data_5TUW # _model_server_result.job_id eGBV-OGU6TdpNn2qRTsNKQ _model_server_result.datetime_utc '2024-11-25 02:04:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tuw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 5TUW # _exptl.entry_id 5TUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.79 _cell.angle_beta 89.91 _cell.angle_gamma 60.04 _cell.entry_id 5TUW _cell.length_a 82.947 _cell.length_b 82.914 _cell.length_c 87.438 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 K N N ? 2 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 226 n n C1 C2 GOL sing 227 n n C1 H11 GOL sing 228 n n C1 H12 GOL sing 229 n n O1 HO1 GOL sing 230 n n C2 O2 GOL sing 231 n n C2 C3 GOL sing 232 n n C2 H2 GOL sing 233 n n O2 HO2 GOL sing 234 n n C3 O3 GOL sing 235 n n C3 H31 GOL sing 236 n n C3 H32 GOL sing 237 n n O3 HO3 GOL sing 238 n n # _atom_sites.entry_id 5TUW _atom_sites.fract_transf_matrix[1][1] 0.012056 _atom_sites.fract_transf_matrix[1][2] -0.00695 _atom_sites.fract_transf_matrix[1][3] 0.000004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013921 _atom_sites.fract_transf_matrix[2][3] -0.000047 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 401 2 GOL GOL . H 3 EQ3 A 1 402 1 EQ3 HEQ . I 3 EQ3 B 1 401 2 EQ3 HEQ . J 2 GOL C 1 401 1 GOL GOL . K 2 GOL C 1 402 3 GOL GOL . L 3 EQ3 C 1 403 3 EQ3 HEQ . M 3 EQ3 D 1 401 4 EQ3 HEQ . N 2 GOL E 1 401 4 GOL GOL . O 3 EQ3 E 1 402 5 EQ3 HEQ . P 3 EQ3 F 1 401 6 EQ3 HEQ . Q 4 HOH A 1 501 290 HOH HOH . Q 4 HOH A 2 502 326 HOH HOH . Q 4 HOH A 3 503 358 HOH HOH . Q 4 HOH A 4 504 193 HOH HOH . Q 4 HOH A 5 505 279 HOH HOH . Q 4 HOH A 6 506 89 HOH HOH . Q 4 HOH A 7 507 88 HOH HOH . Q 4 HOH A 8 508 328 HOH HOH . Q 4 HOH A 9 509 137 HOH HOH . Q 4 HOH A 10 510 319 HOH HOH . Q 4 HOH A 11 511 17 HOH HOH . Q 4 HOH A 12 512 191 HOH HOH . Q 4 HOH A 13 513 109 HOH HOH . Q 4 HOH A 14 514 288 HOH HOH . Q 4 HOH A 15 515 4 HOH HOH . Q 4 HOH A 16 516 40 HOH HOH . Q 4 HOH A 17 517 42 HOH HOH . Q 4 HOH A 18 518 125 HOH HOH . Q 4 HOH A 19 519 317 HOH HOH . Q 4 HOH A 20 520 320 HOH HOH . Q 4 HOH A 21 521 21 HOH HOH . Q 4 HOH A 22 522 83 HOH HOH . Q 4 HOH A 23 523 38 HOH HOH . Q 4 HOH A 24 524 94 HOH HOH . Q 4 HOH A 25 525 165 HOH HOH . Q 4 HOH A 26 526 29 HOH HOH . Q 4 HOH A 27 527 106 HOH HOH . Q 4 HOH A 28 528 241 HOH HOH . Q 4 HOH A 29 529 192 HOH HOH . Q 4 HOH A 30 530 327 HOH HOH . Q 4 HOH A 31 531 353 HOH HOH . Q 4 HOH A 32 532 217 HOH HOH . Q 4 HOH A 33 533 258 HOH HOH . Q 4 HOH A 34 534 76 HOH HOH . Q 4 HOH A 35 535 138 HOH HOH . Q 4 HOH A 36 536 126 HOH HOH . Q 4 HOH A 37 537 201 HOH HOH . Q 4 HOH A 38 538 107 HOH HOH . Q 4 HOH A 39 539 256 HOH HOH . Q 4 HOH A 40 540 278 HOH HOH . Q 4 HOH A 41 541 65 HOH HOH . Q 4 HOH A 42 542 234 HOH HOH . Q 4 HOH A 43 543 51 HOH HOH . Q 4 HOH A 44 544 289 HOH HOH . Q 4 HOH A 45 545 235 HOH HOH . Q 4 HOH A 46 546 321 HOH HOH . Q 4 HOH A 47 547 329 HOH HOH . Q 4 HOH A 48 548 287 HOH HOH . R 4 HOH B 1 501 318 HOH HOH . R 4 HOH B 2 502 301 HOH HOH . R 4 HOH B 3 503 365 HOH HOH . R 4 HOH B 4 504 302 HOH HOH . R 4 HOH B 5 505 360 HOH HOH . R 4 HOH B 6 506 117 HOH HOH . R 4 HOH B 7 507 43 HOH HOH . R 4 HOH B 8 508 364 HOH HOH . R 4 HOH B 9 509 339 HOH HOH . R 4 HOH B 10 510 363 HOH HOH . R 4 HOH B 11 511 22 HOH HOH . R 4 HOH B 12 512 316 HOH HOH . R 4 HOH B 13 513 66 HOH HOH . R 4 HOH B 14 514 354 HOH HOH . R 4 HOH B 15 515 55 HOH HOH . R 4 HOH B 16 516 57 HOH HOH . R 4 HOH B 17 517 139 HOH HOH . R 4 HOH B 18 518 81 HOH HOH . R 4 HOH B 19 519 7 HOH HOH . R 4 HOH B 20 520 103 HOH HOH . R 4 HOH B 21 521 356 HOH HOH . R 4 HOH B 22 522 168 HOH HOH . R 4 HOH B 23 523 251 HOH HOH . R 4 HOH B 24 524 99 HOH HOH . R 4 HOH B 25 525 20 HOH HOH . R 4 HOH B 26 526 359 HOH HOH . R 4 HOH B 27 527 355 HOH HOH . R 4 HOH B 28 528 47 HOH HOH . R 4 HOH B 29 529 146 HOH HOH . R 4 HOH B 30 530 74 HOH HOH . R 4 HOH B 31 531 357 HOH HOH . R 4 HOH B 32 532 257 HOH HOH . R 4 HOH B 33 533 272 HOH HOH . R 4 HOH B 34 534 141 HOH HOH . R 4 HOH B 35 535 49 HOH HOH . R 4 HOH B 36 536 286 HOH HOH . R 4 HOH B 37 537 184 HOH HOH . R 4 HOH B 38 538 60 HOH HOH . R 4 HOH B 39 539 77 HOH HOH . S 4 HOH C 1 501 85 HOH HOH . S 4 HOH C 2 502 361 HOH HOH . S 4 HOH C 3 503 69 HOH HOH . S 4 HOH C 4 504 335 HOH HOH . S 4 HOH C 5 505 37 HOH HOH . S 4 HOH C 6 506 28 HOH HOH . S 4 HOH C 7 507 183 HOH HOH . S 4 HOH C 8 508 218 HOH HOH . S 4 HOH C 9 509 362 HOH HOH . S 4 HOH C 10 510 331 HOH HOH . S 4 HOH C 11 511 149 HOH HOH . S 4 HOH C 12 512 291 HOH HOH . S 4 HOH C 13 513 95 HOH HOH . S 4 HOH C 14 514 67 HOH HOH . S 4 HOH C 15 515 206 HOH HOH . S 4 HOH C 16 516 182 HOH HOH . S 4 HOH C 17 517 119 HOH HOH . S 4 HOH C 18 518 163 HOH HOH . S 4 HOH C 19 519 140 HOH HOH . S 4 HOH C 20 520 188 HOH HOH . S 4 HOH C 21 521 24 HOH HOH . S 4 HOH C 22 522 135 HOH HOH . S 4 HOH C 23 523 32 HOH HOH . S 4 HOH C 24 524 61 HOH HOH . S 4 HOH C 25 525 226 HOH HOH . S 4 HOH C 26 526 177 HOH HOH . S 4 HOH C 27 527 231 HOH HOH . S 4 HOH C 28 528 41 HOH HOH . S 4 HOH C 29 529 283 HOH HOH . S 4 HOH C 30 530 271 HOH HOH . S 4 HOH C 31 531 87 HOH HOH . S 4 HOH C 32 532 211 HOH HOH . S 4 HOH C 33 533 115 HOH HOH . S 4 HOH C 34 534 266 HOH HOH . S 4 HOH C 35 535 160 HOH HOH . S 4 HOH C 36 536 179 HOH HOH . S 4 HOH C 37 537 1 HOH HOH . S 4 HOH C 38 538 70 HOH HOH . S 4 HOH C 39 539 172 HOH HOH . S 4 HOH C 40 540 333 HOH HOH . S 4 HOH C 41 541 148 HOH HOH . S 4 HOH C 42 542 118 HOH HOH . T 4 HOH D 1 501 338 HOH HOH . T 4 HOH D 2 502 334 HOH HOH . T 4 HOH D 3 503 101 HOH HOH . T 4 HOH D 4 504 62 HOH HOH . T 4 HOH D 5 505 90 HOH HOH . T 4 HOH D 6 506 80 HOH HOH . T 4 HOH D 7 507 232 HOH HOH . T 4 HOH D 8 508 93 HOH HOH . T 4 HOH D 9 509 322 HOH HOH . T 4 HOH D 10 510 26 HOH HOH . T 4 HOH D 11 511 225 HOH HOH . T 4 HOH D 12 512 11 HOH HOH . T 4 HOH D 13 513 186 HOH HOH . T 4 HOH D 14 514 143 HOH HOH . T 4 HOH D 15 515 336 HOH HOH . T 4 HOH D 16 516 171 HOH HOH . T 4 HOH D 17 517 324 HOH HOH . T 4 HOH D 18 518 214 HOH HOH . T 4 HOH D 19 519 157 HOH HOH . T 4 HOH D 20 520 332 HOH HOH . T 4 HOH D 21 521 45 HOH HOH . T 4 HOH D 22 522 30 HOH HOH . T 4 HOH D 23 523 227 HOH HOH . T 4 HOH D 24 524 147 HOH HOH . T 4 HOH D 25 525 46 HOH HOH . T 4 HOH D 26 526 323 HOH HOH . T 4 HOH D 27 527 209 HOH HOH . T 4 HOH D 28 528 325 HOH HOH . T 4 HOH D 29 529 249 HOH HOH . T 4 HOH D 30 530 27 HOH HOH . T 4 HOH D 31 531 133 HOH HOH . T 4 HOH D 32 532 164 HOH HOH . T 4 HOH D 33 533 280 HOH HOH . T 4 HOH D 34 534 247 HOH HOH . T 4 HOH D 35 535 6 HOH HOH . T 4 HOH D 36 536 53 HOH HOH . T 4 HOH D 37 537 203 HOH HOH . T 4 HOH D 38 538 237 HOH HOH . U 4 HOH E 1 501 72 HOH HOH . U 4 HOH E 2 502 312 HOH HOH . U 4 HOH E 3 503 294 HOH HOH . U 4 HOH E 4 504 297 HOH HOH . U 4 HOH E 5 505 295 HOH HOH . U 4 HOH E 6 506 128 HOH HOH . U 4 HOH E 7 507 129 HOH HOH . U 4 HOH E 8 508 296 HOH HOH . U 4 HOH E 9 509 292 HOH HOH . U 4 HOH E 10 510 92 HOH HOH . U 4 HOH E 11 511 236 HOH HOH . U 4 HOH E 12 512 36 HOH HOH . U 4 HOH E 13 513 114 HOH HOH . U 4 HOH E 14 514 313 HOH HOH . U 4 HOH E 15 515 195 HOH HOH . U 4 HOH E 16 516 13 HOH HOH . U 4 HOH E 17 517 134 HOH HOH . U 4 HOH E 18 518 310 HOH HOH . U 4 HOH E 19 519 299 HOH HOH . U 4 HOH E 20 520 199 HOH HOH . U 4 HOH E 21 521 230 HOH HOH . U 4 HOH E 22 522 50 HOH HOH . U 4 HOH E 23 523 116 HOH HOH . U 4 HOH E 24 524 31 HOH HOH . U 4 HOH E 25 525 244 HOH HOH . U 4 HOH E 26 526 121 HOH HOH . U 4 HOH E 27 527 39 HOH HOH . U 4 HOH E 28 528 352 HOH HOH . U 4 HOH E 29 529 136 HOH HOH . U 4 HOH E 30 530 14 HOH HOH . U 4 HOH E 31 531 314 HOH HOH . U 4 HOH E 32 532 293 HOH HOH . U 4 HOH E 33 533 194 HOH HOH . U 4 HOH E 34 534 222 HOH HOH . U 4 HOH E 35 535 64 HOH HOH . U 4 HOH E 36 536 112 HOH HOH . U 4 HOH E 37 537 111 HOH HOH . U 4 HOH E 38 538 298 HOH HOH . U 4 HOH E 39 539 315 HOH HOH . U 4 HOH E 40 540 16 HOH HOH . U 4 HOH E 41 541 311 HOH HOH . U 4 HOH E 42 542 255 HOH HOH . U 4 HOH E 43 543 127 HOH HOH . U 4 HOH E 44 544 221 HOH HOH . U 4 HOH E 45 545 86 HOH HOH . U 4 HOH E 46 546 261 HOH HOH . U 4 HOH E 47 547 44 HOH HOH . U 4 HOH E 48 548 250 HOH HOH . U 4 HOH E 49 549 307 HOH HOH . V 4 HOH F 1 501 350 HOH HOH . V 4 HOH F 2 502 305 HOH HOH . V 4 HOH F 3 503 341 HOH HOH . V 4 HOH F 4 504 348 HOH HOH . V 4 HOH F 5 505 345 HOH HOH . V 4 HOH F 6 506 306 HOH HOH . V 4 HOH F 7 507 169 HOH HOH . V 4 HOH F 8 508 25 HOH HOH . V 4 HOH F 9 509 281 HOH HOH . V 4 HOH F 10 510 15 HOH HOH . V 4 HOH F 11 511 340 HOH HOH . V 4 HOH F 12 512 343 HOH HOH . V 4 HOH F 13 513 10 HOH HOH . V 4 HOH F 14 514 18 HOH HOH . V 4 HOH F 15 515 342 HOH HOH . V 4 HOH F 16 516 309 HOH HOH . V 4 HOH F 17 517 190 HOH HOH . V 4 HOH F 18 518 344 HOH HOH . V 4 HOH F 19 519 96 HOH HOH . V 4 HOH F 20 520 19 HOH HOH . V 4 HOH F 21 521 33 HOH HOH . V 4 HOH F 22 522 185 HOH HOH . V 4 HOH F 23 523 9 HOH HOH . V 4 HOH F 24 524 71 HOH HOH . V 4 HOH F 25 525 104 HOH HOH . V 4 HOH F 26 526 223 HOH HOH . V 4 HOH F 27 527 132 HOH HOH . V 4 HOH F 28 528 351 HOH HOH . V 4 HOH F 29 529 100 HOH HOH . V 4 HOH F 30 530 150 HOH HOH . V 4 HOH F 31 531 213 HOH HOH . V 4 HOH F 32 532 224 HOH HOH . V 4 HOH F 33 533 196 HOH HOH . V 4 HOH F 34 534 300 HOH HOH . V 4 HOH F 35 535 349 HOH HOH . V 4 HOH F 36 536 239 HOH HOH . V 4 HOH F 37 537 220 HOH HOH . V 4 HOH F 38 538 155 HOH HOH . V 4 HOH F 39 539 105 HOH HOH . V 4 HOH F 40 540 174 HOH HOH . V 4 HOH F 41 541 304 HOH HOH . V 4 HOH F 42 542 91 HOH HOH . V 4 HOH F 43 543 308 HOH HOH . V 4 HOH F 44 544 303 HOH HOH . V 4 HOH F 45 545 337 HOH HOH . V 4 HOH F 46 546 347 HOH HOH . V 4 HOH F 47 547 346 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 4.203 -31.866 18.246 1 69.42 ? C1 GOL 401 C 1 HETATM 2 O O1 GOL . . . J 2 2.849 -31.499 18.109 1 71.73 ? O1 GOL 401 C 1 HETATM 3 C C2 GOL . . . J 2 5.041 -30.746 18.883 1 71.19 ? C2 GOL 401 C 1 HETATM 4 O O2 GOL . . . J 2 4.265 -29.667 19.402 1 64.98 ? O2 GOL 401 C 1 HETATM 5 C C3 GOL . . . J 2 5.877 -31.369 20.002 1 78.69 ? C3 GOL 401 C 1 HETATM 6 O O3 GOL . . . J 2 7.086 -30.658 20.154 1 88.5 ? O3 GOL 401 C 1 HETATM 7 H H11 GOL . . . J 2 4.272 -32.762 18.863 1 83.3 ? H11 GOL 401 C 1 HETATM 8 H H12 GOL . . . J 2 4.612 -32.107 17.265 1 83.3 ? H12 GOL 401 C 1 HETATM 9 H HO1 GOL . . . J 2 2.363 -32.21 17.641 1 86.07 ? HO1 GOL 401 C 1 HETATM 10 H H2 GOL . . . J 2 5.723 -30.363 18.125 1 85.42 ? H2 GOL 401 C 1 HETATM 11 H HO2 GOL . . . J 2 3.677 -29.999 20.112 1 77.97 ? HO2 GOL 401 C 1 HETATM 12 H H31 GOL . . . J 2 5.317 -31.344 20.936 1 94.43 ? H31 GOL 401 C 1 HETATM 13 H H32 GOL . . . J 2 6.091 -32.411 19.763 1 94.43 ? H32 GOL 401 C 1 HETATM 14 H HO3 GOL . . . J 2 7.748 -31.231 20.594 1 106.2 ? HO3 GOL 401 C 1 # _model_server_stats.io_time_ms 251 _model_server_stats.parse_time_ms 157 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #