data_5TRS
#
_model_server_result.job_id            qNlBVUXnbNvyL-LWMGlqtQ 
_model_server_result.datetime_utc      '2024-10-10 14:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5trs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":301}' 
#
_entry.id    5TRS 
#
_exptl.entry_id    5TRS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              553.607 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-tert-butoxy-N~2~-(5-methyl-1,2-oxazole-3-carbonyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.133 
_cell.angle_gamma         90 
_cell.entry_id            5TRS 
_cell.length_a            120.509 
_cell.length_b            198.301 
_cell.length_c            165.941 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TRS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 JA N N 
? 3 KA N N 
? 3 LA N N 
? 3 MA N N 
? 3 NA N N 
? 3 OA N N 
? 3 PA N N 
#
_chem_comp.formula           'C28 H35 N5 O7' 
_chem_comp.formula_weight    553.607 
_chem_comp.id                7HZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-tert-butoxy-N~2~-(5-methyl-1,2-oxazole-3-carbonyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C11 7HZ doub 1 n y 
C10 C09 7HZ sing 2 n y 
C11 C12 7HZ sing 3 n y 
C09 C08 7HZ doub 4 n y 
C12 C17 7HZ doub 5 n y 
C12 C13 7HZ sing 6 n y 
C08 C13 7HZ sing 7 n y 
C08 C07 7HZ sing 8 n n 
C17 C16 7HZ sing 9 n y 
C13 C14 7HZ doub 10 n y 
C07 N06 7HZ sing 11 n n 
N06 C05 7HZ sing 12 n n 
C16 C15 7HZ doub 13 n y 
C14 C15 7HZ sing 14 n y 
C21 O20 7HZ sing 15 n n 
C05 C04 7HZ sing 16 n n 
C05 O18 7HZ doub 17 n n 
O20 C19 7HZ sing 18 n n 
C04 C19 7HZ sing 19 n n 
C04 N03 7HZ sing 20 n n 
O01 C02 7HZ doub 21 n n 
C02 N03 7HZ sing 22 n n 
C02 C22 7HZ sing 23 n n 
C38 C37 7HZ sing 24 n n 
C39 C37 7HZ doub 25 n y 
C39 C34 7HZ sing 26 n y 
N32 C22 7HZ sing 27 n n 
N32 C33 7HZ sing 28 n n 
C23 C22 7HZ sing 29 n n 
C23 C24 7HZ sing 30 n n 
C37 O36 7HZ sing 31 n y 
C34 C33 7HZ sing 32 n n 
C34 N35 7HZ doub 33 n y 
C33 O40 7HZ doub 34 n n 
C24 N25 7HZ sing 35 n n 
C24 O31 7HZ doub 36 n n 
O36 N35 7HZ sing 37 n y 
C30 C27 7HZ sing 38 n n 
N25 O26 7HZ sing 39 n n 
C28 C27 7HZ sing 40 n n 
C27 O26 7HZ sing 41 n n 
C27 C29 7HZ sing 42 n n 
N03 H1 7HZ sing 43 n n 
C04 H2 7HZ sing 44 n n 
N06 H3 7HZ sing 45 n n 
C07 H4 7HZ sing 46 n n 
C07 H5 7HZ sing 47 n n 
C09 H6 7HZ sing 48 n n 
C10 H7 7HZ sing 49 n n 
C11 H8 7HZ sing 50 n n 
C14 H9 7HZ sing 51 n n 
C15 H10 7HZ sing 52 n n 
C16 H11 7HZ sing 53 n n 
C17 H12 7HZ sing 54 n n 
C19 H13 7HZ sing 55 n n 
C19 H14 7HZ sing 56 n n 
C21 H15 7HZ sing 57 n n 
C21 H16 7HZ sing 58 n n 
C21 H17 7HZ sing 59 n n 
C22 H18 7HZ sing 60 n n 
C23 H19 7HZ sing 61 n n 
C23 H20 7HZ sing 62 n n 
N25 H21 7HZ sing 63 n n 
C28 H22 7HZ sing 64 n n 
C28 H23 7HZ sing 65 n n 
C28 H24 7HZ sing 66 n n 
C29 H25 7HZ sing 67 n n 
C29 H26 7HZ sing 68 n n 
C29 H27 7HZ sing 69 n n 
C30 H28 7HZ sing 70 n n 
C30 H29 7HZ sing 71 n n 
C30 H30 7HZ sing 72 n n 
N32 H31 7HZ sing 73 n n 
C38 H32 7HZ sing 74 n n 
C38 H33 7HZ sing 75 n n 
C38 H34 7HZ sing 76 n n 
C39 H35 7HZ sing 77 n n 
#
_atom_sites.entry_id                     5TRS 
_atom_sites.fract_transf_matrix[1][1]    0.008298 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001936 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005043 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006188 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 3 7HZ H 1 301 223 7HZ 144 . 
DA 3 7HZ I 1 301 223 7HZ 144 . 
EA 3 7HZ J 1 301 223 7HZ 144 . 
FA 3 7HZ K 1 301 224 7HZ 144 . 
GA 3 7HZ L 1 301 225 7HZ 144 . 
HA 3 7HZ M 1 301 224 7HZ 144 . 
IA 3 7HZ N 1 301 224 7HZ 144 . 
JA 3 7HZ V 1 301 224 7HZ 144 . 
KA 3 7HZ W 1 301 224 7HZ 144 . 
LA 3 7HZ X 1 301 223 7HZ 144 . 
MA 3 7HZ Y 1 301 224 7HZ 144 . 
NA 3 7HZ Z 1 301 224 7HZ 144 . 
OA 3 7HZ a 1 301 225 7HZ 144 . 
PA 3 7HZ b 1 301 224 7HZ 144 . 
QA 4 HOH A 1 301 18 HOH HOH . 
QA 4 HOH A 2 302 34 HOH HOH . 
RA 4 HOH B 1 301 16 HOH HOH . 
SA 4 HOH D 1 301 54 HOH HOH . 
SA 4 HOH D 2 302 5 HOH HOH . 
TA 4 HOH F 1 301 56 HOH HOH . 
TA 4 HOH F 2 302 40 HOH HOH . 
UA 4 HOH G 1 301 58 HOH HOH . 
VA 4 HOH H 1 401 12 HOH HOH . 
VA 4 HOH H 2 402 21 HOH HOH . 
VA 4 HOH H 3 403 70 HOH HOH . 
VA 4 HOH H 4 404 2 HOH HOH . 
VA 4 HOH H 5 405 41 HOH HOH . 
VA 4 HOH H 6 406 71 HOH HOH . 
VA 4 HOH H 7 407 69 HOH HOH . 
WA 4 HOH I 1 401 37 HOH HOH . 
WA 4 HOH I 2 402 33 HOH HOH . 
WA 4 HOH I 3 403 31 HOH HOH . 
WA 4 HOH I 4 404 20 HOH HOH . 
WA 4 HOH I 5 405 43 HOH HOH . 
XA 4 HOH J 1 401 36 HOH HOH . 
XA 4 HOH J 2 402 72 HOH HOH . 
XA 4 HOH J 3 403 64 HOH HOH . 
XA 4 HOH J 4 404 46 HOH HOH . 
XA 4 HOH J 5 405 53 HOH HOH . 
YA 4 HOH K 1 401 73 HOH HOH . 
YA 4 HOH K 2 402 48 HOH HOH . 
YA 4 HOH K 3 403 32 HOH HOH . 
YA 4 HOH K 4 404 8 HOH HOH . 
YA 4 HOH K 5 405 61 HOH HOH . 
YA 4 HOH K 6 406 74 HOH HOH . 
ZA 4 HOH L 1 401 57 HOH HOH . 
ZA 4 HOH L 2 402 14 HOH HOH . 
ZA 4 HOH L 3 403 75 HOH HOH . 
ZA 4 HOH L 4 404 23 HOH HOH . 
ZA 4 HOH L 5 405 76 HOH HOH . 
AB 4 HOH M 1 401 47 HOH HOH . 
AB 4 HOH M 2 402 77 HOH HOH . 
AB 4 HOH M 3 403 59 HOH HOH . 
AB 4 HOH M 4 404 6 HOH HOH . 
AB 4 HOH M 5 405 78 HOH HOH . 
AB 4 HOH M 6 406 50 HOH HOH . 
AB 4 HOH M 7 407 80 HOH HOH . 
BB 4 HOH N 1 401 79 HOH HOH . 
BB 4 HOH N 2 402 51 HOH HOH . 
BB 4 HOH N 3 403 68 HOH HOH . 
BB 4 HOH N 4 404 27 HOH HOH . 
BB 4 HOH N 5 405 63 HOH HOH . 
CB 4 HOH O 1 301 44 HOH HOH . 
DB 4 HOH P 1 301 17 HOH HOH . 
EB 4 HOH Q 1 301 28 HOH HOH . 
FB 4 HOH R 1 301 35 HOH HOH . 
GB 4 HOH S 1 301 9 HOH HOH . 
GB 4 HOH S 2 302 66 HOH HOH . 
HB 4 HOH T 1 301 65 HOH HOH . 
IB 4 HOH U 1 301 7 HOH HOH . 
JB 4 HOH V 1 401 4 HOH HOH . 
JB 4 HOH V 2 402 10 HOH HOH . 
JB 4 HOH V 3 403 82 HOH HOH . 
JB 4 HOH V 4 404 60 HOH HOH . 
KB 4 HOH W 1 401 83 HOH HOH . 
KB 4 HOH W 2 402 49 HOH HOH . 
KB 4 HOH W 3 403 84 HOH HOH . 
LB 4 HOH X 1 401 22 HOH HOH . 
LB 4 HOH X 2 402 19 HOH HOH . 
LB 4 HOH X 3 403 55 HOH HOH . 
LB 4 HOH X 4 404 85 HOH HOH . 
LB 4 HOH X 5 405 39 HOH HOH . 
MB 4 HOH Y 1 401 88 HOH HOH . 
MB 4 HOH Y 2 402 24 HOH HOH . 
MB 4 HOH Y 3 403 13 HOH HOH . 
MB 4 HOH Y 4 404 86 HOH HOH . 
MB 4 HOH Y 5 405 15 HOH HOH . 
MB 4 HOH Y 6 406 62 HOH HOH . 
MB 4 HOH Y 7 407 87 HOH HOH . 
NB 4 HOH Z 1 401 38 HOH HOH . 
NB 4 HOH Z 2 402 3 HOH HOH . 
NB 4 HOH Z 3 403 67 HOH HOH . 
NB 4 HOH Z 4 404 45 HOH HOH . 
NB 4 HOH Z 5 405 26 HOH HOH . 
OB 4 HOH a 1 401 89 HOH HOH . 
OB 4 HOH a 2 402 42 HOH HOH . 
OB 4 HOH a 3 403 52 HOH HOH . 
OB 4 HOH a 4 404 1 HOH HOH . 
OB 4 HOH a 5 405 11 HOH HOH . 
OB 4 HOH a 6 406 90 HOH HOH . 
PB 4 HOH b 1 401 81 HOH HOH . 
PB 4 HOH b 2 402 25 HOH HOH . 
PB 4 HOH b 3 403 30 HOH HOH . 
PB 4 HOH b 4 404 29 HOH HOH . 
PB 4 HOH b 5 405 92 HOH HOH . 
PB 4 HOH b 6 406 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C39 7HZ . . . CA 3 -4.381 -25.297 35.871 1 71.86 ? C39 7HZ 301 H 1 
HETATM 2 C C37 7HZ . . . CA 3 -3.451 -24.324 36.266 1 67.53 ? C37 7HZ 301 H 1 
HETATM 3 C C38 7HZ . . . CA 3 -2.307 -23.734 35.526 1 64.02 ? C38 7HZ 301 H 1 
HETATM 4 O O36 7HZ . . . CA 3 -3.791 -23.979 37.552 1 75.75 ? O36 7HZ 301 H 1 
HETATM 5 N N35 7HZ . . . CA 3 -4.859 -24.66 37.986 1 76.91 ? N35 7HZ 301 H 1 
HETATM 6 C C34 7HZ . . . CA 3 -5.283 -25.497 37.011 1 64.88 ? C34 7HZ 301 H 1 
HETATM 7 C C33 7HZ . . . CA 3 -6.442 -26.424 37.094 1 59.62 ? C33 7HZ 301 H 1 
HETATM 8 O O40 7HZ . . . CA 3 -6.975 -26.579 38.213 1 73 ? O40 7HZ 301 H 1 
HETATM 9 O O01 7HZ . . . CA 3 -7.91 -28.512 33.964 1 49.31 ? O01 7HZ 301 H 1 
HETATM 10 C C02 7HZ . . . CA 3 -8.122 -28.989 35.098 1 49.98 ? C02 7HZ 301 H 1 
HETATM 11 C C22 7HZ . . . CA 3 -8.159 -28.014 36.211 1 52.58 ? C22 7HZ 301 H 1 
HETATM 12 C C23 7HZ . . . CA 3 -9.502 -27.267 36.146 1 51.5 ? C23 7HZ 301 H 1 
HETATM 13 C C24 7HZ . . . CA 3 -10.32 -27.034 37.367 1 51.12 ? C24 7HZ 301 H 1 
HETATM 14 N N25 7HZ . . . CA 3 -10.796 -25.739 37.688 1 50.9 ? N25 7HZ 301 H 1 
HETATM 15 O O26 7HZ . . . CA 3 -11.556 -25.469 38.797 1 49.58 ? O26 7HZ 301 H 1 
HETATM 16 C C27 7HZ . . . CA 3 -12.913 -25.086 38.492 1 49.35 ? C27 7HZ 301 H 1 
HETATM 17 C C28 7HZ . . . CA 3 -13.703 -26.199 37.848 1 48.92 ? C28 7HZ 301 H 1 
HETATM 18 C C29 7HZ . . . CA 3 -13.616 -24.662 39.771 1 49.06 ? C29 7HZ 301 H 1 
HETATM 19 C C30 7HZ . . . CA 3 -12.883 -23.872 37.561 1 48.99 ? C30 7HZ 301 H 1 
HETATM 20 O O31 7HZ . . . CA 3 -10.608 -28.001 38.103 1 50.02 ? O31 7HZ 301 H 1 
HETATM 21 N N32 7HZ . . . CA 3 -7.011 -27.138 36.062 1 56.31 ? N32 7HZ 301 H 1 
HETATM 22 O O20 7HZ . . . CA 3 -6.212 -32.371 33.936 1 54.54 ? O20 7HZ 301 H 1 
HETATM 23 N N03 7HZ . . . CA 3 -8.31 -30.34 35.149 1 49.93 ? N03 7HZ 301 H 1 
HETATM 24 C C04 7HZ . . . CA 3 -8.261 -31.127 33.954 1 49.77 ? C04 7HZ 301 H 1 
HETATM 25 C C05 7HZ . . . CA 3 -9.699 -31.366 33.436 1 47.21 ? C05 7HZ 301 H 1 
HETATM 26 O O18 7HZ . . . CA 3 -10.573 -31.459 34.324 1 46.7 ? O18 7HZ 301 H 1 
HETATM 27 C C19 7HZ . . . CA 3 -7.584 -32.467 34.253 1 51.28 ? C19 7HZ 301 H 1 
HETATM 28 C C21 7HZ . . . CA 3 -5.851 -33.363 32.99 1 74.97 ? C21 7HZ 301 H 1 
HETATM 29 C C11 7HZ . . . CA 3 -13.4 -28.683 29.224 1 44.87 ? C11 7HZ 301 H 1 
HETATM 30 C C10 7HZ . . . CA 3 -12.762 -29.744 28.633 1 44.7 ? C10 7HZ 301 H 1 
HETATM 31 C C12 7HZ . . . CA 3 -13.399 -28.557 30.634 1 44.22 ? C12 7HZ 301 H 1 
HETATM 32 C C14 7HZ . . . CA 3 -12.794 -29.311 32.792 1 43.53 ? C14 7HZ 301 H 1 
HETATM 33 C C13 7HZ . . . CA 3 -12.763 -29.486 31.389 1 44.15 ? C13 7HZ 301 H 1 
HETATM 34 C C15 7HZ . . . CA 3 -13.432 -28.254 33.385 1 44.09 ? C15 7HZ 301 H 1 
HETATM 35 N N06 7HZ . . . CA 3 -10.037 -31.457 32.112 1 46.43 ? N06 7HZ 301 H 1 
HETATM 36 C C07 7HZ . . . CA 3 -11.363 -31.696 31.576 1 44.55 ? C07 7HZ 301 H 1 
HETATM 37 C C08 7HZ . . . CA 3 -12.076 -30.603 30.794 1 43.56 ? C08 7HZ 301 H 1 
HETATM 38 C C09 7HZ . . . CA 3 -12.105 -30.698 29.424 1 44.35 ? C09 7HZ 301 H 1 
HETATM 39 C C16 7HZ . . . CA 3 -14.08 -27.304 32.599 1 44.54 ? C16 7HZ 301 H 1 
HETATM 40 C C17 7HZ . . . CA 3 -14.064 -27.448 31.241 1 44.9 ? C17 7HZ 301 H 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#