data_5TSV # _model_server_result.job_id VHWA3tpB6PbsuGxAunDKQw _model_server_result.datetime_utc '2024-11-30 04:15:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5TSV # _exptl.entry_id 5TSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.306 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TSV _cell.length_a 151.924 _cell.length_b 151.924 _cell.length_c 69.646 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 14 1_555 B SG CYS 45 B CYS 45 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 45 A CYS 45 1_555 B SG CYS 14 B CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 198 A CYS 198 1_555 A SG CYS 218 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 198 B CYS 198 1_555 B SG CYS 218 B CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H12 O5' _chem_comp.formula_weight 332.306 _chem_comp.id FLU _chem_comp.mon_nstd_flag . _chem_comp.name '2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FLUORESCEIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 FLU sing 83 n n C1 C2 FLU doub 84 n y C1 C13 FLU sing 85 n y O1 HO1 FLU sing 86 n n C2 C3 FLU sing 87 n y C2 H2 FLU sing 88 n n C3 O2 FLU sing 89 n y C3 C11 FLU doub 90 n y O2 C4 FLU sing 91 n y C4 C5 FLU doub 92 n y C4 C9 FLU sing 93 n y C5 C6 FLU sing 94 n y C5 H5 FLU sing 95 n n C6 O3 FLU doub 96 n n C6 C7 FLU sing 97 n y C7 C8 FLU doub 98 n y C7 H7 FLU sing 99 n n C8 C9 FLU sing 100 n y C8 H8 FLU sing 101 n n C9 C10 FLU doub 102 n y C10 C11 FLU sing 103 n y C10 C14 FLU sing 104 n y C11 C12 FLU sing 105 n y C12 C13 FLU doub 106 n y C12 H12 FLU sing 107 n n C13 H13 FLU sing 108 n n C14 C15 FLU doub 109 n y C14 C19 FLU sing 110 n y C15 C16 FLU sing 111 n y C15 H15 FLU sing 112 n n C16 C17 FLU doub 113 n y C16 H16 FLU sing 114 n n C17 C18 FLU sing 115 n y C17 H17 FLU sing 116 n n C18 C19 FLU doub 117 n y C18 H18 FLU sing 118 n n C19 C20 FLU sing 119 n n C20 O4 FLU doub 120 n n C20 O5 FLU sing 121 n n O5 HO5 FLU sing 122 n n # _atom_sites.entry_id 5TSV _atom_sites.fract_transf_matrix[1][1] 0.006582 _atom_sites.fract_transf_matrix[1][2] 0.0038 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id FLU _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 602 _pdbx_nonpoly_scheme.pdb_mon_id FLU _pdbx_nonpoly_scheme.auth_mon_id FLU _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FLU . . . D 3 32.265 -13.214 -11.674 1 53.24 ? C1 FLU 301 B 1 HETATM 2 O O1 FLU . . . D 3 32.991 -12.877 -10.523 1 50.43 ? O1 FLU 301 B 1 HETATM 3 C C2 FLU . . . D 3 30.877 -13.178 -11.655 1 52.24 ? C2 FLU 301 B 1 HETATM 4 C C3 FLU . . . D 3 30.145 -13.518 -12.809 1 55.38 ? C3 FLU 301 B 1 HETATM 5 O O2 FLU . . . D 3 28.758 -13.477 -12.778 1 51.79 ? O2 FLU 301 B 1 HETATM 6 C C4 FLU . . . D 3 28.024 -13.799 -13.91 1 50.4 ? C4 FLU 301 B 1 HETATM 7 C C5 FLU . . . D 3 26.619 -13.745 -13.866 1 47.91 ? C5 FLU 301 B 1 HETATM 8 C C6 FLU . . . D 3 25.873 -14.065 -14.992 1 49.78 ? C6 FLU 301 B 1 HETATM 9 O O3 FLU . . . D 3 24.689 -14.019 -14.957 1 49.14 ? O3 FLU 301 B 1 HETATM 10 C C7 FLU . . . D 3 26.52 -14.441 -16.166 1 53.24 ? C7 FLU 301 B 1 HETATM 11 C C8 FLU . . . D 3 27.908 -14.495 -16.211 1 55.02 ? C8 FLU 301 B 1 HETATM 12 C C9 FLU . . . D 3 28.671 -14.171 -15.071 1 56.76 ? C9 FLU 301 B 1 HETATM 13 C C10 FLU . . . D 3 30.067 -14.221 -15.108 1 65.94 ? C10 FLU 301 B 1 HETATM 14 C C11 FLU . . . D 3 30.801 -13.887 -13.966 1 61.01 ? C11 FLU 301 B 1 HETATM 15 C C12 FLU . . . D 3 32.211 -13.922 -13.979 1 59.71 ? C12 FLU 301 B 1 HETATM 16 C C13 FLU . . . D 3 32.932 -13.586 -12.839 1 57.61 ? C13 FLU 301 B 1 HETATM 17 C C14 FLU . . . D 3 30.724 -14.36 -16.328 1 75.73 ? C14 FLU 301 B 1 HETATM 18 C C15 FLU . . . D 3 31.204 -13.24 -16.989 1 79.27 ? C15 FLU 301 B 1 HETATM 19 C C16 FLU . . . D 3 31.859 -13.373 -18.203 1 78.45 ? C16 FLU 301 B 1 HETATM 20 C C17 FLU . . . D 3 32.037 -14.627 -18.76 1 78.3 ? C17 FLU 301 B 1 HETATM 21 C C18 FLU . . . D 3 31.558 -15.749 -18.102 1 79.81 ? C18 FLU 301 B 1 HETATM 22 C C19 FLU . . . D 3 30.904 -15.617 -16.887 1 77.58 ? C19 FLU 301 B 1 HETATM 23 C C20 FLU . . . D 3 30.376 -16.858 -16.167 1 73.37 ? C20 FLU 301 B 1 HETATM 24 O O4 FLU . . . D 3 29.242 -17.319 -16.461 1 69.07 ? O4 FLU 301 B 1 HETATM 25 O O5 FLU . . . D 3 31.074 -17.42 -15.281 1 72.9 ? O5 FLU 301 B 1 HETATM 26 H HO1 FLU . . . D 3 33.057 -13.558 -10.019 1 60.52 ? HO1 FLU 301 B 1 HETATM 27 H H2 FLU . . . D 3 30.429 -12.93 -10.879 1 62.69 ? H2 FLU 301 B 1 HETATM 28 H H5 FLU . . . D 3 26.188 -13.493 -13.08 1 57.49 ? H5 FLU 301 B 1 HETATM 29 H H7 FLU . . . D 3 26.023 -14.655 -16.921 1 63.89 ? H7 FLU 301 B 1 HETATM 30 H H8 FLU . . . D 3 28.336 -14.746 -16.998 1 66.02 ? H8 FLU 301 B 1 HETATM 31 H H12 FLU . . . D 3 32.661 -14.17 -14.755 1 71.65 ? H12 FLU 301 B 1 HETATM 32 H H13 FLU . . . D 3 33.861 -13.612 -12.853 1 69.13 ? H13 FLU 301 B 1 HETATM 33 H H15 FLU . . . D 3 31.086 -12.396 -16.617 1 95.12 ? H15 FLU 301 B 1 HETATM 34 H H16 FLU . . . D 3 32.18 -12.619 -18.643 1 94.14 ? H16 FLU 301 B 1 HETATM 35 H H17 FLU . . . D 3 32.476 -14.717 -19.575 1 93.96 ? H17 FLU 301 B 1 HETATM 36 H H18 FLU . . . D 3 31.677 -16.592 -18.476 1 95.77 ? H18 FLU 301 B 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #