data_5TPW
#
_model_server_result.job_id            -Wt0DChLtya-owKUVwKF8A 
_model_server_result.datetime_utc      '2025-01-09 19:22:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tpw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    5TPW 
#
_exptl.entry_id    5TPW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TPW 
_cell.length_a            79.56 
_cell.length_b            118.401 
_cell.length_c            155.812 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TPW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 56 A CYS 79 1_555 A SG CYS 306 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 54 B CYS 87 1_555 B SG CYS 287 B CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf6 D SG CYS 134 L CYS 134 1_555 D SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 274 A ASN 297 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 366 A ASN 389 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
metalc ? metalc1 B NE2 HIS 11 B HIS 44 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 B NE2 HIS 95 B HIS 128 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc3 B OE2 GLU 233 B GLU 266 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc4 B OD1 ASP 249 B ASP 282 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc5 B OD2 ASP 249 B ASP 282 1_555 L ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5TPW 
_atom_sites.fract_transf_matrix[1][1]    0.012569 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008446 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG A 1 501 1 NAG NAG . 
F 5 NAG A 1 502 2 NAG NAG . 
G 6 SO4 A 1 503 3 SO4 SO4 . 
H 6 SO4 A 1 504 4 SO4 SO4 . 
I 6 SO4 A 1 505 6 SO4 SO4 . 
J 7 GOL A 1 506 1 GOL GOL . 
K 7 GOL A 1 507 2 GOL GOL . 
L 8 ZN B 1 401 1 ZN ZN . 
M 6 SO4 B 1 402 1 SO4 SO4 . 
N 6 SO4 B 1 403 2 SO4 SO4 . 
O 6 SO4 B 1 404 5 SO4 SO4 . 
P 9 HOH A 1 601 40 HOH HOH . 
P 9 HOH A 2 602 64 HOH HOH . 
P 9 HOH A 3 603 59 HOH HOH . 
P 9 HOH A 4 604 11 HOH HOH . 
P 9 HOH A 5 605 62 HOH HOH . 
P 9 HOH A 6 606 26 HOH HOH . 
P 9 HOH A 7 607 60 HOH HOH . 
P 9 HOH A 8 608 6 HOH HOH . 
P 9 HOH A 9 609 3 HOH HOH . 
P 9 HOH A 10 610 38 HOH HOH . 
P 9 HOH A 11 611 27 HOH HOH . 
P 9 HOH A 12 612 41 HOH HOH . 
P 9 HOH A 13 613 63 HOH HOH . 
P 9 HOH A 14 614 4 HOH HOH . 
P 9 HOH A 15 615 39 HOH HOH . 
P 9 HOH A 16 616 37 HOH HOH . 
P 9 HOH A 17 617 34 HOH HOH . 
P 9 HOH A 18 618 9 HOH HOH . 
P 9 HOH A 19 619 61 HOH HOH . 
Q 9 HOH B 1 501 21 HOH HOH . 
Q 9 HOH B 2 502 46 HOH HOH . 
Q 9 HOH B 3 503 16 HOH HOH . 
Q 9 HOH B 4 504 15 HOH HOH . 
Q 9 HOH B 5 505 17 HOH HOH . 
Q 9 HOH B 6 506 18 HOH HOH . 
Q 9 HOH B 7 507 44 HOH HOH . 
R 9 HOH H 1 301 66 HOH HOH . 
R 9 HOH H 2 302 52 HOH HOH . 
R 9 HOH H 3 303 51 HOH HOH . 
R 9 HOH H 4 304 24 HOH HOH . 
R 9 HOH H 5 305 47 HOH HOH . 
S 9 HOH L 1 301 56 HOH HOH . 
S 9 HOH L 2 302 58 HOH HOH . 
S 9 HOH L 3 303 57 HOH HOH . 
S 9 HOH L 4 304 53 HOH HOH . 
S 9 HOH L 5 305 54 HOH HOH . 
S 9 HOH L 6 306 68 HOH HOH . 
S 9 HOH L 7 307 33 HOH HOH . 
S 9 HOH L 8 308 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 5 -32.576 59.3 -14.813 1 75.15 ? C1 NAG 502 A 1 
HETATM 2 C C2 NAG . . . F 5 -31.936 58.49 -13.7 1 86.28 ? C2 NAG 502 A 1 
HETATM 3 C C3 NAG . . . F 5 -32.909 57.406 -13.247 1 92.94 ? C3 NAG 502 A 1 
HETATM 4 C C4 NAG . . . F 5 -34.278 58.002 -12.923 1 101.35 ? C4 NAG 502 A 1 
HETATM 5 C C5 NAG . . . F 5 -34.76 58.967 -14.011 1 88.16 ? C5 NAG 502 A 1 
HETATM 6 C C6 NAG . . . F 5 -35.98 59.76 -13.602 1 83.23 ? C6 NAG 502 A 1 
HETATM 7 C C7 NAG . . . F 5 -29.673 57.616 -13.3 1 70.59 ? C7 NAG 502 A 1 
HETATM 8 C C8 NAG . . . F 5 -28.452 57.014 -13.927 1 76.86 ? C8 NAG 502 A 1 
HETATM 9 N N2 NAG . . . F 5 -30.679 57.9 -14.134 1 73.74 ? N2 NAG 502 A 1 
HETATM 10 O O3 NAG . . . F 5 -32.386 56.735 -12.106 1 89.28 ? O3 NAG 502 A 1 
HETATM 11 O O4 NAG . . . F 5 -35.231 56.951 -12.809 1 92.22 ? O4 NAG 502 A 1 
HETATM 12 O O5 NAG . . . F 5 -33.74 59.925 -14.328 1 76.18 ? O5 NAG 502 A 1 
HETATM 13 O O6 NAG . . . F 5 -35.708 61.155 -13.601 1 103.34 ? O6 NAG 502 A 1 
HETATM 14 O O7 NAG . . . F 5 -29.747 57.832 -12.095 1 87.27 ? O7 NAG 502 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           44 
_model_server_stats.create_model_time_ms    72 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           14 
#