data_5TQB
#
_model_server_result.job_id            NBxqLG2hSuYuFDU8ZkllZw 
_model_server_result.datetime_utc      '2025-04-08 10:53:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5TQB 
#
_exptl.entry_id    5TQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TQB 
_cell.length_a            121 
_cell.length_b            127.9 
_cell.length_c            42.7 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 42 A GLY 42 1_555 A N MSE 43 A MSE 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MSE 43 A MSE 43 1_555 A N ALA 44 A ALA 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C ASN 93 A ASN 93 1_555 A N MSE 94 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C MSE 94 A MSE 94 1_555 A N CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 A C ARG 99 A ARG 99 1_555 A N MSE 100 A MSE 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale6 A C MSE 100 A MSE 100 1_555 A N PHE 101 A PHE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C LEU 136 A LEU 136 1_555 A N MSE 137 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 A C MSE 137 A MSE 137 1_555 A N ALA 138 A ALA 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 B C LEU 120 B LEU 146 1_555 B N MSE 121 B MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale10 B C MSE 121 B MSE 147 1_555 B N ASP 122 B ASP 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale11 B C TYR 156 B TYR 182 1_555 B N MSE 157 B MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 B C MSE 157 B MSE 183 1_555 B N THR 158 B THR 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale13 B C THR 178 B THR 204 1_555 B N MSE 179 B MSE 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale14 B C MSE 179 B MSE 205 1_555 B N ILE 180 B ILE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale15 B C ASP 242 B ASP 268 1_555 B N MSE 243 B MSE 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 B C MSE 243 B MSE 269 1_555 B N GLU 244 B GLU 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5TQB 
_atom_sites.fract_transf_matrix[1][1]    0.008264 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007819 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 301 3 EDO EDO . 
D 3 EDO A 1 302 4 EDO EDO . 
E 4 PEG B 1 401 2 PEG PEG . 
F 3 EDO B 1 402 1 EDO EDO . 
G 3 EDO B 1 403 2 EDO EDO . 
H 3 EDO B 1 404 5 EDO EDO . 
I 3 EDO B 1 405 6 EDO EDO . 
J 3 EDO B 1 406 7 EDO EDO . 
K 3 EDO B 1 407 8 EDO EDO . 
L 5 HOH A 1 401 55 HOH HOH . 
L 5 HOH A 2 402 19 HOH HOH . 
L 5 HOH A 3 403 6 HOH HOH . 
L 5 HOH A 4 404 7 HOH HOH . 
L 5 HOH A 5 405 38 HOH HOH . 
L 5 HOH A 6 406 21 HOH HOH . 
L 5 HOH A 7 407 58 HOH HOH . 
L 5 HOH A 8 408 14 HOH HOH . 
L 5 HOH A 9 409 53 HOH HOH . 
L 5 HOH A 10 410 47 HOH HOH . 
L 5 HOH A 11 411 22 HOH HOH . 
L 5 HOH A 12 412 20 HOH HOH . 
L 5 HOH A 13 413 18 HOH HOH . 
L 5 HOH A 14 414 23 HOH HOH . 
L 5 HOH A 15 415 27 HOH HOH . 
L 5 HOH A 16 416 24 HOH HOH . 
L 5 HOH A 17 417 15 HOH HOH . 
L 5 HOH A 18 418 17 HOH HOH . 
L 5 HOH A 19 419 28 HOH HOH . 
L 5 HOH A 20 420 49 HOH HOH . 
M 5 HOH B 1 501 59 HOH HOH . 
M 5 HOH B 2 502 3 HOH HOH . 
M 5 HOH B 3 503 25 HOH HOH . 
M 5 HOH B 4 504 48 HOH HOH . 
M 5 HOH B 5 505 56 HOH HOH . 
M 5 HOH B 6 506 4 HOH HOH . 
M 5 HOH B 7 507 50 HOH HOH . 
M 5 HOH B 8 508 60 HOH HOH . 
M 5 HOH B 9 509 33 HOH HOH . 
M 5 HOH B 10 510 51 HOH HOH . 
M 5 HOH B 11 511 16 HOH HOH . 
M 5 HOH B 12 512 11 HOH HOH . 
M 5 HOH B 13 513 37 HOH HOH . 
M 5 HOH B 14 514 40 HOH HOH . 
M 5 HOH B 15 515 57 HOH HOH . 
M 5 HOH B 16 516 44 HOH HOH . 
M 5 HOH B 17 517 36 HOH HOH . 
M 5 HOH B 18 518 34 HOH HOH . 
M 5 HOH B 19 519 45 HOH HOH . 
M 5 HOH B 20 520 8 HOH HOH . 
M 5 HOH B 21 521 54 HOH HOH . 
M 5 HOH B 22 522 5 HOH HOH . 
M 5 HOH B 23 523 35 HOH HOH . 
M 5 HOH B 24 524 9 HOH HOH . 
M 5 HOH B 25 525 46 HOH HOH . 
M 5 HOH B 26 526 32 HOH HOH . 
M 5 HOH B 27 527 26 HOH HOH . 
M 5 HOH B 28 528 1 HOH HOH . 
M 5 HOH B 29 529 31 HOH HOH . 
M 5 HOH B 30 530 52 HOH HOH . 
M 5 HOH B 31 531 30 HOH HOH . 
M 5 HOH B 32 532 12 HOH HOH . 
M 5 HOH B 33 533 42 HOH HOH . 
M 5 HOH B 34 534 39 HOH HOH . 
M 5 HOH B 35 535 41 HOH HOH . 
M 5 HOH B 36 536 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 35.807 -5.145 10.294 1 74.78 ? C1 EDO 301 A 1 
HETATM 2 O O1 EDO . . . C 3 34.788 -6.117 10.441 1 72.09 ? O1 EDO 301 A 1 
HETATM 3 C C2 EDO . . . C 3 36.287 -4.678 11.649 1 74.64 ? C2 EDO 301 A 1 
HETATM 4 O O2 EDO . . . C 3 37.031 -5.714 12.254 1 73.23 ? O2 EDO 301 A 1 
HETATM 5 H H11 EDO . . . C 3 35.455 -4.383 9.797 1 89.73 ? H11 EDO 301 A 1 
HETATM 6 H H12 EDO . . . C 3 36.556 -5.533 9.802 1 89.73 ? H12 EDO 301 A 1 
HETATM 7 H HO1 EDO . . . C 3 34.5 -6.368 9.639 1 86.51 ? HO1 EDO 301 A 1 
HETATM 8 H H21 EDO . . . C 3 36.853 -3.89 11.541 1 89.57 ? H21 EDO 301 A 1 
HETATM 9 H H22 EDO . . . C 3 35.52 -4.455 12.209 1 89.57 ? H22 EDO 301 A 1 
HETATM 10 H HO2 EDO . . . C 3 36.764 -5.818 13.095 1 87.88 ? HO2 EDO 301 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           10 
#