data_5TQ3 # _model_server_result.job_id rZI-6K0j3Dmv3b5iaa974w _model_server_result.datetime_utc '2024-12-02 17:17:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4000}' # _entry.id 5TQ3 # _exptl.entry_id 5TQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[3-(1H-benzimidazol-2-yl)-1H-indazol-6-yl]-3-ethylphenol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.41 _cell.angle_gamma 90 _cell.entry_id 5TQ3 _cell.length_a 36.854 _cell.length_b 182.726 _cell.length_c 52.766 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 178 A GLU 1006 1_555 A N PTR 179 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C PTR 179 A PTR 1007 1_555 A N PTR 180 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C PTR 180 A PTR 1008 1_555 A N LYS 181 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C GLU 178 B GLU 1006 1_555 B N PTR 179 B PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 B C PTR 179 B PTR 1007 1_555 B N PTR 180 B PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 B C PTR 180 B PTR 1008 1_555 B N LYS 181 B LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? # _chem_comp.formula 'C22 H18 N4 O' _chem_comp.formula_weight 354.405 _chem_comp.id 7GZ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[3-(1H-benzimidazol-2-yl)-1H-indazol-6-yl]-3-ethylphenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C23 7GZ doub 1 n y C24 C25 7GZ sing 2 n y C23 C22 7GZ sing 3 n y N26 C25 7GZ sing 4 n y N26 C18 7GZ doub 5 n y C25 C20 7GZ doub 6 n y N16 N15 7GZ sing 7 n y N16 C17 7GZ doub 8 n y C22 C21 7GZ doub 9 n y C18 C17 7GZ sing 10 n n C18 N19 7GZ sing 11 n y N15 C13 7GZ sing 12 n y C20 C21 7GZ sing 13 n y C20 N19 7GZ sing 14 n y C17 C12 7GZ sing 15 n y C13 C12 7GZ doub 16 n y C13 C14 7GZ sing 17 n y C12 C11 7GZ sing 18 n y C1 C2 7GZ sing 19 n n C14 C9 7GZ doub 20 n y C11 C10 7GZ doub 21 n y C2 C3 7GZ sing 22 n n C9 C10 7GZ sing 23 n y C9 C8 7GZ sing 24 n n C3 C8 7GZ doub 25 n y C3 C4 7GZ sing 26 n y C8 C7 7GZ sing 27 n y C4 C5 7GZ doub 28 n y C7 C6 7GZ doub 29 n y C5 C6 7GZ sing 30 n y C5 O27 7GZ sing 31 n n C4 H1 7GZ sing 32 n n C7 H2 7GZ sing 33 n n C6 H3 7GZ sing 34 n n C21 H4 7GZ sing 35 n n C1 H5 7GZ sing 36 n n C1 H6 7GZ sing 37 n n C1 H7 7GZ sing 38 n n C2 H8 7GZ sing 39 n n C2 H9 7GZ sing 40 n n C10 H10 7GZ sing 41 n n C11 H11 7GZ sing 42 n n C14 H12 7GZ sing 43 n n N15 H13 7GZ sing 44 n n N19 H14 7GZ sing 45 n n C22 H15 7GZ sing 46 n n C23 H16 7GZ sing 47 n n C24 H17 7GZ sing 48 n n O27 H19 7GZ sing 49 n n # _atom_sites.entry_id 5TQ3 _atom_sites.fract_transf_matrix[1][1] 0.027134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010097 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7GZ A 1 4000 4000 7GZ PFE . D 2 7GZ B 1 4001 4001 7GZ PFE . E 3 HOH A 1 4101 65 HOH HOH . E 3 HOH A 2 4102 19 HOH HOH . E 3 HOH A 3 4103 17 HOH HOH . E 3 HOH A 4 4104 52 HOH HOH . E 3 HOH A 5 4105 91 HOH HOH . E 3 HOH A 6 4106 63 HOH HOH . E 3 HOH A 7 4107 99 HOH HOH . E 3 HOH A 8 4108 148 HOH HOH . E 3 HOH A 9 4109 184 HOH HOH . E 3 HOH A 10 4110 38 HOH HOH . E 3 HOH A 11 4111 34 HOH HOH . E 3 HOH A 12 4112 3 HOH HOH . E 3 HOH A 13 4113 77 HOH HOH . E 3 HOH A 14 4114 79 HOH HOH . E 3 HOH A 15 4115 172 HOH HOH . E 3 HOH A 16 4116 33 HOH HOH . E 3 HOH A 17 4117 86 HOH HOH . E 3 HOH A 18 4118 8 HOH HOH . E 3 HOH A 19 4119 134 HOH HOH . E 3 HOH A 20 4120 39 HOH HOH . E 3 HOH A 21 4121 1 HOH HOH . E 3 HOH A 22 4122 139 HOH HOH . E 3 HOH A 23 4123 157 HOH HOH . E 3 HOH A 24 4124 14 HOH HOH . E 3 HOH A 25 4125 44 HOH HOH . E 3 HOH A 26 4126 179 HOH HOH . F 3 HOH B 1 4101 30 HOH HOH . F 3 HOH B 2 4102 51 HOH HOH . F 3 HOH B 3 4103 54 HOH HOH . F 3 HOH B 4 4104 61 HOH HOH . F 3 HOH B 5 4105 153 HOH HOH . F 3 HOH B 6 4106 29 HOH HOH . F 3 HOH B 7 4107 59 HOH HOH . F 3 HOH B 8 4108 71 HOH HOH . F 3 HOH B 9 4109 4 HOH HOH . F 3 HOH B 10 4110 7 HOH HOH . F 3 HOH B 11 4111 49 HOH HOH . F 3 HOH B 12 4112 43 HOH HOH . F 3 HOH B 13 4113 177 HOH HOH . F 3 HOH B 14 4114 70 HOH HOH . F 3 HOH B 15 4115 141 HOH HOH . F 3 HOH B 16 4116 164 HOH HOH . F 3 HOH B 17 4117 82 HOH HOH . F 3 HOH B 18 4118 15 HOH HOH . F 3 HOH B 19 4119 18 HOH HOH . F 3 HOH B 20 4120 132 HOH HOH . F 3 HOH B 21 4121 135 HOH HOH . F 3 HOH B 22 4122 103 HOH HOH . F 3 HOH B 23 4123 12 HOH HOH . F 3 HOH B 24 4124 56 HOH HOH . F 3 HOH B 25 4125 35 HOH HOH . F 3 HOH B 26 4126 195 HOH HOH . F 3 HOH B 27 4127 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7GZ . . . C 2 6.106 -6.805 13.841 1 28.47 ? C4 7GZ 4000 A 1 HETATM 2 C C7 7GZ . . . C 2 4.284 -4.726 13.891 1 27.28 ? C7 7GZ 4000 A 1 HETATM 3 C C6 7GZ . . . C 2 4.165 -5.767 14.795 1 27.74 ? C6 7GZ 4000 A 1 HETATM 4 C C9 7GZ . . . C 2 5.4 -3.542 12.02 1 23.04 ? C9 7GZ 4000 A 1 HETATM 5 C C13 7GZ . . . C 2 4.607 -2.331 10.095 1 21.88 ? C13 7GZ 4000 A 1 HETATM 6 C C20 7GZ . . . C 2 7.476 2.583 9.062 1 22.84 ? C20 7GZ 4000 A 1 HETATM 7 C C21 7GZ . . . C 2 8.471 3.505 9.357 1 22.94 ? C21 7GZ 4000 A 1 HETATM 8 C C8 7GZ . . . C 2 5.315 -4.704 12.95 1 26.07 ? C8 7GZ 4000 A 1 HETATM 9 C C18 7GZ . . . C 2 6.053 0.906 8.932 1 21.44 ? C18 7GZ 4000 A 1 HETATM 10 C C1 7GZ . . . C 2 6.949 -6.241 10.534 1 24.92 ? C1 7GZ 4000 A 1 HETATM 11 C C2 7GZ . . . C 2 7.367 -5.812 11.921 1 25.98 ? C2 7GZ 4000 A 1 HETATM 12 C C3 7GZ . . . C 2 6.236 -5.763 12.925 1 27.02 ? C3 7GZ 4000 A 1 HETATM 13 C C5 7GZ . . . C 2 5.08 -6.807 14.772 1 29.88 ? C5 7GZ 4000 A 1 HETATM 14 C C10 7GZ . . . C 2 6.349 -2.535 12.219 1 22.62 ? C10 7GZ 4000 A 1 HETATM 15 C C11 7GZ . . . C 2 6.434 -1.439 11.375 1 22.42 ? C11 7GZ 4000 A 1 HETATM 16 C C12 7GZ . . . C 2 5.563 -1.319 10.296 1 21.94 ? C12 7GZ 4000 A 1 HETATM 17 C C14 7GZ . . . C 2 4.52 -3.432 10.941 1 22.21 ? C14 7GZ 4000 A 1 HETATM 18 N N15 7GZ . . . C 2 3.896 -1.973 8.997 1 23.02 ? N15 7GZ 4000 A 1 HETATM 19 N N16 7GZ . . . C 2 4.33 -0.792 8.474 1 23.44 ? N16 7GZ 4000 A 1 HETATM 20 C C17 7GZ . . . C 2 5.349 -0.342 9.225 1 22.05 ? C17 7GZ 4000 A 1 HETATM 21 N N19 7GZ . . . C 2 7.106 1.386 9.649 1 20.67 ? N19 7GZ 4000 A 1 HETATM 22 C C22 7GZ . . . C 2 8.58 4.631 8.554 1 23.34 ? C22 7GZ 4000 A 1 HETATM 23 C C23 7GZ . . . C 2 7.712 4.827 7.482 1 23.04 ? C23 7GZ 4000 A 1 HETATM 24 C C24 7GZ . . . C 2 6.719 3.901 7.193 1 22.81 ? C24 7GZ 4000 A 1 HETATM 25 C C25 7GZ . . . C 2 6.601 2.765 7.993 1 23.82 ? C25 7GZ 4000 A 1 HETATM 26 N N26 7GZ . . . C 2 5.709 1.694 7.926 1 23.88 ? N26 7GZ 4000 A 1 HETATM 27 O O27 7GZ . . . C 2 4.976 -7.833 15.666 1 29.99 ? O27 7GZ 4000 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 766 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 27 #