data_5TT6 # _model_server_result.job_id MQozMdn9ULjJRf6VWNjTcA _model_server_result.datetime_utc '2024-12-23 02:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5TT6 # _exptl.entry_id 5TT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.36 _cell.angle_gamma 90 _cell.entry_id 5TT6 _cell.length_a 107.293 _cell.length_b 39.96 _cell.length_c 108.268 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 334 A CYS 314 1_555 A SG CYS 334 A CYS 314 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc1 A OD2 ASP 292 A ASP 272 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 B MG MG . A MG 401 1_555 D O2G ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? metalc ? metalc3 B MG MG . A MG 401 1_555 D O1B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 B MG MG . A MG 401 1_555 E O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc5 B MG MG . A MG 401 1_555 E O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc7 C MG MG . A MG 402 1_555 D O2A ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc8 C MG MG . A MG 402 1_555 E O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc9 C MG MG . A MG 402 1_555 E O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc10 C MG MG . A MG 402 1_555 E O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc11 C MG MG . A MG 402 1_555 E O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc12 C MG MG . A MG 402 1_555 E O HOH . A HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5TT6 _atom_sites.fract_transf_matrix[1][1] 0.00932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004618 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 534 MG MG . C 2 MG A 1 402 536 MG MG . D 3 ATP A 1 403 535 ATP ATP . E 4 HOH A 1 501 14 HOH HOH . E 4 HOH A 2 502 85 HOH HOH . E 4 HOH A 3 503 48 HOH HOH . E 4 HOH A 4 504 65 HOH HOH . E 4 HOH A 5 505 36 HOH HOH . E 4 HOH A 6 506 29 HOH HOH . E 4 HOH A 7 507 38 HOH HOH . E 4 HOH A 8 508 47 HOH HOH . E 4 HOH A 9 509 12 HOH HOH . E 4 HOH A 10 510 70 HOH HOH . E 4 HOH A 11 511 18 HOH HOH . E 4 HOH A 12 512 92 HOH HOH . E 4 HOH A 13 513 72 HOH HOH . E 4 HOH A 14 514 32 HOH HOH . E 4 HOH A 15 515 39 HOH HOH . E 4 HOH A 16 516 22 HOH HOH . E 4 HOH A 17 517 87 HOH HOH . E 4 HOH A 18 518 42 HOH HOH . E 4 HOH A 19 519 33 HOH HOH . E 4 HOH A 20 520 24 HOH HOH . E 4 HOH A 21 521 26 HOH HOH . E 4 HOH A 22 522 63 HOH HOH . E 4 HOH A 23 523 37 HOH HOH . E 4 HOH A 24 524 6 HOH HOH . E 4 HOH A 25 525 7 HOH HOH . E 4 HOH A 26 526 81 HOH HOH . E 4 HOH A 27 527 5 HOH HOH . E 4 HOH A 28 528 19 HOH HOH . E 4 HOH A 29 529 10 HOH HOH . E 4 HOH A 30 530 83 HOH HOH . E 4 HOH A 31 531 82 HOH HOH . E 4 HOH A 32 532 13 HOH HOH . E 4 HOH A 33 533 23 HOH HOH . E 4 HOH A 34 534 49 HOH HOH . E 4 HOH A 35 535 57 HOH HOH . E 4 HOH A 36 536 1 HOH HOH . E 4 HOH A 37 537 2 HOH HOH . E 4 HOH A 38 538 35 HOH HOH . E 4 HOH A 39 539 30 HOH HOH . E 4 HOH A 40 540 11 HOH HOH . E 4 HOH A 41 541 67 HOH HOH . E 4 HOH A 42 542 86 HOH HOH . E 4 HOH A 43 543 4 HOH HOH . E 4 HOH A 44 544 21 HOH HOH . E 4 HOH A 45 545 77 HOH HOH . E 4 HOH A 46 546 3 HOH HOH . E 4 HOH A 47 547 16 HOH HOH . E 4 HOH A 48 548 51 HOH HOH . E 4 HOH A 49 549 61 HOH HOH . E 4 HOH A 50 550 64 HOH HOH . E 4 HOH A 51 551 34 HOH HOH . E 4 HOH A 52 552 44 HOH HOH . E 4 HOH A 53 553 53 HOH HOH . E 4 HOH A 54 554 91 HOH HOH . E 4 HOH A 55 555 25 HOH HOH . E 4 HOH A 56 556 27 HOH HOH . E 4 HOH A 57 557 58 HOH HOH . E 4 HOH A 58 558 84 HOH HOH . E 4 HOH A 59 559 41 HOH HOH . E 4 HOH A 60 560 9 HOH HOH . E 4 HOH A 61 561 56 HOH HOH . E 4 HOH A 62 562 69 HOH HOH . E 4 HOH A 63 563 73 HOH HOH . E 4 HOH A 64 564 80 HOH HOH . E 4 HOH A 65 565 28 HOH HOH . E 4 HOH A 66 566 59 HOH HOH . E 4 HOH A 67 567 31 HOH HOH . E 4 HOH A 68 568 43 HOH HOH . E 4 HOH A 69 569 8 HOH HOH . E 4 HOH A 70 570 75 HOH HOH . E 4 HOH A 71 571 55 HOH HOH . E 4 HOH A 72 572 54 HOH HOH . E 4 HOH A 73 573 46 HOH HOH . E 4 HOH A 74 574 74 HOH HOH . E 4 HOH A 75 575 66 HOH HOH . E 4 HOH A 76 576 93 HOH HOH . E 4 HOH A 77 577 90 HOH HOH . E 4 HOH A 78 578 20 HOH HOH . E 4 HOH A 79 579 79 HOH HOH . E 4 HOH A 80 580 71 HOH HOH . E 4 HOH A 81 581 17 HOH HOH . E 4 HOH A 82 582 76 HOH HOH . E 4 HOH A 83 583 50 HOH HOH . E 4 HOH A 84 584 60 HOH HOH . E 4 HOH A 85 585 45 HOH HOH . E 4 HOH A 86 586 52 HOH HOH . E 4 HOH A 87 587 40 HOH HOH . E 4 HOH A 88 588 68 HOH HOH . E 4 HOH A 89 589 89 HOH HOH . E 4 HOH A 90 590 62 HOH HOH . E 4 HOH A 91 591 78 HOH HOH . E 4 HOH A 92 592 88 HOH HOH . E 4 HOH A 93 593 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 19.497 14.403 24.983 1 36.71 ? PG ATP 403 A 1 HETATM 2 O O1G ATP . . . D 3 18.763 14.359 23.671 1 33.3 ? O1G ATP 403 A 1 HETATM 3 O O2G ATP . . . D 3 20.986 14.197 24.854 1 28.33 ? O2G ATP 403 A 1 HETATM 4 O O3G ATP . . . D 3 19.175 15.599 25.83 1 37.14 ? O3G ATP 403 A 1 HETATM 5 P PB ATP . . . D 3 19.751 12.112 26.699 1 29.15 ? PB ATP 403 A 1 HETATM 6 O O1B ATP . . . D 3 21.073 11.698 26.094 1 30.16 ? O1B ATP 403 A 1 HETATM 7 O O2B ATP . . . D 3 18.844 10.994 27.148 1 31.02 ? O2B ATP 403 A 1 HETATM 8 O O3B ATP . . . D 3 18.889 13.082 25.752 1 31.77 ? O3B ATP 403 A 1 HETATM 9 P PA ATP . . . D 3 21.074 12.913 29.163 1 33.02 ? PA ATP 403 A 1 HETATM 10 O O1A ATP . . . D 3 22.538 13.058 28.851 1 41.33 ? O1A ATP 403 A 1 HETATM 11 O O2A ATP . . . D 3 20.65 11.664 29.903 1 30.78 ? O2A ATP 403 A 1 HETATM 12 O O3A ATP . . . D 3 20.1 13.14 27.892 1 26.46 ? O3A ATP 403 A 1 HETATM 13 O O5' ATP . . . D 3 20.611 14.235 29.975 1 28.23 ? O5' ATP 403 A 1 HETATM 14 C C5' ATP . . . D 3 19.246 14.66 30.029 1 35.76 ? C5' ATP 403 A 1 HETATM 15 C C4' ATP . . . D 3 18.529 13.728 31.019 1 34.12 ? C4' ATP 403 A 1 HETATM 16 O O4' ATP . . . D 3 19.248 13.564 32.244 1 26.83 ? O4' ATP 403 A 1 HETATM 17 C C3' ATP . . . D 3 17.146 14.17 31.481 1 34.91 ? C3' ATP 403 A 1 HETATM 18 O O3' ATP . . . D 3 16.134 13.981 30.477 1 32.07 ? O3' ATP 403 A 1 HETATM 19 C C2' ATP . . . D 3 16.925 13.389 32.782 1 31.63 ? C2' ATP 403 A 1 HETATM 20 O O2' ATP . . . D 3 16.218 12.165 32.548 1 29.27 ? O2' ATP 403 A 1 HETATM 21 C C1' ATP . . . D 3 18.329 12.984 33.214 1 35.74 ? C1' ATP 403 A 1 HETATM 22 N N9 ATP . . . D 3 18.734 13.448 34.56 1 32.92 ? N9 ATP 403 A 1 HETATM 23 C C8 ATP . . . D 3 19.41 12.721 35.477 1 31.77 ? C8 ATP 403 A 1 HETATM 24 N N7 ATP . . . D 3 19.664 13.476 36.588 1 35.05 ? N7 ATP 403 A 1 HETATM 25 C C5 ATP . . . D 3 19.149 14.701 36.367 1 34.99 ? C5 ATP 403 A 1 HETATM 26 C C6 ATP . . . D 3 19.046 15.972 37.126 1 32 ? C6 ATP 403 A 1 HETATM 27 N N6 ATP . . . D 3 19.577 16.068 38.366 1 32.84 ? N6 ATP 403 A 1 HETATM 28 N N1 ATP . . . D 3 18.434 17.017 36.53 1 29.09 ? N1 ATP 403 A 1 HETATM 29 C C2 ATP . . . D 3 17.895 16.937 35.302 1 33.15 ? C2 ATP 403 A 1 HETATM 30 N N3 ATP . . . D 3 17.951 15.804 34.564 1 32.35 ? N3 ATP 403 A 1 HETATM 31 C C4 ATP . . . D 3 18.541 14.679 35.037 1 28.53 ? C4 ATP 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #