data_5TUD # _model_server_result.job_id PcOIrkcT9wDiY9SyWtd9Aw _model_server_result.datetime_utc '2024-11-23 03:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1201}' # _entry.id 5TUD # _exptl.entry_id 5TUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 581.661 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ergotamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.37 _cell.angle_gamma 90 _cell.entry_id 5TUD _cell.length_a 71.29 _cell.length_b 118.86 _cell.length_c 145.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G 1 1 D,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 119 A CYS 128 1_555 A SG CYS 198 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 382 A CYS 350 1_555 A SG CYS 385 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 133 B CYS 133 1_555 B SG CYS 193 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 154 C CYS 154 1_555 C SG CYS 210 C CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 D SG CYS 119 D CYS 128 1_555 D SG CYS 198 D CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 D SG CYS 382 D CYS 350 1_555 D SG CYS 385 D CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 E SG CYS 23 E CYS 23 1_555 E SG CYS 87 E CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 E SG CYS 133 E CYS 133 1_555 E SG CYS 193 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 F SG CYS 22 F CYS 22 1_555 F SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 F SG CYS 154 F CYS 154 1_555 F SG CYS 210 F CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C33 H35 N5 O5' _chem_comp.formula_weight 581.661 _chem_comp.id ERM _chem_comp.mon_nstd_flag . _chem_comp.name Ergotamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 ERM sing 83 n n C23 C24 ERM sing 84 n n C26 C17 ERM sing 85 n n C22 C21 ERM sing 86 n n O2 C17 ERM sing 87 n n O2 C25 ERM sing 88 n n C24 C25 ERM sing 89 n n C24 N5 ERM sing 90 n n C21 N5 ERM sing 91 n n C17 N3 ERM sing 92 n n C17 C18 ERM sing 93 n n C25 O5 ERM sing 94 n n C25 N4 ERM sing 95 n n N3 C16 ERM sing 96 n n N5 C20 ERM sing 97 n n C5 N2 ERM sing 98 n n C5 C6 ERM sing 99 n n C15 N2 ERM sing 100 n n C18 N4 ERM sing 101 n n C18 O3 ERM doub 102 n n C16 C6 ERM sing 103 n n C16 O1 ERM doub 104 n n N4 C19 ERM sing 105 n n N2 C4 ERM sing 106 n n C6 C7 ERM sing 107 n n C20 O4 ERM doub 108 n n C20 C19 ERM sing 109 n n C19 C27 ERM sing 110 n n C7 C8 ERM doub 111 n n C4 C3 ERM sing 112 n n C4 C8 ERM sing 113 n n C3 C2 ERM sing 114 n n C8 C9 ERM sing 115 n n C27 C28 ERM sing 116 n n C2 C1 ERM doub 117 n y C2 C14 ERM sing 118 n y C28 C29 ERM doub 119 n y C28 C33 ERM sing 120 n y C9 C14 ERM doub 121 n y C9 C10 ERM sing 122 n y C29 C30 ERM sing 123 n y C33 C32 ERM doub 124 n y C1 N1 ERM sing 125 n y C14 C13 ERM sing 126 n y C30 C31 ERM doub 127 n y C10 C11 ERM doub 128 n y C32 C31 ERM sing 129 n y N1 C13 ERM sing 130 n y C13 C12 ERM doub 131 n y C11 C12 ERM sing 132 n y C1 H1 ERM sing 133 n n N1 H2 ERM sing 134 n n C10 H3 ERM sing 135 n n C11 H4 ERM sing 136 n n C12 H5 ERM sing 137 n n C15 H6 ERM sing 138 n n C15 H7 ERM sing 139 n n C15 H8 ERM sing 140 n n C19 H9 ERM sing 141 n n C21 H11 ERM sing 142 n n C21 H12 ERM sing 143 n n C22 H13 ERM sing 144 n n C22 H14 ERM sing 145 n n C23 H15 ERM sing 146 n n C23 H16 ERM sing 147 n n C24 H17 ERM sing 148 n n C26 H18 ERM sing 149 n n C26 H19 ERM sing 150 n n C26 H20 ERM sing 151 n n C27 H21 ERM sing 152 n n C27 H22 ERM sing 153 n n C29 H23 ERM sing 154 n n C3 H24 ERM sing 155 n n C3 H25 ERM sing 156 n n N3 H26 ERM sing 157 n n C30 H27 ERM sing 158 n n C31 H28 ERM sing 159 n n C32 H29 ERM sing 160 n n C33 H30 ERM sing 161 n n C4 H31 ERM sing 162 n n C5 H32 ERM sing 163 n n C5 H33 ERM sing 164 n n O5 H34 ERM sing 165 n n C6 H35 ERM sing 166 n n C7 H36 ERM sing 167 n n # _atom_sites.entry_id 5TUD _atom_sites.fract_transf_matrix[1][1] 0.014027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000091 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ERM A 1 2001 2001 ERM ERM . H 4 ERM D 1 1201 2002 ERM ERM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERM . . . H 4 19.005 -68.262 77.835 1 105.47 ? C1 ERM 1201 D 1 HETATM 2 N N1 ERM . . . H 4 20.273 -68.067 78.319 1 106.39 ? N1 ERM 1201 D 1 HETATM 3 O O1 ERM . . . H 4 15.029 -66.609 84.547 1 106.53 ? O1 ERM 1201 D 1 HETATM 4 C C10 ERM . . . H 4 19.36 -67.48 82.285 1 101.6 ? C10 ERM 1201 D 1 HETATM 5 C C11 ERM . . . H 4 20.715 -67.428 81.955 1 100.81 ? C11 ERM 1201 D 1 HETATM 6 C C12 ERM . . . H 4 21.155 -67.587 80.644 1 103.43 ? C12 ERM 1201 D 1 HETATM 7 C C13 ERM . . . H 4 20.199 -67.823 79.665 1 107.3 ? C13 ERM 1201 D 1 HETATM 8 C C14 ERM . . . H 4 18.847 -67.879 80.003 1 107.07 ? C14 ERM 1201 D 1 HETATM 9 C C15 ERM . . . H 4 13.809 -66.995 79.447 1 103.17 ? C15 ERM 1201 D 1 HETATM 10 C C16 ERM . . . H 4 14.614 -67.722 84.215 1 105.13 ? C16 ERM 1201 D 1 HETATM 11 C C17 ERM . . . H 4 13.562 -68.166 86.395 1 94.61 ? C17 ERM 1201 D 1 HETATM 12 C C18 ERM . . . H 4 14.783 -67.748 87.22 1 95.69 ? C18 ERM 1201 D 1 HETATM 13 C C19 ERM . . . H 4 15.51 -65.73 88.415 1 93.11 ? C19 ERM 1201 D 1 HETATM 14 N N2 ERM . . . H 4 14.651 -67.709 80.419 1 103.45 ? N2 ERM 1201 D 1 HETATM 15 C C2 ERM . . . H 4 18.095 -68.15 78.846 1 105.77 ? C2 ERM 1201 D 1 HETATM 16 O O2 ERM . . . H 4 12.723 -67 86.428 1 91.05 ? O2 ERM 1201 D 1 HETATM 17 C C20 ERM . . . H 4 14.769 -64.833 89.375 1 93.46 ? C20 ERM 1201 D 1 HETATM 18 C C21 ERM . . . H 4 12.589 -64.055 90.217 1 87.28 ? C21 ERM 1201 D 1 HETATM 19 C C22 ERM . . . H 4 11.435 -63.603 89.363 1 85.71 ? C22 ERM 1201 D 1 HETATM 20 C C23 ERM . . . H 4 11.421 -64.472 88.122 1 85.76 ? C23 ERM 1201 D 1 HETATM 21 C C24 ERM . . . H 4 12.544 -65.495 88.323 1 89.2 ? C24 ERM 1201 D 1 HETATM 22 C C25 ERM . . . H 4 13.346 -65.907 87.112 1 92 ? C25 ERM 1201 D 1 HETATM 23 C C26 ERM . . . H 4 12.848 -69.33 87.049 1 93.18 ? C26 ERM 1201 D 1 HETATM 24 C C27 ERM . . . H 4 16.642 -64.996 87.689 1 94.67 ? C27 ERM 1201 D 1 HETATM 25 C C28 ERM . . . H 4 17.878 -64.965 88.548 1 96.9 ? C28 ERM 1201 D 1 HETATM 26 C C29 ERM . . . H 4 18.435 -66.137 89.048 1 97.54 ? C29 ERM 1201 D 1 HETATM 27 C C3 ERM . . . H 4 16.598 -68.218 78.957 1 105.98 ? C3 ERM 1201 D 1 HETATM 28 N N3 ERM . . . H 4 13.906 -68.52 85.035 1 100.81 ? N3 ERM 1201 D 1 HETATM 29 O O3 ERM . . . H 4 15.754 -68.437 87.469 1 97.09 ? O3 ERM 1201 D 1 HETATM 30 C C30 ERM . . . H 4 19.678 -66.124 89.664 1 97.02 ? C30 ERM 1201 D 1 HETATM 31 C C31 ERM . . . H 4 20.375 -64.938 89.795 1 96.66 ? C31 ERM 1201 D 1 HETATM 32 C C32 ERM . . . H 4 19.819 -63.764 89.325 1 96.95 ? C32 ERM 1201 D 1 HETATM 33 C C33 ERM . . . H 4 18.573 -63.776 88.723 1 97.72 ? C33 ERM 1201 D 1 HETATM 34 C C4 ERM . . . H 4 16.106 -67.462 80.208 1 105.64 ? C4 ERM 1201 D 1 HETATM 35 N N4 ERM . . . H 4 14.599 -66.479 87.576 1 93.93 ? N4 ERM 1201 D 1 HETATM 36 O O4 ERM . . . H 4 15.394 -64.179 90.189 1 96.09 ? O4 ERM 1201 D 1 HETATM 37 C C5 ERM . . . H 4 14.215 -67.355 81.774 1 103.51 ? C5 ERM 1201 D 1 HETATM 38 N N5 ERM . . . H 4 13.417 -64.823 89.296 1 90.4 ? N5 ERM 1201 D 1 HETATM 39 O O5 ERM . . . H 4 13.526 -64.817 86.281 1 93.69 ? O5 ERM 1201 D 1 HETATM 40 C C6 ERM . . . H 4 14.859 -68.28 82.807 1 104.43 ? C6 ERM 1201 D 1 HETATM 41 C C7 ERM . . . H 4 16.347 -68.281 82.584 1 104.59 ? C7 ERM 1201 D 1 HETATM 42 C C8 ERM . . . H 4 16.919 -67.827 81.466 1 105.61 ? C8 ERM 1201 D 1 HETATM 43 C C9 ERM . . . H 4 18.39 -67.708 81.309 1 104.62 ? C9 ERM 1201 D 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #