data_5TQ0 # _model_server_result.job_id hU-x8ApmNqeoynoG7LifYQ _model_server_result.datetime_utc '2024-11-05 00:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tq0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":504}' # _entry.id 5TQ0 # _exptl.entry_id 5TQ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TQ0 _cell.length_a 79.98 _cell.length_b 118.346 _cell.length_c 156.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TQ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 79 1_555 A SG CYS 306 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 B SG CYS 54 B CYS 87 1_555 B SG CYS 287 B CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 146 H CYS 146 1_555 C SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 D SG CYS 23 L CYS 23 1_555 D SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 D SG CYS 134 L CYS 134 1_555 D SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 274 A ASN 297 1_555 E C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 366 A ASN 389 1_555 F C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 D NH1 ARG 155 L ARG 155 1_555 U O4 SO4 . L SO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5TQ0 _atom_sites.fract_transf_matrix[1][1] 0.012503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 501 415 NAG NAG . F 5 NAG A 1 502 416 NAG NAG . G 6 GOL A 1 503 1 GOL GOL . H 6 GOL A 1 504 3 GOL GOL . I 7 SO4 A 1 505 4 SO4 SO4 . J 7 SO4 A 1 506 5 SO4 SO4 . K 7 SO4 A 1 507 9 SO4 SO4 . L 7 SO4 A 1 508 12 SO4 SO4 . M 7 SO4 A 1 509 13 SO4 SO4 . N 7 SO4 B 1 401 2 SO4 SO4 . O 7 SO4 B 1 402 3 SO4 SO4 . P 7 SO4 B 1 403 6 SO4 SO4 . Q 7 SO4 B 1 404 8 SO4 SO4 . R 7 SO4 B 1 405 10 SO4 SO4 . S 8 IPA H 1 301 1 IPA IPA . T 7 SO4 L 1 301 7 SO4 SO4 . U 7 SO4 L 1 302 11 SO4 SO4 . V 9 HOH A 1 601 152 HOH HOH . V 9 HOH A 2 602 143 HOH HOH . V 9 HOH A 3 603 155 HOH HOH . V 9 HOH A 4 604 182 HOH HOH . V 9 HOH A 5 605 189 HOH HOH . V 9 HOH A 6 606 150 HOH HOH . V 9 HOH A 7 607 190 HOH HOH . V 9 HOH A 8 608 141 HOH HOH . V 9 HOH A 9 609 5 HOH HOH . V 9 HOH A 10 610 187 HOH HOH . V 9 HOH A 11 611 197 HOH HOH . V 9 HOH A 12 612 191 HOH HOH . V 9 HOH A 13 613 146 HOH HOH . V 9 HOH A 14 614 185 HOH HOH . V 9 HOH A 15 615 151 HOH HOH . V 9 HOH A 16 616 169 HOH HOH . V 9 HOH A 17 617 164 HOH HOH . V 9 HOH A 18 618 78 HOH HOH . V 9 HOH A 19 619 145 HOH HOH . V 9 HOH A 20 620 92 HOH HOH . V 9 HOH A 21 621 157 HOH HOH . V 9 HOH A 22 622 66 HOH HOH . V 9 HOH A 23 623 186 HOH HOH . V 9 HOH A 24 624 165 HOH HOH . V 9 HOH A 25 625 183 HOH HOH . V 9 HOH A 26 626 102 HOH HOH . V 9 HOH A 27 627 166 HOH HOH . W 9 HOH B 1 501 173 HOH HOH . W 9 HOH B 2 502 167 HOH HOH . W 9 HOH B 3 503 138 HOH HOH . W 9 HOH B 4 504 184 HOH HOH . W 9 HOH B 5 505 137 HOH HOH . W 9 HOH B 6 506 174 HOH HOH . W 9 HOH B 7 507 161 HOH HOH . W 9 HOH B 8 508 30 HOH HOH . W 9 HOH B 9 509 139 HOH HOH . W 9 HOH B 10 510 194 HOH HOH . W 9 HOH B 11 511 172 HOH HOH . W 9 HOH B 12 512 193 HOH HOH . X 9 HOH H 1 401 175 HOH HOH . X 9 HOH H 2 402 195 HOH HOH . X 9 HOH H 3 403 178 HOH HOH . X 9 HOH H 4 404 125 HOH HOH . X 9 HOH H 5 405 103 HOH HOH . X 9 HOH H 6 406 67 HOH HOH . X 9 HOH H 7 407 176 HOH HOH . X 9 HOH H 8 408 168 HOH HOH . Y 9 HOH L 1 401 62 HOH HOH . Y 9 HOH L 2 402 180 HOH HOH . Y 9 HOH L 3 403 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 6 -28.244 5.749 -50.009 1 75.39 ? C1 GOL 504 A 1 HETATM 2 O O1 GOL . . . H 6 -26.983 6.136 -50.514 1 74.86 ? O1 GOL 504 A 1 HETATM 3 C C2 GOL . . . H 6 -29.22 6.92 -50.074 1 66.62 ? C2 GOL 504 A 1 HETATM 4 O O2 GOL . . . H 6 -30.501 6.451 -50.431 1 73.13 ? O2 GOL 504 A 1 HETATM 5 C C3 GOL . . . H 6 -29.304 7.59 -48.709 1 69.23 ? C3 GOL 504 A 1 HETATM 6 O O3 GOL . . . H 6 -30.358 8.527 -48.712 1 74.49 ? O3 GOL 504 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #