data_5TSB # _model_server_result.job_id VLgfmpY41TrzGkpjqTFmkw _model_server_result.datetime_utc '2024-11-27 19:12:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tsb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5TSB # _exptl.entry_id 5TSB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.74 _cell.angle_gamma 90 _cell.entry_id 5TSB _cell.length_a 96.076 _cell.length_b 61.596 _cell.length_c 54.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TSB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 96.076 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 75 A LEU 75 1_555 A N MSE 76 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 76 A MSE 76 1_555 A N ALA 77 A ALA 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C ALA 90 A ALA 90 1_555 A N MSE 91 A MSE 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 91 A MSE 91 1_555 A N LEU 92 A LEU 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A C GLY 97 A GLY 97 1_555 A N MSE 98 A MSE 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 98 A MSE 98 1_555 A N MSE 99 A MSE 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C MSE 99 A MSE 99 1_555 A N LEU 100 A LEU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 A C LEU 139 A LEU 139 1_555 A N MSE 140 A MSE 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale9 A C MSE 140 A MSE 140 1_555 A N LEU 141 A LEU 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale10 A C GLY 182 A GLY 182 1_555 A N MSE 183 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 A C MSE 183 A MSE 183 1_555 A N ALA 184 A ALA 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C LEU 238 A LEU 238 1_555 A N MSE 239 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale13 A C MSE 239 A MSE 239 1_555 A N GLU 240 A GLU 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 A C SER 261 A SER 261 1_555 A N MSE 262 A MSE 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale15 A C MSE 262 A MSE 262 1_555 A N GLY 263 A GLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C ALA 268 A ALA 268 1_555 A N MSE 269 A MSE 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C MSE 269 A MSE 269 1_555 A N ILE 270 A ILE 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 A C LEU 294 A LEU 294 1_555 A N MSE 295 A MSE 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale19 A C MSE 295 A MSE 295 1_555 A N ALA 296 A ALA 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale20 A C LEU 300 A LEU 300 1_555 A N MSE 301 A MSE 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale21 A C MSE 301 A MSE 301 1_555 A N MSE 302 A MSE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale22 A C MSE 302 A MSE 302 1_555 A N PHE 303 A PHE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? metalc ? metalc1 A NE2 HIS 177 A HIS 177 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 A OD1 ASN 178 A ASN 178 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc3 A OE2 GLU 181 A GLU 181 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc4 A OE1 GLN 207 A GLN 207 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc5 A OE1 GLU 211 A GLU 211 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc6 A OE2 GLU 211 A GLU 211 1_555 C CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc7 A OE2 GLU 240 A GLU 240 1_555 B CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc8 D CD CD . A CD 403 1_555 F O HOH . A HOH 503 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc9 D CD CD . A CD 403 1_555 F O HOH . A HOH 506 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5TSB _atom_sites.fract_transf_matrix[1][1] 0.010408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 401 1 CD CD . C 2 CD A 1 402 2 CD CD . D 2 CD A 1 403 3 CD CD . E 2 CD A 1 404 4 CD CD . F 3 HOH A 1 501 5 HOH HOH . F 3 HOH A 2 502 6 HOH HOH . F 3 HOH A 3 503 4 HOH HOH . F 3 HOH A 4 504 2 HOH HOH . F 3 HOH A 5 505 1 HOH HOH . F 3 HOH A 6 506 3 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 33.327 _atom_site.Cartn_y 0.574 _atom_site.Cartn_z 4.384 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #