data_5TV4 # _model_server_result.job_id -2gC_eXhe5Jg4R0A9MBoEw _model_server_result.datetime_utc '2024-11-21 14:23:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":605}' # _entry.id 5TV4 # _exptl.entry_id 5TV4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 200.318 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TV4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 PA1 PA1 C1 O1 . O6 HO6 . sing 2 ? 2 3 2 KDO PA1 C2 O2 . O6 HO6 . sing 3 ? 2 4 3 GMH KDO C1 O1 . O5 HO5 . sing 4 ? 2 5 4 GMH GMH C1 O1 . O3 HO3 . sing 5 ? 2 6 5 GMH GMH C1 O1 . O7 HO7 . sing 6 ? 2 7 3 KDO KDO C2 O2 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C PA1 1 C 1 PA1 A 602 PA1 2 n C PA1 2 C 2 PA1 A 601 PA1 2 n C KDO 3 C 3 KDO A 603 KDO 2 n C GMH 4 C 4 GMH A 605 GMH 2 n C GMH 5 C 5 GMH A 606 GMH 2 n C GMH 6 C 6 GMH A 607 GMH 2 n C KDO 7 C 7 KDO A 604 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O LEU 100 A LEU 77 1_555 A CG2 THR 104 A THR 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale2 D P PO4 . A PO4 608 1_555 C O1 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale3 E P PO4 . A PO4 609 1_555 C O4 GMH . C GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale4 F P PO4 . A PO4 610 1_555 C O4 GMH . C GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.58 ? covale ? covale5 G P PO4 . B PO4 601 1_555 C O4 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? covale ? covale6 H O3 FTT . B FTT 602 1_555 I C1 MYR . B MYR 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale7 H C1 FTT . B FTT 602 1_555 C O3 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale8 J O3 FTT . B FTT 604 1_555 K C1 DAO . B DAO 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale9 J C1 FTT . B FTT 604 1_555 C N2 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale10 L C1 FTT . B FTT 606 1_555 C O3 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale11 M C1 FTT . B FTT 607 1_555 C N2 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale12 C O6 PA1 . C PA1 1 1_555 C C1 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale13 C O6 PA1 . C PA1 2 1_555 C C2 KDO . C KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale14 C O5 KDO . C KDO 3 1_555 C C1 GMH . C GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 C O4 KDO . C KDO 3 1_555 C C2 KDO . C KDO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale16 C O3 GMH . C GMH 4 1_555 C C1 GMH . C GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale17 C O7 GMH . C GMH 5 1_555 C C1 GMH . C GMH 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C12 H24 O2' _chem_comp.formula_weight 200.318 _chem_comp.id DAO _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 DAO doub 83 n n O2 C1 DAO sing 84 n n O2 HO2 DAO sing 85 n n C1 C2 DAO sing 86 n n C2 C3 DAO sing 87 n n C2 H21 DAO sing 88 n n C2 H22 DAO sing 89 n n C3 C4 DAO sing 90 n n C3 H31 DAO sing 91 n n C3 H32 DAO sing 92 n n C4 C5 DAO sing 93 n n C4 H41 DAO sing 94 n n C4 H42 DAO sing 95 n n C5 C6 DAO sing 96 n n C5 H51 DAO sing 97 n n C5 H52 DAO sing 98 n n C6 C7 DAO sing 99 n n C6 H61 DAO sing 100 n n C6 H62 DAO sing 101 n n C7 C8 DAO sing 102 n n C7 H71 DAO sing 103 n n C7 H72 DAO sing 104 n n C8 C9 DAO sing 105 n n C8 H81 DAO sing 106 n n C8 H82 DAO sing 107 n n C9 C10 DAO sing 108 n n C9 H91 DAO sing 109 n n C9 H92 DAO sing 110 n n C10 C11 DAO sing 111 n n C10 H101 DAO sing 112 n n C10 H102 DAO sing 113 n n C11 C12 DAO sing 114 n n C11 H111 DAO sing 115 n n C11 H112 DAO sing 116 n n C12 H121 DAO sing 117 n n C12 H122 DAO sing 118 n n C12 H123 DAO sing 119 n n # _atom_sites.entry_id 5TV4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PO4 A 1 608 608 PO4 PO4 . E 3 PO4 A 1 609 609 PO4 PO4 . F 3 PO4 A 1 610 610 PO4 PO4 . G 3 PO4 B 1 601 601 PO4 PO4 . H 4 FTT B 1 602 602 FTT FTT . I 5 MYR B 1 603 603 MYR MYR . J 4 FTT B 1 604 604 FTT FTT . K 6 DAO B 1 605 605 DAO DAO . L 4 FTT B 1 606 606 FTT FTT . M 4 FTT B 1 607 607 FTT FTT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 DAO . . . K 6 -0.436 1.871 -19.651 1 20 ? O1 DAO 605 B 1 HETATM 2 C C1 DAO . . . K 6 -0.178 2.111 -20.831 1 20 ? C1 DAO 605 B 1 HETATM 3 C C2 DAO . . . K 6 -0.259 1.02 -21.903 1 20 ? C2 DAO 605 B 1 HETATM 4 C C3 DAO . . . K 6 -1.497 1.248 -22.776 1 20 ? C3 DAO 605 B 1 HETATM 5 C C4 DAO . . . K 6 -1.198 1.045 -24.264 1 20 ? C4 DAO 605 B 1 HETATM 6 C C5 DAO . . . K 6 0.1 1.747 -24.64 1 20 ? C5 DAO 605 B 1 HETATM 7 C C6 DAO . . . K 6 -0.101 2.501 -25.95 1 20 ? C6 DAO 605 B 1 HETATM 8 C C7 DAO . . . K 6 0.03 3.999 -25.696 1 20 ? C7 DAO 605 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 8 #