data_5TV1 # _model_server_result.job_id -70dGQbFVbzyFPxZDWfUzw _model_server_result.datetime_utc '2024-11-22 04:43:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5TV1 # _exptl.entry_id 5TV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TV1 _cell.length_a 97.575 _cell.length_b 97.575 _cell.length_c 76.938 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 97.575 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.7875 84.502429 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 165 n n C1 C6 IHP sing 166 n n C1 O11 IHP sing 167 n n C1 H1 IHP sing 168 n n C2 C3 IHP sing 169 n n C2 O12 IHP sing 170 n n C2 H2 IHP sing 171 n n C3 C4 IHP sing 172 n n C3 O13 IHP sing 173 n n C3 H3 IHP sing 174 n n C4 C5 IHP sing 175 n n C4 O14 IHP sing 176 n n C4 H4 IHP sing 177 n n C5 C6 IHP sing 178 n n C5 O15 IHP sing 179 n n C5 H5 IHP sing 180 n n C6 O16 IHP sing 181 n n C6 H6 IHP sing 182 n n O11 P1 IHP sing 183 n n P1 O21 IHP doub 184 n n P1 O31 IHP sing 185 n n P1 O41 IHP sing 186 n n O31 H31 IHP sing 187 n n O41 H41 IHP sing 188 n n O12 P2 IHP sing 189 n n P2 O22 IHP doub 190 n n P2 O32 IHP sing 191 n n P2 O42 IHP sing 192 n n O32 H32 IHP sing 193 n n O42 H42 IHP sing 194 n n O13 P3 IHP sing 195 n n P3 O23 IHP doub 196 n n P3 O33 IHP sing 197 n n P3 O43 IHP sing 198 n n O33 H33 IHP sing 199 n n O43 H43 IHP sing 200 n n O14 P4 IHP sing 201 n n P4 O24 IHP doub 202 n n P4 O34 IHP sing 203 n n P4 O44 IHP sing 204 n n O34 H34 IHP sing 205 n n O44 H44 IHP sing 206 n n O15 P5 IHP sing 207 n n P5 O25 IHP doub 208 n n P5 O35 IHP sing 209 n n P5 O45 IHP sing 210 n n O35 H35 IHP sing 211 n n O45 H45 IHP sing 212 n n O16 P6 IHP sing 213 n n P6 O26 IHP doub 214 n n P6 O36 IHP sing 215 n n P6 O46 IHP sing 216 n n O36 H36 IHP sing 217 n n O46 H46 IHP sing 218 n n # _atom_sites.entry_id 5TV1 _atom_sites.fract_transf_matrix[1][1] 0.010249 _atom_sites.fract_transf_matrix[1][2] 0.005917 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHP A 1 401 1 IHP IHP . C 2 IHP A 1 402 2 IHP IHP . D 3 GOL A 1 403 3 GOL GOL . E 3 GOL A 1 404 4 GOL GOL . F 3 GOL A 1 405 5 GOL GOL . G 4 HOH A 1 501 42 HOH HOH . G 4 HOH A 2 502 38 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 24 HOH HOH . G 4 HOH A 5 505 23 HOH HOH . G 4 HOH A 6 506 31 HOH HOH . G 4 HOH A 7 507 9 HOH HOH . G 4 HOH A 8 508 20 HOH HOH . G 4 HOH A 9 509 25 HOH HOH . G 4 HOH A 10 510 2 HOH HOH . G 4 HOH A 11 511 4 HOH HOH . G 4 HOH A 12 512 41 HOH HOH . G 4 HOH A 13 513 30 HOH HOH . G 4 HOH A 14 514 17 HOH HOH . G 4 HOH A 15 515 40 HOH HOH . G 4 HOH A 16 516 12 HOH HOH . G 4 HOH A 17 517 1 HOH HOH . G 4 HOH A 18 518 21 HOH HOH . G 4 HOH A 19 519 3 HOH HOH . G 4 HOH A 20 520 6 HOH HOH . G 4 HOH A 21 521 11 HOH HOH . G 4 HOH A 22 522 15 HOH HOH . G 4 HOH A 23 523 28 HOH HOH . G 4 HOH A 24 524 18 HOH HOH . G 4 HOH A 25 525 5 HOH HOH . G 4 HOH A 26 526 37 HOH HOH . G 4 HOH A 27 527 36 HOH HOH . G 4 HOH A 28 528 14 HOH HOH . G 4 HOH A 29 529 13 HOH HOH . G 4 HOH A 30 530 34 HOH HOH . G 4 HOH A 31 531 8 HOH HOH . G 4 HOH A 32 532 27 HOH HOH . G 4 HOH A 33 533 33 HOH HOH . G 4 HOH A 34 534 10 HOH HOH . G 4 HOH A 35 535 39 HOH HOH . G 4 HOH A 36 536 22 HOH HOH . G 4 HOH A 37 537 35 HOH HOH . G 4 HOH A 38 538 32 HOH HOH . G 4 HOH A 39 539 16 HOH HOH . G 4 HOH A 40 540 26 HOH HOH . G 4 HOH A 41 541 19 HOH HOH . G 4 HOH A 42 542 29 HOH HOH . G 4 HOH A 43 543 43 HOH HOH . G 4 HOH A 44 544 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . B 2 49.063 72.269 68.801 1 141.3 ? C1 IHP 401 A 1 HETATM 2 C C2 IHP . . . B 2 48.87 73.147 67.573 1 142.94 ? C2 IHP 401 A 1 HETATM 3 C C3 IHP . . . B 2 47.797 74.197 67.858 1 149.93 ? C3 IHP 401 A 1 HETATM 4 C C4 IHP . . . B 2 48.124 74.99 69.127 1 156.78 ? C4 IHP 401 A 1 HETATM 5 C C5 IHP . . . B 2 48.219 73.983 70.274 1 156.14 ? C5 IHP 401 A 1 HETATM 6 C C6 IHP . . . B 2 49.476 73.191 69.94 1 147.48 ? C6 IHP 401 A 1 HETATM 7 O O11 IHP . . . B 2 50.012 71.231 68.571 1 138.33 ? O11 IHP 401 A 1 HETATM 8 P P1 IHP . . . B 2 49.594 69.723 68.951 1 129.64 ? P1 IHP 401 A 1 HETATM 9 O O21 IHP . . . B 2 50.325 69.439 70.243 1 130.22 ? O21 IHP 401 A 1 HETATM 10 O O31 IHP . . . B 2 48.095 69.832 69.098 1 128.94 -1 O31 IHP 401 A 1 HETATM 11 O O41 IHP . . . B 2 50.058 68.921 67.757 1 119.8 ? O41 IHP 401 A 1 HETATM 12 O O12 IHP . . . B 2 50.095 73.815 67.278 1 137.99 ? O12 IHP 401 A 1 HETATM 13 P P2 IHP . . . B 2 50.974 73.333 66.024 1 128.47 ? P2 IHP 401 A 1 HETATM 14 O O22 IHP . . . B 2 50.613 74.295 64.921 1 132.86 ? O22 IHP 401 A 1 HETATM 15 O O32 IHP . . . B 2 52.398 73.474 66.511 1 125.42 -1 O32 IHP 401 A 1 HETATM 16 O O42 IHP . . . B 2 50.482 71.917 65.808 1 119.18 ? O42 IHP 401 A 1 HETATM 17 O O13 IHP . . . B 2 47.676 75.067 66.74 1 151.14 ? O13 IHP 401 A 1 HETATM 18 P P3 IHP . . . B 2 46.219 75.386 66.141 1 151.13 ? P3 IHP 401 A 1 HETATM 19 O O23 IHP . . . B 2 45.281 75.111 67.295 1 154.03 ? O23 IHP 401 A 1 HETATM 20 O O33 IHP . . . B 2 46.327 76.836 65.722 1 148.49 -1 O33 IHP 401 A 1 HETATM 21 O O43 IHP . . . B 2 46.091 74.399 65.006 1 142.25 ? O43 IHP 401 A 1 HETATM 22 O O14 IHP . . . B 2 47.182 76.039 69.364 1 168.23 ? O14 IHP 401 A 1 HETATM 23 P P4 IHP . . . B 2 47.649 77.587 69.354 1 183.79 ? P4 IHP 401 A 1 HETATM 24 O O24 IHP . . . B 2 48.831 77.636 70.301 1 167.52 ? O24 IHP 401 A 1 HETATM 25 O O34 IHP . . . B 2 46.421 78.322 69.844 1 172.82 -1 O34 IHP 401 A 1 HETATM 26 O O44 IHP . . . B 2 47.999 77.865 67.91 1 164.06 ? O44 IHP 401 A 1 HETATM 27 O O15 IHP . . . B 2 48.209 74.54 71.596 1 162.73 ? O15 IHP 401 A 1 HETATM 28 P P5 IHP . . . B 2 47.138 73.993 72.687 1 162.67 ? P5 IHP 401 A 1 HETATM 29 O O25 IHP . . . B 2 46.092 75.081 72.776 1 167.19 ? O25 IHP 401 A 1 HETATM 30 O O35 IHP . . . B 2 47.942 73.822 73.955 1 164.01 -1 O35 IHP 401 A 1 HETATM 31 O O45 IHP . . . B 2 46.628 72.697 72.1 1 155.72 ? O45 IHP 401 A 1 HETATM 32 O O16 IHP . . . B 2 50.037 72.51 71.058 1 148.4 ? O16 IHP 401 A 1 HETATM 33 P P6 IHP . . . B 2 51.319 73.191 71.765 1 146.33 ? P6 IHP 401 A 1 HETATM 34 O O26 IHP . . . B 2 52.518 72.56 71.097 1 118.1 ? O26 IHP 401 A 1 HETATM 35 O O36 IHP . . . B 2 51.187 74.669 71.457 1 145.98 -1 O36 IHP 401 A 1 HETATM 36 O O46 IHP . . . B 2 51.12 72.807 73.215 1 148.06 ? O46 IHP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #