data_5TR7 # _model_server_result.job_id MnmOOIz323hsk8ceHchq5w _model_server_result.datetime_utc '2024-12-29 00:07:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tr7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5TR7 # _exptl.entry_id 5TR7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TR7 _cell.length_a 88.749 _cell.length_b 88.749 _cell.length_c 85.425 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TR7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,L 1 1 B,G,H,I,M 2 1 C,J,K,N 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 H N N ? 2 J N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 252 n n C1 C2 PEG sing 253 n n C1 H11 PEG sing 254 n n C1 H12 PEG sing 255 n n O1 HO1 PEG sing 256 n n C2 O2 PEG sing 257 n n C2 H21 PEG sing 258 n n C2 H22 PEG sing 259 n n O2 C3 PEG sing 260 n n C3 C4 PEG sing 261 n n C3 H31 PEG sing 262 n n C3 H32 PEG sing 263 n n C4 O4 PEG sing 264 n n C4 H41 PEG sing 265 n n C4 H42 PEG sing 266 n n O4 HO4 PEG sing 267 n n # _atom_sites.entry_id 5TR7 _atom_sites.fract_transf_matrix[1][1] 0.011268 _atom_sites.fract_transf_matrix[1][2] 0.006505 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PEG A 1 401 4 PEG PEG . E 3 NO2 A 1 402 3 NO2 NO2 . F 3 NO2 A 1 403 4 NO2 NO2 . G 2 PEG B 1 401 1 PEG PEG . H 2 PEG B 1 402 3 PEG PEG . I 4 GOL B 1 403 1 GOL GOL . J 2 PEG C 1 401 2 PEG PEG . K 3 NO2 C 1 402 2 NO2 NO2 . L 5 HOH A 1 501 63 HOH HOH . L 5 HOH A 2 502 49 HOH HOH . L 5 HOH A 3 503 6 HOH HOH . L 5 HOH A 4 504 5 HOH HOH . L 5 HOH A 5 505 59 HOH HOH . L 5 HOH A 6 506 60 HOH HOH . L 5 HOH A 7 507 67 HOH HOH . L 5 HOH A 8 508 19 HOH HOH . L 5 HOH A 9 509 61 HOH HOH . L 5 HOH A 10 510 45 HOH HOH . L 5 HOH A 11 511 24 HOH HOH . L 5 HOH A 12 512 33 HOH HOH . L 5 HOH A 13 513 30 HOH HOH . L 5 HOH A 14 514 22 HOH HOH . L 5 HOH A 15 515 69 HOH HOH . L 5 HOH A 16 516 18 HOH HOH . L 5 HOH A 17 517 39 HOH HOH . L 5 HOH A 18 518 31 HOH HOH . L 5 HOH A 19 519 32 HOH HOH . L 5 HOH A 20 520 46 HOH HOH . L 5 HOH A 21 521 68 HOH HOH . L 5 HOH A 22 522 43 HOH HOH . L 5 HOH A 23 523 28 HOH HOH . L 5 HOH A 24 524 44 HOH HOH . L 5 HOH A 25 525 70 HOH HOH . L 5 HOH A 26 526 50 HOH HOH . M 5 HOH B 1 501 55 HOH HOH . M 5 HOH B 2 502 80 HOH HOH . M 5 HOH B 3 503 38 HOH HOH . M 5 HOH B 4 504 4 HOH HOH . M 5 HOH B 5 505 54 HOH HOH . M 5 HOH B 6 506 3 HOH HOH . M 5 HOH B 7 507 12 HOH HOH . M 5 HOH B 8 508 9 HOH HOH . M 5 HOH B 9 509 52 HOH HOH . M 5 HOH B 10 510 35 HOH HOH . M 5 HOH B 11 511 25 HOH HOH . M 5 HOH B 12 512 74 HOH HOH . M 5 HOH B 13 513 29 HOH HOH . M 5 HOH B 14 514 8 HOH HOH . M 5 HOH B 15 515 13 HOH HOH . M 5 HOH B 16 516 15 HOH HOH . M 5 HOH B 17 517 81 HOH HOH . M 5 HOH B 18 518 72 HOH HOH . M 5 HOH B 19 519 75 HOH HOH . M 5 HOH B 20 520 66 HOH HOH . M 5 HOH B 21 521 21 HOH HOH . M 5 HOH B 22 522 20 HOH HOH . M 5 HOH B 23 523 71 HOH HOH . M 5 HOH B 24 524 16 HOH HOH . M 5 HOH B 25 525 40 HOH HOH . M 5 HOH B 26 526 34 HOH HOH . M 5 HOH B 27 527 79 HOH HOH . M 5 HOH B 28 528 1 HOH HOH . M 5 HOH B 29 529 62 HOH HOH . M 5 HOH B 30 530 2 HOH HOH . M 5 HOH B 31 531 14 HOH HOH . M 5 HOH B 32 532 73 HOH HOH . M 5 HOH B 33 533 27 HOH HOH . M 5 HOH B 34 534 51 HOH HOH . M 5 HOH B 35 535 53 HOH HOH . M 5 HOH B 36 536 48 HOH HOH . M 5 HOH B 37 537 47 HOH HOH . M 5 HOH B 38 538 64 HOH HOH . N 5 HOH C 1 501 77 HOH HOH . N 5 HOH C 2 502 37 HOH HOH . N 5 HOH C 3 503 41 HOH HOH . N 5 HOH C 4 504 78 HOH HOH . N 5 HOH C 5 505 58 HOH HOH . N 5 HOH C 6 506 76 HOH HOH . N 5 HOH C 7 507 10 HOH HOH . N 5 HOH C 8 508 56 HOH HOH . N 5 HOH C 9 509 36 HOH HOH . N 5 HOH C 10 510 7 HOH HOH . N 5 HOH C 11 511 26 HOH HOH . N 5 HOH C 12 512 11 HOH HOH . N 5 HOH C 13 513 42 HOH HOH . N 5 HOH C 14 514 23 HOH HOH . N 5 HOH C 15 515 17 HOH HOH . N 5 HOH C 16 516 57 HOH HOH . N 5 HOH C 17 517 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . G 2 -25.65 24.454 -28.154 1 64.39 ? C1 PEG 401 B 1 HETATM 2 O O1 PEG . . . G 2 -26.564 23.362 -28.221 1 68.11 ? O1 PEG 401 B 1 HETATM 3 C C2 PEG . . . G 2 -26.239 25.666 -27.435 1 69.16 ? C2 PEG 401 B 1 HETATM 4 O O2 PEG . . . G 2 -26.145 25.544 -26.01 1 75.99 ? O2 PEG 401 B 1 HETATM 5 C C3 PEG . . . G 2 -25.619 26.699 -25.332 1 52.47 ? C3 PEG 401 B 1 HETATM 6 C C4 PEG . . . G 2 -25.849 26.53 -23.837 1 61.29 ? C4 PEG 401 B 1 HETATM 7 O O4 PEG . . . G 2 -24.914 25.677 -23.171 1 68.73 ? O4 PEG 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #