data_5TV1 # _model_server_result.job_id WiXG_YgMwiZOBQK5Erlyrw _model_server_result.datetime_utc '2024-11-22 04:30:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5TV1 # _exptl.entry_id 5TV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TV1 _cell.length_a 97.575 _cell.length_b 97.575 _cell.length_c 76.938 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 97.575 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.7875 84.502429 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5TV1 _atom_sites.fract_transf_matrix[1][1] 0.010249 _atom_sites.fract_transf_matrix[1][2] 0.005917 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012997 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHP A 1 401 1 IHP IHP . C 2 IHP A 1 402 2 IHP IHP . D 3 GOL A 1 403 3 GOL GOL . E 3 GOL A 1 404 4 GOL GOL . F 3 GOL A 1 405 5 GOL GOL . G 4 HOH A 1 501 42 HOH HOH . G 4 HOH A 2 502 38 HOH HOH . G 4 HOH A 3 503 7 HOH HOH . G 4 HOH A 4 504 24 HOH HOH . G 4 HOH A 5 505 23 HOH HOH . G 4 HOH A 6 506 31 HOH HOH . G 4 HOH A 7 507 9 HOH HOH . G 4 HOH A 8 508 20 HOH HOH . G 4 HOH A 9 509 25 HOH HOH . G 4 HOH A 10 510 2 HOH HOH . G 4 HOH A 11 511 4 HOH HOH . G 4 HOH A 12 512 41 HOH HOH . G 4 HOH A 13 513 30 HOH HOH . G 4 HOH A 14 514 17 HOH HOH . G 4 HOH A 15 515 40 HOH HOH . G 4 HOH A 16 516 12 HOH HOH . G 4 HOH A 17 517 1 HOH HOH . G 4 HOH A 18 518 21 HOH HOH . G 4 HOH A 19 519 3 HOH HOH . G 4 HOH A 20 520 6 HOH HOH . G 4 HOH A 21 521 11 HOH HOH . G 4 HOH A 22 522 15 HOH HOH . G 4 HOH A 23 523 28 HOH HOH . G 4 HOH A 24 524 18 HOH HOH . G 4 HOH A 25 525 5 HOH HOH . G 4 HOH A 26 526 37 HOH HOH . G 4 HOH A 27 527 36 HOH HOH . G 4 HOH A 28 528 14 HOH HOH . G 4 HOH A 29 529 13 HOH HOH . G 4 HOH A 30 530 34 HOH HOH . G 4 HOH A 31 531 8 HOH HOH . G 4 HOH A 32 532 27 HOH HOH . G 4 HOH A 33 533 33 HOH HOH . G 4 HOH A 34 534 10 HOH HOH . G 4 HOH A 35 535 39 HOH HOH . G 4 HOH A 36 536 22 HOH HOH . G 4 HOH A 37 537 35 HOH HOH . G 4 HOH A 38 538 32 HOH HOH . G 4 HOH A 39 539 16 HOH HOH . G 4 HOH A 40 540 26 HOH HOH . G 4 HOH A 41 541 19 HOH HOH . G 4 HOH A 42 542 29 HOH HOH . G 4 HOH A 43 543 43 HOH HOH . G 4 HOH A 44 544 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 52.753 53.936 64.043 1 105 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 53.568 53.11 64.875 1 107.01 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 52.94 53.563 62.557 1 109.88 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 52.017 54.259 61.768 1 108.55 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 52.784 52.067 62.325 1 111.11 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 52.573 51.845 60.948 1 105.97 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 76 _model_server_stats.create_model_time_ms 105 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #