH HOH . G 6 HOH B 25 425 117 HOH HOH . G 6 HOH B 26 426 136 HOH HOH . G 6 HOH B 27 427 116 HOH HOH . G 6 HOH B 28 428 112 HOH HOH . G 6 HOH B 29 429 86 HOH HOH . G 6 HOH B 30 430 122 HOH HOH . G 6 HOH B 31 431 40 HOH HOH . G 6 HOH B 32 432 124 HOH HOH . G 6 HOH B 33 433 128 HOH HOH . G 6 HOH B 34 434 80 HOH HOH . G 6 HOH B 35 435 37 HOH HOH . G 6 HOH B 36 436 66 HOH HOH . G 6 HOH B 37 437 96 HOH HOH . G 6 HOH B 38 438 95 HOH HOH . G 6 HOH B 39 439 63 HOH HOH . G 6 HOH B 40 440 150 HOH HOH . G 6 HOH B 41 441 106 HOH HOH . G 6 HOH B 42 442 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7H2 . . . D 4 18.791 -13.459 -25.834 1 46.36 ? C4 7H2 302 A 1 HETATM 2 C C14 7H2 . . . D 4 16.511 -9.287 -28.036 1 54.49 ? C14 7H2 302 A 1 HETATM 3 C C5 7H2 . . . D 4 17.442 -13.69 -25.904 1 45.41 ? C5 7H2 302 A 1 HETATM 4 C C7 7H2 . . . D 4 15.731 -15.053 -25.284 1 41.1 ? C7 7H2 302 A 1 HETATM 5 C C8 7H2 . . . D 4 14.833 -14.29 -25.97 1 42.87 ? C8 7H2 302 A 1 HETATM 6 C C9 7H2 . . . D 4 15.297 -13.168 -26.63 1 47.61 ? C9 7H2 302 A 1 HETATM 7 C C12 7H2 . . . D 4 17.162 -11.788 -27.242 1 52.43 ? C12 7H2 302 A 1 HETATM 8 C C13 7H2 . . . D 4 16.315 -10.798 -27.995 1 53.37 ? C13 7H2 302 A 1 HETATM 9 C C3 7H2 . . . D 4 19.309 -12.418 -26.479 1 49.37 ? C3 7H2 302 A 1 HETATM 10 C C1 7H2 . . . D 4 19.126 -10.402 -27.859 1 51.84 ? C1 7H2 302 A 1 HETATM 11 C C2 7H2 . . . D 4 18.487 -11.563 -27.177 1 52.07 ? C2 7H2 302 A 1 HETATM 12 N N6 7H2 . . . D 4 16.99 -14.742 -25.276 1 44.69 ? N6 7H2 302 A 1 HETATM 13 O O10 7H2 . . . D 4 14.477 -12.565 -27.233 1 49.71 ? O10 7H2 302 A 1 HETATM 14 N N11 7H2 . . . D 4 16.614 -12.869 -26.604 1 48.89 ? N11 7H2 302 A 1 HETATM 15 C C15 7H2 . . . D 4 15.683 -9.89 -26.943 1 52.59 ? C15 7H2 302 A 1 HETATM 16 C C16 7H2 . . . D 4 14.25 -9.684 -26.855 1 50.22 ? C16 7H2 302 A 1 HETATM 17 N N17 7H2 . . . D 4 13.151 -9.534 -26.72 1 49.6 ? N17 7H2 302 A 1 HETATM 18 C C18 7H2 . . . D 4 15.315 -16.278 -24.558 1 38.49 ? C18 7H2 302 A 1 HETATM 19 N N19 7H2 . . . D 4 14.032 -16.119 -23.949 1 40.23 ? N19 7H2 302 A 1 HETATM 20 C C20 7H2 . . . D 4 12.886 -16.652 -24.318 1 47.26 ? C20 7H2 302 A 1 HETATM 21 C C21 7H2 . . . D 4 11.967 -16.224 -23.451 1 44.72 ? C21 7H2 302 A 1 HETATM 22 C C22 7H2 . . . D 4 12.594 -15.436 -22.536 1 44.1 ? C22 7H2 302 A 1 HETATM 23 N N23 7H2 . . . D 4 13.816 -15.378 -22.848 1 39.62 ? N23 7H2 302 A 1 HETATM 24 C C24 7H2 . . . D 4 11.986 -14.723 -21.402 1 51.82 ? C24 7H2 302 A 1 HETATM 25 F F25 7H2 . . . D 4 10.663 -14.703 -21.548 1 57.74 ? F25 7H2 302 A 1 HETATM 26 F F26 7H2 . . . D 4 12.291 -15.195 -20.183 1 50.28 ? F26 7H2 302 A 1 HETATM 27 F F27 7H2 . . . D 4 12.381 -13.45 -21.419 1 52.85 ? F27 7H2 302 A 1 HETATM 28 CL CL1 7H2 . . . D 4 12.6 -17.661 -25.69 1 54.89 ? CL1 7H2 302 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #