data_5TRS # _model_server_result.job_id Utg-OPhh4KCA47_0goC2fQ _model_server_result.datetime_utc '2024-10-10 14:24:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5trs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":301}' # _entry.id 5TRS # _exptl.entry_id 5TRS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 553.607 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-tert-butoxy-N~2~-(5-methyl-1,2-oxazole-3-carbonyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.133 _cell.angle_gamma 90 _cell.entry_id 5TRS _cell.length_a 120.509 _cell.length_b 198.301 _cell.length_c 165.941 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N # _chem_comp.formula 'C28 H35 N5 O7' _chem_comp.formula_weight 553.607 _chem_comp.id 7HZ _chem_comp.mon_nstd_flag . _chem_comp.name N-tert-butoxy-N~2~-(5-methyl-1,2-oxazole-3-carbonyl)-L-asparaginyl-O-methyl-N-[(naphthalen-1-yl)methyl]-L-serinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 7HZ doub 1 n y C10 C09 7HZ sing 2 n y C11 C12 7HZ sing 3 n y C09 C08 7HZ doub 4 n y C12 C17 7HZ doub 5 n y C12 C13 7HZ sing 6 n y C08 C13 7HZ sing 7 n y C08 C07 7HZ sing 8 n n C17 C16 7HZ sing 9 n y C13 C14 7HZ doub 10 n y C07 N06 7HZ sing 11 n n N06 C05 7HZ sing 12 n n C16 C15 7HZ doub 13 n y C14 C15 7HZ sing 14 n y C21 O20 7HZ sing 15 n n C05 C04 7HZ sing 16 n n C05 O18 7HZ doub 17 n n O20 C19 7HZ sing 18 n n C04 C19 7HZ sing 19 n n C04 N03 7HZ sing 20 n n O01 C02 7HZ doub 21 n n C02 N03 7HZ sing 22 n n C02 C22 7HZ sing 23 n n C38 C37 7HZ sing 24 n n C39 C37 7HZ doub 25 n y C39 C34 7HZ sing 26 n y N32 C22 7HZ sing 27 n n N32 C33 7HZ sing 28 n n C23 C22 7HZ sing 29 n n C23 C24 7HZ sing 30 n n C37 O36 7HZ sing 31 n y C34 C33 7HZ sing 32 n n C34 N35 7HZ doub 33 n y C33 O40 7HZ doub 34 n n C24 N25 7HZ sing 35 n n C24 O31 7HZ doub 36 n n O36 N35 7HZ sing 37 n y C30 C27 7HZ sing 38 n n N25 O26 7HZ sing 39 n n C28 C27 7HZ sing 40 n n C27 O26 7HZ sing 41 n n C27 C29 7HZ sing 42 n n N03 H1 7HZ sing 43 n n C04 H2 7HZ sing 44 n n N06 H3 7HZ sing 45 n n C07 H4 7HZ sing 46 n n C07 H5 7HZ sing 47 n n C09 H6 7HZ sing 48 n n C10 H7 7HZ sing 49 n n C11 H8 7HZ sing 50 n n C14 H9 7HZ sing 51 n n C15 H10 7HZ sing 52 n n C16 H11 7HZ sing 53 n n C17 H12 7HZ sing 54 n n C19 H13 7HZ sing 55 n n C19 H14 7HZ sing 56 n n C21 H15 7HZ sing 57 n n C21 H16 7HZ sing 58 n n C21 H17 7HZ sing 59 n n C22 H18 7HZ sing 60 n n C23 H19 7HZ sing 61 n n C23 H20 7HZ sing 62 n n N25 H21 7HZ sing 63 n n C28 H22 7HZ sing 64 n n C28 H23 7HZ sing 65 n n C28 H24 7HZ sing 66 n n C29 H25 7HZ sing 67 n n C29 H26 7HZ sing 68 n n C29 H27 7HZ sing 69 n n C30 H28 7HZ sing 70 n n C30 H29 7HZ sing 71 n n C30 H30 7HZ sing 72 n n N32 H31 7HZ sing 73 n n C38 H32 7HZ sing 74 n n C38 H33 7HZ sing 75 n n C38 H34 7HZ sing 76 n n C39 H35 7HZ sing 77 n n # _atom_sites.entry_id 5TRS _atom_sites.fract_transf_matrix[1][1] 0.008298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001936 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 3 7HZ H 1 301 223 7HZ 144 . DA 3 7HZ I 1 301 223 7HZ 144 . EA 3 7HZ J 1 301 223 7HZ 144 . FA 3 7HZ K 1 301 224 7HZ 144 . GA 3 7HZ L 1 301 225 7HZ 144 . HA 3 7HZ M 1 301 224 7HZ 144 . IA 3 7HZ N 1 301 224 7HZ 144 . JA 3 7HZ V 1 301 224 7HZ 144 . KA 3 7HZ W 1 301 224 7HZ 144 . LA 3 7HZ X 1 301 223 7HZ 144 . MA 3 7HZ Y 1 301 224 7HZ 144 . NA 3 7HZ Z 1 301 224 7HZ 144 . OA 3 7HZ a 1 301 225 7HZ 144 . PA 3 7HZ b 1 301 224 7HZ 144 . QA 4 HOH A 1 301 18 HOH HOH . QA 4 HOH A 2 302 34 HOH HOH . RA 4 HOH B 1 301 16 HOH HOH . SA 4 HOH D 1 301 54 HOH HOH . SA 4 HOH D 2 302 5 HOH HOH . TA 4 HOH F 1 301 56 HOH HOH . TA 4 HOH F 2 302 40 HOH HOH . UA 4 HOH G 1 301 58 HOH HOH . VA 4 HOH H 1 401 12 HOH HOH . VA 4 HOH H 2 402 21 HOH HOH . VA 4 HOH H 3 403 70 HOH HOH . VA 4 HOH H 4 404 2 HOH HOH . VA 4 HOH H 5 405 41 HOH HOH . VA 4 HOH H 6 406 71 HOH HOH . VA 4 HOH H 7 407 69 HOH HOH . WA 4 HOH I 1 401 37 HOH HOH . WA 4 HOH I 2 402 33 HOH HOH . WA 4 HOH I 3 403 31 HOH HOH . WA 4 HOH I 4 404 20 HOH HOH . WA 4 HOH I 5 405 43 HOH HOH . XA 4 HOH J 1 401 36 HOH HOH . XA 4 HOH J 2 402 72 HOH HOH . XA 4 HOH J 3 403 64 HOH HOH . XA 4 HOH J 4 404 46 HOH HOH . XA 4 HOH J 5 405 53 HOH HOH . YA 4 HOH K 1 401 73 HOH HOH . YA 4 HOH K 2 402 48 HOH HOH . YA 4 HOH K 3 403 32 HOH HOH . YA 4 HOH K 4 404 8 HOH HOH . YA 4 HOH K 5 405 61 HOH HOH . YA 4 HOH K 6 406 74 HOH HOH . ZA 4 HOH L 1 401 57 HOH HOH . ZA 4 HOH L 2 402 14 HOH HOH . ZA 4 HOH L 3 403 75 HOH HOH . ZA 4 HOH L 4 404 23 HOH HOH . ZA 4 HOH L 5 405 76 HOH HOH . AB 4 HOH M 1 401 47 HOH HOH . AB 4 HOH M 2 402 77 HOH HOH . AB 4 HOH M 3 403 59 HOH HOH . AB 4 HOH M 4 404 6 HOH HOH . AB 4 HOH M 5 405 78 HOH HOH . AB 4 HOH M 6 406 50 HOH HOH . AB 4 HOH M 7 407 80 HOH HOH . BB 4 HOH N 1 401 79 HOH HOH . BB 4 HOH N 2 402 51 HOH HOH . BB 4 HOH N 3 403 68 HOH HOH . BB 4 HOH N 4 404 27 HOH HOH . BB 4 HOH N 5 405 63 HOH HOH . CB 4 HOH O 1 301 44 HOH HOH . DB 4 HOH P 1 301 17 HOH HOH . EB 4 HOH Q 1 301 28 HOH HOH . FB 4 HOH R 1 301 35 HOH HOH . GB 4 HOH S 1 301 9 HOH HOH . GB 4 HOH S 2 302 66 HOH HOH . HB 4 HOH T 1 301 65 HOH HOH . IB 4 HOH U 1 301 7 HOH HOH . JB 4 HOH V 1 401 4 HOH HOH . JB 4 HOH V 2 402 10 HOH HOH . JB 4 HOH V 3 403 82 HOH HOH . JB 4 HOH V 4 404 60 HOH HOH . KB 4 HOH W 1 401 83 HOH HOH . KB 4 HOH W 2 402 49 HOH HOH . KB 4 HOH W 3 403 84 HOH HOH . LB 4 HOH X 1 401 22 HOH HOH . LB 4 HOH X 2 402 19 HOH HOH . LB 4 HOH X 3 403 55 HOH HOH . LB 4 HOH X 4 404 85 HOH HOH . LB 4 HOH X 5 405 39 HOH HOH . MB 4 HOH Y 1 401 88 HOH HOH . MB 4 HOH Y 2 402 24 HOH HOH . MB 4 HOH Y 3 403 13 HOH HOH . MB 4 HOH Y 4 404 86 HOH HOH . MB 4 HOH Y 5 405 15 HOH HOH . MB 4 HOH Y 6 406 62 HOH HOH . MB 4 HOH Y 7 407 87 HOH HOH . NB 4 HOH Z 1 401 38 HOH HOH . NB 4 HOH Z 2 402 3 HOH HOH . NB 4 HOH Z 3 403 67 HOH HOH . NB 4 HOH Z 4 404 45 HOH HOH . NB 4 HOH Z 5 405 26 HOH HOH . OB 4 HOH a 1 401 89 HOH HOH . OB 4 HOH a 2 402 42 HOH HOH . OB 4 HOH a 3 403 52 HOH HOH . OB 4 HOH a 4 404 1 HOH HOH . OB 4 HOH a 5 405 11 HOH HOH . OB 4 HOH a 6 406 90 HOH HOH . PB 4 HOH b 1 401 81 HOH HOH . PB 4 HOH b 2 402 25 HOH HOH . PB 4 HOH b 3 403 30 HOH HOH . PB 4 HOH b 4 404 29 HOH HOH . PB 4 HOH b 5 405 92 HOH HOH . PB 4 HOH b 6 406 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C39 7HZ . . . JA 3 41.614 -20.822 56.261 1 72.66 ? C39 7HZ 301 V 1 HETATM 2 C C37 7HZ . . . JA 3 40.546 -21.586 56.734 1 64.74 ? C37 7HZ 301 V 1 HETATM 3 C C38 7HZ . . . JA 3 39.841 -22.74 56.109 1 63.4 ? C38 7HZ 301 V 1 HETATM 4 O O36 7HZ . . . JA 3 40.232 -21.054 57.96 1 65.29 ? O36 7HZ 301 V 1 HETATM 5 N N35 7HZ . . . JA 3 41.02 -20.02 58.281 1 58.21 ? N35 7HZ 301 V 1 HETATM 6 C C34 7HZ . . . JA 3 41.905 -19.814 57.288 1 59.86 ? C34 7HZ 301 V 1 HETATM 7 C C33 7HZ . . . JA 3 42.957 -18.759 57.228 1 58.33 ? C33 7HZ 301 V 1 HETATM 8 O O40 7HZ . . . JA 3 42.623 -17.604 56.897 1 61.84 ? O40 7HZ 301 V 1 HETATM 9 O O01 7HZ . . . JA 3 46.585 -19.394 56.26 1 50.42 ? O01 7HZ 301 V 1 HETATM 10 C C02 7HZ . . . JA 3 46.223 -18.203 56.342 1 51.66 ? C02 7HZ 301 V 1 HETATM 11 C C22 7HZ . . . JA 3 45.261 -17.866 57.434 1 54.28 ? C22 7HZ 301 V 1 HETATM 12 C C23 7HZ . . . JA 3 46.05 -17.66 58.76 1 53.91 ? C23 7HZ 301 V 1 HETATM 13 C C24 7HZ . . . JA 3 45.69 -16.577 59.718 1 55.4 ? C24 7HZ 301 V 1 HETATM 14 N N25 7HZ . . . JA 3 45.314 -16.872 61.021 1 61.68 ? N25 7HZ 301 V 1 HETATM 15 O O26 7HZ . . . JA 3 44.989 -15.912 61.931 1 55.22 ? O26 7HZ 301 V 1 HETATM 16 C C27 7HZ . . . JA 3 45.962 -15.849 62.974 1 53.88 ? C27 7HZ 301 V 1 HETATM 17 C C28 7HZ . . . JA 3 46.228 -17.211 63.577 1 52.53 ? C28 7HZ 301 V 1 HETATM 18 C C29 7HZ . . . JA 3 45.481 -14.889 64.043 1 54.48 ? C29 7HZ 301 V 1 HETATM 19 C C30 7HZ . . . JA 3 47.276 -15.282 62.403 1 54.92 ? C30 7HZ 301 V 1 HETATM 20 O O31 7HZ . . . JA 3 45.742 -15.383 59.365 1 54.05 ? O31 7HZ 301 V 1 HETATM 21 N N32 7HZ . . . JA 3 44.285 -18.921 57.502 1 56.2 ? N32 7HZ 301 V 1 HETATM 22 O O20 7HZ . . . JA 3 48.009 -17.86 52.067 1 65.89 ? O20 7HZ 301 V 1 HETATM 23 N N03 7HZ . . . JA 3 46.769 -17.354 55.433 1 51.49 ? N03 7HZ 301 V 1 HETATM 24 C C04 7HZ . . . JA 3 47.714 -17.789 54.457 1 51.14 ? C04 7HZ 301 V 1 HETATM 25 C C05 7HZ . . . JA 3 49.087 -17.376 54.991 1 48.98 ? C05 7HZ 301 V 1 HETATM 26 O O18 7HZ . . . JA 3 49.117 -16.232 55.477 1 52.35 ? O18 7HZ 301 V 1 HETATM 27 C C19 7HZ . . . JA 3 47.44 -17.09 53.114 1 52.61 ? C19 7HZ 301 V 1 HETATM 28 C C21 7HZ . . . JA 3 47.103 -18.862 51.625 1 53.03 ? C21 7HZ 301 V 1 HETATM 29 C C11 7HZ . . . JA 3 53.368 -20.405 58.441 1 46.44 ? C11 7HZ 301 V 1 HETATM 30 C C10 7HZ . . . JA 3 53.682 -20.483 57.103 1 45.94 ? C10 7HZ 301 V 1 HETATM 31 C C12 7HZ . . . JA 3 52.417 -19.446 58.881 1 46.21 ? C12 7HZ 301 V 1 HETATM 32 C C14 7HZ . . . JA 3 50.884 -17.676 58.472 1 46.2 ? C14 7HZ 301 V 1 HETATM 33 C C13 7HZ . . . JA 3 51.824 -18.611 57.973 1 45.72 ? C13 7HZ 301 V 1 HETATM 34 C C15 7HZ . . . JA 3 50.57 -17.596 59.804 1 46.17 ? C15 7HZ 301 V 1 HETATM 35 N N06 7HZ . . . JA 3 50.202 -18.157 55.003 1 48.47 ? N06 7HZ 301 V 1 HETATM 36 C C07 7HZ . . . JA 3 51.519 -17.784 55.511 1 46.85 ? C07 7HZ 301 V 1 HETATM 37 C C08 7HZ . . . JA 3 52.136 -18.676 56.566 1 45.75 ? C08 7HZ 301 V 1 HETATM 38 C C09 7HZ . . . JA 3 53.062 -19.614 56.173 1 45.95 ? C09 7HZ 301 V 1 HETATM 39 C C16 7HZ . . . JA 3 51.177 -18.451 60.724 1 46.59 ? C16 7HZ 301 V 1 HETATM 40 C C17 7HZ . . . JA 3 52.088 -19.367 60.274 1 46.59 ? C17 7HZ 301 V 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #