data_5TRF # _model_server_result.job_id tnWOMs3KoNhThbny1vsAeA _model_server_result.datetime_utc '2024-10-12 15:32:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5trf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":204}' # _entry.id 5TRF # _exptl.entry_id 5TRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TRF _cell.length_a 138.849 _cell.length_b 138.849 _cell.length_c 83.707 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 PISA dimeric 2 software_defined_assembly 7 PISA dimeric 2 software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,H,I,J,U 1 1 B,K,L,M,V 2 1 C,N,O,P,Q,W 3 1 D,R,X 4 1 E,S,T,Y 5 1 A,F,G,H,I,J,U 6 1,4 B,K,L,M,V 7 1 D,R,X 7 2 C,N,O,P,Q,W 8 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z+1/4 0 1 0 -1 0 0 0 0 1 -69.4245 69.4245 20.92675 3 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 83.707 4 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 41.8535 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N ? 4 P N N ? 4 Q N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 205 n n C1 C2 GOL sing 206 n n C1 H11 GOL sing 207 n n C1 H12 GOL sing 208 n n O1 HO1 GOL sing 209 n n C2 O2 GOL sing 210 n n C2 C3 GOL sing 211 n n C2 H2 GOL sing 212 n n O2 HO2 GOL sing 213 n n C3 O3 GOL sing 214 n n C3 H31 GOL sing 215 n n C3 H32 GOL sing 216 n n O3 HO3 GOL sing 217 n n # _atom_sites.entry_id 5TRF _atom_sites.fract_transf_matrix[1][1] 0.007202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 7HC A 1 201 1 7HC 773 . G 3 SO4 A 1 202 2 SO4 SO4 . H 4 GOL A 1 203 4 GOL GOL . I 4 GOL A 1 204 7 GOL GOL . J 4 GOL A 1 205 6 GOL GOL . K 2 7HC B 1 201 1 7HC 773 . L 4 GOL B 1 202 1 GOL GOL . M 4 GOL B 1 203 2 GOL GOL . N 2 7HC C 1 201 1 7HC 773 . O 3 SO4 C 1 202 3 SO4 SO4 . P 4 GOL C 1 203 3 GOL GOL . Q 4 GOL C 1 204 5 GOL GOL . R 2 7HC D 1 201 1 7HC 773 . S 2 7HC E 1 201 1 7HC 773 . T 3 SO4 E 1 202 5 SO4 SO4 . U 5 HOH A 1 301 248 HOH HOH . U 5 HOH A 2 302 249 HOH HOH . U 5 HOH A 3 303 28 HOH HOH . U 5 HOH A 4 304 258 HOH HOH . U 5 HOH A 5 305 84 HOH HOH . U 5 HOH A 6 306 27 HOH HOH . U 5 HOH A 7 307 225 HOH HOH . U 5 HOH A 8 308 140 HOH HOH . U 5 HOH A 9 309 253 HOH HOH . U 5 HOH A 10 310 171 HOH HOH . U 5 HOH A 11 311 221 HOH HOH . U 5 HOH A 12 312 92 HOH HOH . U 5 HOH A 13 313 257 HOH HOH . U 5 HOH A 14 314 247 HOH HOH . U 5 HOH A 15 315 215 HOH HOH . U 5 HOH A 16 316 255 HOH HOH . U 5 HOH A 17 317 77 HOH HOH . U 5 HOH A 18 318 46 HOH HOH . U 5 HOH A 19 319 85 HOH HOH . U 5 HOH A 20 320 82 HOH HOH . U 5 HOH A 21 321 209 HOH HOH . U 5 HOH A 22 322 123 HOH HOH . U 5 HOH A 23 323 116 HOH HOH . U 5 HOH A 24 324 232 HOH HOH . U 5 HOH A 25 325 99 HOH HOH . U 5 HOH A 26 326 181 HOH HOH . U 5 HOH A 27 327 87 HOH HOH . U 5 HOH A 28 328 4 HOH HOH . U 5 HOH A 29 329 154 HOH HOH . U 5 HOH A 30 330 43 HOH HOH . U 5 HOH A 31 331 240 HOH HOH . U 5 HOH A 32 332 36 HOH HOH . U 5 HOH A 33 333 60 HOH HOH . U 5 HOH A 34 334 252 HOH HOH . U 5 HOH A 35 335 121 HOH HOH . U 5 HOH A 36 336 109 HOH HOH . U 5 HOH A 37 337 75 HOH HOH . U 5 HOH A 38 338 170 HOH HOH . U 5 HOH A 39 339 64 HOH HOH . U 5 HOH A 40 340 172 HOH HOH . U 5 HOH A 41 341 49 HOH HOH . U 5 HOH A 42 342 164 HOH HOH . U 5 HOH A 43 343 239 HOH HOH . U 5 HOH A 44 344 102 HOH HOH . U 5 HOH A 45 345 106 HOH HOH . U 5 HOH A 46 346 54 HOH HOH . U 5 HOH A 47 347 34 HOH HOH . U 5 HOH A 48 348 97 HOH HOH . U 5 HOH A 49 349 211 HOH HOH . U 5 HOH A 50 350 144 HOH HOH . U 5 HOH A 51 351 222 HOH HOH . U 5 HOH A 52 352 196 HOH HOH . U 5 HOH A 53 353 124 HOH HOH . U 5 HOH A 54 354 126 HOH HOH . U 5 HOH A 55 355 237 HOH HOH . U 5 HOH A 56 356 254 HOH HOH . U 5 HOH A 57 357 6 HOH HOH . U 5 HOH A 58 358 261 HOH HOH . U 5 HOH A 59 359 79 HOH HOH . U 5 HOH A 60 360 163 HOH HOH . U 5 HOH A 61 361 80 HOH HOH . U 5 HOH A 62 362 185 HOH HOH . U 5 HOH A 63 363 53 HOH HOH . U 5 HOH A 64 364 241 HOH HOH . U 5 HOH A 65 365 189 HOH HOH . U 5 HOH A 66 366 197 HOH HOH . U 5 HOH A 67 367 194 HOH HOH . U 5 HOH A 68 368 201 HOH HOH . U 5 HOH A 69 369 176 HOH HOH . U 5 HOH A 70 370 207 HOH HOH . U 5 HOH A 71 371 190 HOH HOH . V 5 HOH B 1 301 50 HOH HOH . V 5 HOH B 2 302 165 HOH HOH . V 5 HOH B 3 303 86 HOH HOH . V 5 HOH B 4 304 220 HOH HOH . V 5 HOH B 5 305 263 HOH HOH . V 5 HOH B 6 306 1 HOH HOH . V 5 HOH B 7 307 111 HOH HOH . V 5 HOH B 8 308 51 HOH HOH . V 5 HOH B 9 309 206 HOH HOH . V 5 HOH B 10 310 37 HOH HOH . V 5 HOH B 11 311 162 HOH HOH . V 5 HOH B 12 312 166 HOH HOH . V 5 HOH B 13 313 114 HOH HOH . V 5 HOH B 14 314 19 HOH HOH . V 5 HOH B 15 315 67 HOH HOH . V 5 HOH B 16 316 9 HOH HOH . V 5 HOH B 17 317 167 HOH HOH . V 5 HOH B 18 318 233 HOH HOH . V 5 HOH B 19 319 128 HOH HOH . V 5 HOH B 20 320 125 HOH HOH . V 5 HOH B 21 321 149 HOH HOH . V 5 HOH B 22 322 159 HOH HOH . V 5 HOH B 23 323 63 HOH HOH . V 5 HOH B 24 324 234 HOH HOH . V 5 HOH B 25 325 38 HOH HOH . V 5 HOH B 26 326 88 HOH HOH . V 5 HOH B 27 327 195 HOH HOH . V 5 HOH B 28 328 40 HOH HOH . V 5 HOH B 29 329 152 HOH HOH . V 5 HOH B 30 330 58 HOH HOH . V 5 HOH B 31 331 242 HOH HOH . V 5 HOH B 32 332 65 HOH HOH . V 5 HOH B 33 333 48 HOH HOH . V 5 HOH B 34 334 202 HOH HOH . V 5 HOH B 35 335 161 HOH HOH . V 5 HOH B 36 336 89 HOH HOH . V 5 HOH B 37 337 145 HOH HOH . V 5 HOH B 38 338 62 HOH HOH . V 5 HOH B 39 339 61 HOH HOH . V 5 HOH B 40 340 55 HOH HOH . V 5 HOH B 41 341 226 HOH HOH . V 5 HOH B 42 342 57 HOH HOH . V 5 HOH B 43 343 243 HOH HOH . V 5 HOH B 44 344 76 HOH HOH . V 5 HOH B 45 345 68 HOH HOH . V 5 HOH B 46 346 177 HOH HOH . V 5 HOH B 47 347 186 HOH HOH . V 5 HOH B 48 348 169 HOH HOH . V 5 HOH B 49 349 188 HOH HOH . V 5 HOH B 50 350 205 HOH HOH . V 5 HOH B 51 351 138 HOH HOH . V 5 HOH B 52 352 192 HOH HOH . V 5 HOH B 53 353 11 HOH HOH . V 5 HOH B 54 354 56 HOH HOH . V 5 HOH B 55 355 120 HOH HOH . V 5 HOH B 56 356 203 HOH HOH . V 5 HOH B 57 357 139 HOH HOH . V 5 HOH B 58 358 199 HOH HOH . V 5 HOH B 59 359 200 HOH HOH . V 5 HOH B 60 360 230 HOH HOH . V 5 HOH B 61 361 136 HOH HOH . V 5 HOH B 62 362 122 HOH HOH . V 5 HOH B 63 363 112 HOH HOH . W 5 HOH C 1 301 131 HOH HOH . W 5 HOH C 2 302 244 HOH HOH . W 5 HOH C 3 303 44 HOH HOH . W 5 HOH C 4 304 104 HOH HOH . W 5 HOH C 5 305 229 HOH HOH . W 5 HOH C 6 306 14 HOH HOH . W 5 HOH C 7 307 3 HOH HOH . W 5 HOH C 8 308 204 HOH HOH . W 5 HOH C 9 309 127 HOH HOH . W 5 HOH C 10 310 74 HOH HOH . W 5 HOH C 11 311 41 HOH HOH . W 5 HOH C 12 312 246 HOH HOH . W 5 HOH C 13 313 98 HOH HOH . W 5 HOH C 14 314 30 HOH HOH . W 5 HOH C 15 315 217 HOH HOH . W 5 HOH C 16 316 160 HOH HOH . W 5 HOH C 17 317 24 HOH HOH . W 5 HOH C 18 318 146 HOH HOH . W 5 HOH C 19 319 262 HOH HOH . W 5 HOH C 20 320 156 HOH HOH . W 5 HOH C 21 321 45 HOH HOH . W 5 HOH C 22 322 17 HOH HOH . W 5 HOH C 23 323 108 HOH HOH . W 5 HOH C 24 324 90 HOH HOH . W 5 HOH C 25 325 130 HOH HOH . W 5 HOH C 26 326 66 HOH HOH . W 5 HOH C 27 327 73 HOH HOH . W 5 HOH C 28 328 231 HOH HOH . W 5 HOH C 29 329 20 HOH HOH . W 5 HOH C 30 330 208 HOH HOH . W 5 HOH C 31 331 16 HOH HOH . W 5 HOH C 32 332 256 HOH HOH . W 5 HOH C 33 333 129 HOH HOH . W 5 HOH C 34 334 184 HOH HOH . W 5 HOH C 35 335 12 HOH HOH . W 5 HOH C 36 336 118 HOH HOH . W 5 HOH C 37 337 236 HOH HOH . W 5 HOH C 38 338 18 HOH HOH . W 5 HOH C 39 339 10 HOH HOH . W 5 HOH C 40 340 69 HOH HOH . W 5 HOH C 41 341 238 HOH HOH . W 5 HOH C 42 342 137 HOH HOH . W 5 HOH C 43 343 187 HOH HOH . W 5 HOH C 44 344 150 HOH HOH . W 5 HOH C 45 345 115 HOH HOH . W 5 HOH C 46 346 23 HOH HOH . W 5 HOH C 47 347 227 HOH HOH . W 5 HOH C 48 348 71 HOH HOH . W 5 HOH C 49 349 113 HOH HOH . X 5 HOH D 1 301 101 HOH HOH . X 5 HOH D 2 302 173 HOH HOH . X 5 HOH D 3 303 132 HOH HOH . X 5 HOH D 4 304 42 HOH HOH . X 5 HOH D 5 305 103 HOH HOH . X 5 HOH D 6 306 83 HOH HOH . X 5 HOH D 7 307 224 HOH HOH . X 5 HOH D 8 308 13 HOH HOH . X 5 HOH D 9 309 117 HOH HOH . X 5 HOH D 10 310 105 HOH HOH . X 5 HOH D 11 311 142 HOH HOH . X 5 HOH D 12 312 21 HOH HOH . X 5 HOH D 13 313 141 HOH HOH . X 5 HOH D 14 314 96 HOH HOH . X 5 HOH D 15 315 2 HOH HOH . X 5 HOH D 16 316 174 HOH HOH . X 5 HOH D 17 317 70 HOH HOH . X 5 HOH D 18 318 143 HOH HOH . X 5 HOH D 19 319 95 HOH HOH . X 5 HOH D 20 320 8 HOH HOH . X 5 HOH D 21 321 59 HOH HOH . X 5 HOH D 22 322 119 HOH HOH . X 5 HOH D 23 323 147 HOH HOH . X 5 HOH D 24 324 180 HOH HOH . X 5 HOH D 25 325 183 HOH HOH . X 5 HOH D 26 326 245 HOH HOH . X 5 HOH D 27 327 29 HOH HOH . X 5 HOH D 28 328 33 HOH HOH . X 5 HOH D 29 329 39 HOH HOH . X 5 HOH D 30 330 218 HOH HOH . X 5 HOH D 31 331 198 HOH HOH . X 5 HOH D 32 332 213 HOH HOH . X 5 HOH D 33 333 158 HOH HOH . X 5 HOH D 34 334 93 HOH HOH . X 5 HOH D 35 335 235 HOH HOH . X 5 HOH D 36 336 260 HOH HOH . X 5 HOH D 37 337 214 HOH HOH . X 5 HOH D 38 338 179 HOH HOH . X 5 HOH D 39 339 91 HOH HOH . X 5 HOH D 40 340 212 HOH HOH . X 5 HOH D 41 341 219 HOH HOH . X 5 HOH D 42 342 175 HOH HOH . Y 5 HOH E 1 301 81 HOH HOH . Y 5 HOH E 2 302 22 HOH HOH . Y 5 HOH E 3 303 228 HOH HOH . Y 5 HOH E 4 304 35 HOH HOH . Y 5 HOH E 5 305 78 HOH HOH . Y 5 HOH E 6 306 148 HOH HOH . Y 5 HOH E 7 307 223 HOH HOH . Y 5 HOH E 8 308 251 HOH HOH . Y 5 HOH E 9 309 5 HOH HOH . Y 5 HOH E 10 310 94 HOH HOH . Y 5 HOH E 11 311 52 HOH HOH . Y 5 HOH E 12 312 15 HOH HOH . Y 5 HOH E 13 313 100 HOH HOH . Y 5 HOH E 14 314 107 HOH HOH . Y 5 HOH E 15 315 26 HOH HOH . Y 5 HOH E 16 316 155 HOH HOH . Y 5 HOH E 17 317 25 HOH HOH . Y 5 HOH E 18 318 250 HOH HOH . Y 5 HOH E 19 319 47 HOH HOH . Y 5 HOH E 20 320 153 HOH HOH . Y 5 HOH E 21 321 168 HOH HOH . Y 5 HOH E 22 322 31 HOH HOH . Y 5 HOH E 23 323 72 HOH HOH . Y 5 HOH E 24 324 110 HOH HOH . Y 5 HOH E 25 325 7 HOH HOH . Y 5 HOH E 26 326 134 HOH HOH . Y 5 HOH E 27 327 191 HOH HOH . Y 5 HOH E 28 328 157 HOH HOH . Y 5 HOH E 29 329 151 HOH HOH . Y 5 HOH E 30 330 259 HOH HOH . Y 5 HOH E 31 331 216 HOH HOH . Y 5 HOH E 32 332 193 HOH HOH . Y 5 HOH E 33 333 182 HOH HOH . Y 5 HOH E 34 334 133 HOH HOH . Y 5 HOH E 35 335 32 HOH HOH . Y 5 HOH E 36 336 135 HOH HOH . Y 5 HOH E 37 337 178 HOH HOH . Y 5 HOH E 38 338 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 0.872 34.869 28.679 1 55.55 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . I 4 1.395 34.614 27.391 1 54.74 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . I 4 2.036 34.99 29.585 1 55.76 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . I 4 3.013 34.024 29.131 1 57.58 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . I 4 1.635 34.808 31.076 1 55.83 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . I 4 0.736 35.87 31.487 1 55.93 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #