data_5TR1 # _model_server_result.job_id Uu_jiJv0ZB0CwKM8EsgaNA _model_server_result.datetime_utc '2024-10-28 02:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 5TR1 # _exptl.entry_id 5TR1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TR1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 E SG CYS 22 I CYS 22 1_555 E SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 F SG CYS 23 M CYS 23 1_555 F SG CYS 88 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 374 n n CBA CAB Y01 sing 375 n n CBA CAN Y01 sing 376 n n CAN CAJ Y01 sing 377 n n CAJ CAO Y01 sing 378 n n CAO CBB Y01 sing 379 n n CBB CAC Y01 sing 380 n n CBB CBE Y01 sing 381 n n CBE CAP Y01 sing 382 n n CBE CBI Y01 sing 383 n n CAP CAQ Y01 sing 384 n n CAQ CBG Y01 sing 385 n n CBG CBI Y01 sing 386 n n CBG CBD Y01 sing 387 n n CBI CAE Y01 sing 388 n n CBI CAU Y01 sing 389 n n CAU CAS Y01 sing 390 n n CAS CBF Y01 sing 391 n n CBF CBD Y01 sing 392 n n CBF CBH Y01 sing 393 n n CBD CAK Y01 sing 394 n n CAK CAI Y01 sing 395 n n CAI CAZ Y01 doub 396 n n CAZ CAV Y01 sing 397 n n CAZ CBH Y01 sing 398 n n CAV CBC Y01 sing 399 n n CBH CAD Y01 sing 400 n n CBH CAT Y01 sing 401 n n CAT CAR Y01 sing 402 n n CAR CBC Y01 sing 403 n n CBC OAW Y01 sing 404 n n OAW CAY Y01 sing 405 n n CAY OAG Y01 doub 406 n n CAY CAM Y01 sing 407 n n CAM CAL Y01 sing 408 n n CAL CAX Y01 sing 409 n n CAX OAH Y01 sing 410 n n CAX OAF Y01 doub 411 n n CAA HAA1 Y01 sing 412 n n CAA HAA2 Y01 sing 413 n n CAA HAA3 Y01 sing 414 n n CBA HBA Y01 sing 415 n n CAB HAB1 Y01 sing 416 n n CAB HAB2 Y01 sing 417 n n CAB HAB3 Y01 sing 418 n n CAN HAN1 Y01 sing 419 n n CAN HAN2 Y01 sing 420 n n CAJ HAJ1 Y01 sing 421 n n CAJ HAJ2 Y01 sing 422 n n CAO HAO1 Y01 sing 423 n n CAO HAO2 Y01 sing 424 n n CBB HBB Y01 sing 425 n n CAC HAC1 Y01 sing 426 n n CAC HAC2 Y01 sing 427 n n CAC HAC3 Y01 sing 428 n n CBE HBE Y01 sing 429 n n CAP HAP1 Y01 sing 430 n n CAP HAP2 Y01 sing 431 n n CAQ HAQ1 Y01 sing 432 n n CAQ HAQ2 Y01 sing 433 n n CBG HBG Y01 sing 434 n n CBD HBD Y01 sing 435 n n CAE HAE1 Y01 sing 436 n n CAE HAE2 Y01 sing 437 n n CAE HAE3 Y01 sing 438 n n CAU HAU1 Y01 sing 439 n n CAU HAU2 Y01 sing 440 n n CAS HAS1 Y01 sing 441 n n CAS HAS2 Y01 sing 442 n n CBF HBF Y01 sing 443 n n CAK HAK1 Y01 sing 444 n n CAK HAK2 Y01 sing 445 n n CAI HAI Y01 sing 446 n n CAV HAV1 Y01 sing 447 n n CAV HAV2 Y01 sing 448 n n CBC HBC Y01 sing 449 n n CAD HAD1 Y01 sing 450 n n CAD HAD2 Y01 sing 451 n n CAD HAD3 Y01 sing 452 n n CAT HAT1 Y01 sing 453 n n CAT HAT2 Y01 sing 454 n n CAR HAR1 Y01 sing 455 n n CAR HAR2 Y01 sing 456 n n CAM HAM1 Y01 sing 457 n n CAM HAM2 Y01 sing 458 n n CAL HAL1 Y01 sing 459 n n CAL HAL2 Y01 sing 460 n n OAH HAH Y01 sing 461 n n # _atom_sites.entry_id 5TR1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 Y01 A 1 701 701 Y01 Y01 . H 4 Y01 B 1 701 701 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 4 152.656 176.037 134.324 1 304.89 ? CAA Y01 701 A 1 HETATM 2 C CBA Y01 . . . G 4 152.452 174.585 133.901 1 304.86 ? CBA Y01 701 A 1 HETATM 3 C CAB Y01 . . . G 4 151.663 173.892 135.01 1 303.58 ? CAB Y01 701 A 1 HETATM 4 C CAN Y01 . . . G 4 153.754 173.84 133.531 1 305 ? CAN Y01 701 A 1 HETATM 5 C CAJ Y01 . . . G 4 153.716 173.08 132.196 1 297.8 ? CAJ Y01 701 A 1 HETATM 6 C CAO Y01 . . . G 4 155.082 172.674 131.632 1 297.37 ? CAO Y01 701 A 1 HETATM 7 C CBB Y01 . . . G 4 155.194 172.752 130.091 1 313.71 ? CBB Y01 701 A 1 HETATM 8 C CAC Y01 . . . G 4 156.674 172.924 129.736 1 318.68 ? CAC Y01 701 A 1 HETATM 9 C CBE Y01 . . . G 4 154.502 171.554 129.378 1 325.72 ? CBE Y01 701 A 1 HETATM 10 C CAP Y01 . . . G 4 152.966 171.688 129.348 1 326.26 ? CAP Y01 701 A 1 HETATM 11 C CAQ Y01 . . . G 4 152.448 170.887 128.153 1 317.25 ? CAQ Y01 701 A 1 HETATM 12 C CBG Y01 . . . G 4 153.698 170.184 127.647 1 316.89 ? CBG Y01 701 A 1 HETATM 13 C CBI Y01 . . . G 4 154.82 171.19 127.911 1 328.56 ? CBI Y01 701 A 1 HETATM 14 C CAE Y01 . . . G 4 154.733 172.443 127.012 1 337.5 ? CAE Y01 701 A 1 HETATM 15 C CAU Y01 . . . G 4 156.123 170.44 127.637 1 327.25 ? CAU Y01 701 A 1 HETATM 16 C CAS Y01 . . . G 4 156.151 169.805 126.239 1 326.05 ? CAS Y01 701 A 1 HETATM 17 C CBF Y01 . . . G 4 154.984 168.828 126.005 1 325.65 ? CBF Y01 701 A 1 HETATM 18 C CBD Y01 . . . G 4 153.658 169.563 126.242 1 319.29 ? CBD Y01 701 A 1 HETATM 19 C CAK Y01 . . . G 4 152.447 168.645 126.104 1 323.79 ? CAK Y01 701 A 1 HETATM 20 C CAI Y01 . . . G 4 152.645 167.485 125.147 1 327.97 ? CAI Y01 701 A 1 HETATM 21 C CAZ Y01 . . . G 4 153.798 167.195 124.516 1 328.49 ? CAZ Y01 701 A 1 HETATM 22 C CAV Y01 . . . G 4 153.815 165.966 123.624 1 318.83 ? CAV Y01 701 A 1 HETATM 23 C CBH Y01 . . . G 4 155.046 168.057 124.663 1 333.28 ? CBH Y01 701 A 1 HETATM 24 C CAD Y01 . . . G 4 155.064 168.984 123.444 1 335.2 ? CAD Y01 701 A 1 HETATM 25 C CAT Y01 . . . G 4 156.312 167.183 124.62 1 334.48 ? CAT Y01 701 A 1 HETATM 26 C CAR Y01 . . . G 4 156.264 165.996 123.657 1 324.14 ? CAR Y01 701 A 1 HETATM 27 C CBC Y01 . . . G 4 155.046 165.129 123.933 1 319.95 ? CBC Y01 701 A 1 HETATM 28 O OAW Y01 . . . G 4 155.074 163.958 123.121 1 328.58 ? OAW Y01 701 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #