data_5TV3
#
_model_server_result.job_id            DhYIKtIZNwxhcchzRszKuQ 
_model_server_result.datetime_utc      '2024-11-30 05:46:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tv3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":302}' 
#
_entry.id    5TV3 
#
_exptl.entry_id    5TV3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.3 
_cell.angle_gamma         90 
_cell.entry_id            5TV3 
_cell.length_a            41.56 
_cell.length_b            133.89 
_cell.length_c            166.6 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TV3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,L 1 1 
C,D,M,N,O,P,Q,R 2 1 
E,F,S,T,U,V 3 1 
G,H,W,X,Y,Z,AA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 32 A CYS 45 1_555 A SG CYS 182 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
disulf ? disulf2 B SG CYS 32 B CYS 45 1_555 B SG CYS 182 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 C SG CYS 32 C CYS 45 1_555 C SG CYS 182 C CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 D SG CYS 32 D CYS 45 1_555 D SG CYS 182 D CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 E SG CYS 32 E CYS 45 1_555 E SG CYS 182 E CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
disulf ? disulf6 F SG CYS 32 F CYS 45 1_555 F SG CYS 182 F CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf7 G SG CYS 32 G CYS 45 1_555 G SG CYS 182 G CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf8 H SG CYS 32 H CYS 45 1_555 H SG CYS 182 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc1 A NE2 HIS 97 A HIS 110 1_555 I ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc2 A NE2 HIS 99 A HIS 112 1_555 I ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? 
metalc ? metalc3 A ND1 HIS 116 A HIS 129 1_555 I ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc4 I ZN ZN . A ZN 301 1_555 J NAI 7L3 . A 7L3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
metalc ? metalc5 B NE2 HIS 97 B HIS 110 1_555 K ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc6 B NE2 HIS 99 B HIS 112 1_555 K ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? 
metalc ? metalc7 B ND1 HIS 116 B HIS 129 1_555 K ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc8 K ZN ZN . B ZN 301 1_555 L NAI 7L3 . B 7L3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc9 C NE2 HIS 97 C HIS 110 1_555 M ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc10 C NE2 HIS 99 C HIS 112 1_555 M ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? 
metalc ? metalc11 C ND1 HIS 116 C HIS 129 1_555 M ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc12 M ZN ZN . C ZN 301 1_555 O NAI 7L3 . C 7L3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc13 D NE2 HIS 97 D HIS 110 1_555 P ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc14 D NE2 HIS 99 D HIS 112 1_555 P ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? 
metalc ? metalc15 D ND1 HIS 116 D HIS 129 1_555 P ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc16 P ZN ZN . D ZN 301 1_555 R NAI 7L3 . D 7L3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc17 E NE2 HIS 97 E HIS 110 1_555 S ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
metalc ? metalc18 E NE2 HIS 99 E HIS 112 1_555 S ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? 
metalc ? metalc19 E ND1 HIS 116 E HIS 129 1_555 S ZN ZN . E ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc20 S ZN ZN . E ZN 301 1_555 T NAI 7L3 . E 7L3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc21 F NE2 HIS 97 F HIS 110 1_555 U ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc22 F NE2 HIS 99 F HIS 112 1_555 U ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.729 ? 
metalc ? metalc23 F ND1 HIS 116 F HIS 129 1_555 U ZN ZN . F ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc24 U ZN ZN . F ZN 301 1_555 V NAI 7L3 . F 7L3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc25 G NE2 HIS 97 G HIS 110 1_555 W ZN ZN . G ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc26 G NE2 HIS 99 G HIS 112 1_555 W ZN ZN . G ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc27 G ND1 HIS 116 G HIS 129 1_555 W ZN ZN . G ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc28 W ZN ZN . G ZN 301 1_555 Y NAI 7L3 . G 7L3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
metalc ? metalc29 H NE2 HIS 97 H HIS 110 1_555 Z ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc30 H NE2 HIS 99 H HIS 112 1_555 Z ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
metalc ? metalc31 H ND1 HIS 116 H HIS 129 1_555 Z ZN ZN . H ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc32 Z ZN ZN . H ZN 301 1_555 AA NAI 7L3 . H 7L3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 172 n n 
C1 C2 GOL sing 173 n n 
C1 H11 GOL sing 174 n n 
C1 H12 GOL sing 175 n n 
O1 HO1 GOL sing 176 n n 
C2 O2 GOL sing 177 n n 
C2 C3 GOL sing 178 n n 
C2 H2 GOL sing 179 n n 
O2 HO2 GOL sing 180 n n 
C3 O3 GOL sing 181 n n 
C3 H31 GOL sing 182 n n 
C3 H32 GOL sing 183 n n 
O3 HO3 GOL sing 184 n n 
#
_atom_sites.entry_id                     5TV3 
_atom_sites.fract_transf_matrix[1][1]    0.024062 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000126 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007469 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ZN A 1 301 301 ZN ZN . 
J 3 7L3 A 1 302 1 7L3 7L3 . 
K 2 ZN B 1 301 301 ZN ZN . 
L 3 7L3 B 1 302 2 7L3 7L3 . 
M 2 ZN C 1 301 301 ZN ZN . 
N 4 GOL C 1 302 303 GOL GOL . 
O 3 7L3 C 1 303 3 7L3 7L3 . 
P 2 ZN D 1 301 301 ZN ZN . 
Q 5 CL D 1 302 303 CL CL . 
R 3 7L3 D 1 303 4 7L3 7L3 . 
S 2 ZN E 1 301 301 ZN ZN . 
T 3 7L3 E 1 302 5 7L3 7L3 . 
U 2 ZN F 1 301 301 ZN ZN . 
V 3 7L3 F 1 302 6 7L3 7L3 . 
W 2 ZN G 1 301 301 ZN ZN . 
X 5 CL G 1 302 303 CL CL . 
Y 3 7L3 G 1 303 7 7L3 7L3 . 
Z 2 ZN H 1 301 1 ZN ZN . 
AA 3 7L3 H 1 302 8 7L3 7L3 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 4 10.79 -44.76 58.978 1 43.12 ? C1 GOL 302 C 1 
HETATM 2 O O1 GOL . . . N 4 10.332 -43.739 59.871 1 42.49 ? O1 GOL 302 C 1 
HETATM 3 C C2 GOL . . . N 4 12.242 -45.097 59.293 1 54.18 ? C2 GOL 302 C 1 
HETATM 4 O O2 GOL . . . N 4 13.09 -44.045 58.819 1 64.87 ? O2 GOL 302 C 1 
HETATM 5 C C3 GOL . . . N 4 12.414 -45.248 60.8 1 50.87 ? C3 GOL 302 C 1 
HETATM 6 O O3 GOL . . . N 4 13.626 -44.604 61.209 1 45.09 ? O3 GOL 302 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           389 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           6 
#