data_5TPG # _model_server_result.job_id 0xvCf7VeWvjoX43I_EZ_yg _model_server_result.datetime_utc '2024-11-23 18:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5TPG # _exptl.entry_id 5TPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.72 _cell.angle_gamma 90 _cell.entry_id 5TPG _cell.length_a 47.198 _cell.length_b 58.161 _cell.length_c 51.567 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 169 A HIS 272 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A NE2 HIS 174 A HIS 277 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 A OE2 GLU 214 A GLU 317 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 B FE FE . A FE 501 1_555 C N TRS . A TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 B FE FE . A FE 501 1_555 C O1 TRS . A TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc6 B FE FE . A FE 501 1_555 C O2 TRS . A TRS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 146 n n C1 C2 CCN sing 147 n n C2 H21 CCN sing 148 n n C2 H22 CCN sing 149 n n C2 H23 CCN sing 150 n n # _atom_sites.entry_id 5TPG _atom_sites.fract_transf_matrix[1][1] 0.021187 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001376 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 501 1 FE FE . C 3 TRS A 1 502 2 TRS TRS . D 4 CCN A 1 503 3 CCN CCN . E 4 CCN A 1 504 4 CCN CCN . F 5 7H5 A 1 505 1 7H5 489 . G 6 HOH A 1 601 119 HOH HOH . G 6 HOH A 2 602 132 HOH HOH . G 6 HOH A 3 603 171 HOH HOH . G 6 HOH A 4 604 150 HOH HOH . G 6 HOH A 5 605 20 HOH HOH . G 6 HOH A 6 606 42 HOH HOH . G 6 HOH A 7 607 160 HOH HOH . G 6 HOH A 8 608 36 HOH HOH . G 6 HOH A 9 609 23 HOH HOH . G 6 HOH A 10 610 149 HOH HOH . G 6 HOH A 11 611 128 HOH HOH . G 6 HOH A 12 612 15 HOH HOH . G 6 HOH A 13 613 14 HOH HOH . G 6 HOH A 14 614 123 HOH HOH . G 6 HOH A 15 615 78 HOH HOH . G 6 HOH A 16 616 104 HOH HOH . G 6 HOH A 17 617 114 HOH HOH . G 6 HOH A 18 618 64 HOH HOH . G 6 HOH A 19 619 145 HOH HOH . G 6 HOH A 20 620 38 HOH HOH . G 6 HOH A 21 621 33 HOH HOH . G 6 HOH A 22 622 55 HOH HOH . G 6 HOH A 23 623 159 HOH HOH . G 6 HOH A 24 624 39 HOH HOH . G 6 HOH A 25 625 53 HOH HOH . G 6 HOH A 26 626 44 HOH HOH . G 6 HOH A 27 627 94 HOH HOH . G 6 HOH A 28 628 59 HOH HOH . G 6 HOH A 29 629 69 HOH HOH . G 6 HOH A 30 630 25 HOH HOH . G 6 HOH A 31 631 108 HOH HOH . G 6 HOH A 32 632 56 HOH HOH . G 6 HOH A 33 633 105 HOH HOH . G 6 HOH A 34 634 65 HOH HOH . G 6 HOH A 35 635 61 HOH HOH . G 6 HOH A 36 636 70 HOH HOH . G 6 HOH A 37 637 17 HOH HOH . G 6 HOH A 38 638 87 HOH HOH . G 6 HOH A 39 639 68 HOH HOH . G 6 HOH A 40 640 45 HOH HOH . G 6 HOH A 41 641 113 HOH HOH . G 6 HOH A 42 642 34 HOH HOH . G 6 HOH A 43 643 57 HOH HOH . G 6 HOH A 44 644 49 HOH HOH . G 6 HOH A 45 645 96 HOH HOH . G 6 HOH A 46 646 80 HOH HOH . G 6 HOH A 47 647 138 HOH HOH . G 6 HOH A 48 648 148 HOH HOH . G 6 HOH A 49 649 147 HOH HOH . G 6 HOH A 50 650 158 HOH HOH . G 6 HOH A 51 651 10 HOH HOH . G 6 HOH A 52 652 109 HOH HOH . G 6 HOH A 53 653 157 HOH HOH . G 6 HOH A 54 654 126 HOH HOH . G 6 HOH A 55 655 43 HOH HOH . G 6 HOH A 56 656 106 HOH HOH . G 6 HOH A 57 657 85 HOH HOH . G 6 HOH A 58 658 32 HOH HOH . G 6 HOH A 59 659 81 HOH HOH . G 6 HOH A 60 660 24 HOH HOH . G 6 HOH A 61 661 46 HOH HOH . G 6 HOH A 62 662 73 HOH HOH . G 6 HOH A 63 663 102 HOH HOH . G 6 HOH A 64 664 16 HOH HOH . G 6 HOH A 65 665 95 HOH HOH . G 6 HOH A 66 666 146 HOH HOH . G 6 HOH A 67 667 1 HOH HOH . G 6 HOH A 68 668 115 HOH HOH . G 6 HOH A 69 669 155 HOH HOH . G 6 HOH A 70 670 7 HOH HOH . G 6 HOH A 71 671 63 HOH HOH . G 6 HOH A 72 672 27 HOH HOH . G 6 HOH A 73 673 28 HOH HOH . G 6 HOH A 74 674 30 HOH HOH . G 6 HOH A 75 675 26 HOH HOH . G 6 HOH A 76 676 2 HOH HOH . G 6 HOH A 77 677 67 HOH HOH . G 6 HOH A 78 678 4 HOH HOH . G 6 HOH A 79 679 11 HOH HOH . G 6 HOH A 80 680 152 HOH HOH . G 6 HOH A 81 681 93 HOH HOH . G 6 HOH A 82 682 101 HOH HOH . G 6 HOH A 83 683 52 HOH HOH . G 6 HOH A 84 684 12 HOH HOH . G 6 HOH A 85 685 35 HOH HOH . G 6 HOH A 86 686 117 HOH HOH . G 6 HOH A 87 687 143 HOH HOH . G 6 HOH A 88 688 47 HOH HOH . G 6 HOH A 89 689 50 HOH HOH . G 6 HOH A 90 690 60 HOH HOH . G 6 HOH A 91 691 110 HOH HOH . G 6 HOH A 92 692 29 HOH HOH . G 6 HOH A 93 693 82 HOH HOH . G 6 HOH A 94 694 21 HOH HOH . G 6 HOH A 95 695 98 HOH HOH . G 6 HOH A 96 696 116 HOH HOH . G 6 HOH A 97 697 74 HOH HOH . G 6 HOH A 98 698 120 HOH HOH . G 6 HOH A 99 699 19 HOH HOH . G 6 HOH A 100 700 133 HOH HOH . G 6 HOH A 101 701 140 HOH HOH . G 6 HOH A 102 702 48 HOH HOH . G 6 HOH A 103 703 62 HOH HOH . G 6 HOH A 104 704 129 HOH HOH . G 6 HOH A 105 705 72 HOH HOH . G 6 HOH A 106 706 13 HOH HOH . G 6 HOH A 107 707 131 HOH HOH . G 6 HOH A 108 708 51 HOH HOH . G 6 HOH A 109 709 6 HOH HOH . G 6 HOH A 110 710 3 HOH HOH . G 6 HOH A 111 711 40 HOH HOH . G 6 HOH A 112 712 174 HOH HOH . G 6 HOH A 113 713 88 HOH HOH . G 6 HOH A 114 714 77 HOH HOH . G 6 HOH A 115 715 41 HOH HOH . G 6 HOH A 116 716 22 HOH HOH . G 6 HOH A 117 717 178 HOH HOH . G 6 HOH A 118 718 156 HOH HOH . G 6 HOH A 119 719 18 HOH HOH . G 6 HOH A 120 720 8 HOH HOH . G 6 HOH A 121 721 84 HOH HOH . G 6 HOH A 122 722 5 HOH HOH . G 6 HOH A 123 723 58 HOH HOH . G 6 HOH A 124 724 142 HOH HOH . G 6 HOH A 125 725 97 HOH HOH . G 6 HOH A 126 726 71 HOH HOH . G 6 HOH A 127 727 154 HOH HOH . G 6 HOH A 128 728 112 HOH HOH . G 6 HOH A 129 729 135 HOH HOH . G 6 HOH A 130 730 137 HOH HOH . G 6 HOH A 131 731 134 HOH HOH . G 6 HOH A 132 732 173 HOH HOH . G 6 HOH A 133 733 141 HOH HOH . G 6 HOH A 134 734 136 HOH HOH . G 6 HOH A 135 735 75 HOH HOH . G 6 HOH A 136 736 37 HOH HOH . G 6 HOH A 137 737 166 HOH HOH . G 6 HOH A 138 738 107 HOH HOH . G 6 HOH A 139 739 161 HOH HOH . G 6 HOH A 140 740 31 HOH HOH . G 6 HOH A 141 741 79 HOH HOH . G 6 HOH A 142 742 99 HOH HOH . G 6 HOH A 143 743 90 HOH HOH . G 6 HOH A 144 744 130 HOH HOH . G 6 HOH A 145 745 118 HOH HOH . G 6 HOH A 146 746 122 HOH HOH . G 6 HOH A 147 747 139 HOH HOH . G 6 HOH A 148 748 111 HOH HOH . G 6 HOH A 149 749 177 HOH HOH . G 6 HOH A 150 750 176 HOH HOH . G 6 HOH A 151 751 125 HOH HOH . G 6 HOH A 152 752 175 HOH HOH . G 6 HOH A 153 753 54 HOH HOH . G 6 HOH A 154 754 100 HOH HOH . G 6 HOH A 155 755 163 HOH HOH . G 6 HOH A 156 756 170 HOH HOH . G 6 HOH A 157 757 124 HOH HOH . G 6 HOH A 158 758 153 HOH HOH . G 6 HOH A 159 759 168 HOH HOH . G 6 HOH A 160 760 86 HOH HOH . G 6 HOH A 161 761 167 HOH HOH . G 6 HOH A 162 762 121 HOH HOH . G 6 HOH A 163 763 162 HOH HOH . G 6 HOH A 164 764 66 HOH HOH . G 6 HOH A 165 765 151 HOH HOH . G 6 HOH A 166 766 83 HOH HOH . G 6 HOH A 167 767 103 HOH HOH . G 6 HOH A 168 768 164 HOH HOH . G 6 HOH A 169 769 89 HOH HOH . G 6 HOH A 170 770 91 HOH HOH . G 6 HOH A 171 771 76 HOH HOH . G 6 HOH A 172 772 169 HOH HOH . G 6 HOH A 173 773 144 HOH HOH . G 6 HOH A 174 774 165 HOH HOH . G 6 HOH A 175 775 172 HOH HOH . G 6 HOH A 176 776 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . D 4 12.576 7.137 2.26 1 31.6 ? N CCN 503 A 1 HETATM 2 C C1 CCN . . . D 4 13.347 7.75 2.919 1 32.38 ? C1 CCN 503 A 1 HETATM 3 C C2 CCN . . . D 4 14.3 8.545 3.743 1 27.32 ? C2 CCN 503 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 3 #