data_5TV4 # _model_server_result.job_id Dn_cEgRg0sys4YuwTo3JRw _model_server_result.datetime_utc '2024-11-21 13:49:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":606}' # _entry.id 5TV4 # _exptl.entry_id 5TV4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 244.37 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-HYDROXY-TETRADECANOIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TV4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N ? 4 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 PA1 PA1 C1 O1 . O6 HO6 . sing 2 ? 2 3 2 KDO PA1 C2 O2 . O6 HO6 . sing 3 ? 2 4 3 GMH KDO C1 O1 . O5 HO5 . sing 4 ? 2 5 4 GMH GMH C1 O1 . O3 HO3 . sing 5 ? 2 6 5 GMH GMH C1 O1 . O7 HO7 . sing 6 ? 2 7 3 KDO KDO C2 O2 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C PA1 1 C 1 PA1 A 602 PA1 2 n C PA1 2 C 2 PA1 A 601 PA1 2 n C KDO 3 C 3 KDO A 603 KDO 2 n C GMH 4 C 4 GMH A 605 GMH 2 n C GMH 5 C 5 GMH A 606 GMH 2 n C GMH 6 C 6 GMH A 607 GMH 2 n C KDO 7 C 7 KDO A 604 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O LEU 100 A LEU 77 1_555 A CG2 THR 104 A THR 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.511 ? covale ? covale2 D P PO4 . A PO4 608 1_555 C O1 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale3 E P PO4 . A PO4 609 1_555 C O4 GMH . C GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale4 F P PO4 . A PO4 610 1_555 C O4 GMH . C GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.58 ? covale ? covale5 G P PO4 . B PO4 601 1_555 C O4 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? covale ? covale6 H O3 FTT . B FTT 602 1_555 I C1 MYR . B MYR 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale7 H C1 FTT . B FTT 602 1_555 C O3 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale8 J O3 FTT . B FTT 604 1_555 K C1 DAO . B DAO 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale9 J C1 FTT . B FTT 604 1_555 C N2 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale10 L C1 FTT . B FTT 606 1_555 C O3 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale11 M C1 FTT . B FTT 607 1_555 C N2 PA1 . C PA1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale12 C O6 PA1 . C PA1 1 1_555 C C1 PA1 . C PA1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? covale ? covale13 C O6 PA1 . C PA1 2 1_555 C C2 KDO . C KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale14 C O5 KDO . C KDO 3 1_555 C C1 GMH . C GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale15 C O4 KDO . C KDO 3 1_555 C C2 KDO . C KDO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale16 C O3 GMH . C GMH 4 1_555 C C1 GMH . C GMH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale17 C O7 GMH . C GMH 5 1_555 C C1 GMH . C GMH 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C14 H28 O3' _chem_comp.formula_weight 244.37 _chem_comp.id FTT _chem_comp.mon_nstd_flag . _chem_comp.name '3-HYDROXY-TETRADECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '3-HYDROXY-MYRISTIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FTT sing 120 n n C1 O2 FTT doub 121 n n C1 O1 FTT sing 122 n n C2 C3 FTT sing 123 n n C2 H21 FTT sing 124 n n C2 H22 FTT sing 125 n n C3 C4 FTT sing 126 n n C3 O3 FTT sing 127 n n C3 H3 FTT sing 128 n n C4 C5 FTT sing 129 n n C4 H41 FTT sing 130 n n C4 H42 FTT sing 131 n n C5 C6 FTT sing 132 n n C5 H51 FTT sing 133 n n C5 H52 FTT sing 134 n n C6 C7 FTT sing 135 n n C6 H61 FTT sing 136 n n C6 H62 FTT sing 137 n n C7 C8 FTT sing 138 n n C7 H71 FTT sing 139 n n C7 H72 FTT sing 140 n n C8 C9 FTT sing 141 n n C8 H81 FTT sing 142 n n C8 H82 FTT sing 143 n n C9 C10 FTT sing 144 n n C9 H91 FTT sing 145 n n C9 H92 FTT sing 146 n n C10 C11 FTT sing 147 n n C10 H101 FTT sing 148 n n C10 H102 FTT sing 149 n n C11 C12 FTT sing 150 n n C11 H111 FTT sing 151 n n C11 H112 FTT sing 152 n n C12 C13 FTT sing 153 n n C12 H121 FTT sing 154 n n C12 H122 FTT sing 155 n n C13 C14 FTT sing 156 n n C13 H131 FTT sing 157 n n C13 H132 FTT sing 158 n n C14 H141 FTT sing 159 n n C14 H142 FTT sing 160 n n C14 H143 FTT sing 161 n n O3 HO3 FTT sing 162 n n O1 HO1 FTT sing 163 n n # _atom_sites.entry_id 5TV4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PO4 A 1 608 608 PO4 PO4 . E 3 PO4 A 1 609 609 PO4 PO4 . F 3 PO4 A 1 610 610 PO4 PO4 . G 3 PO4 B 1 601 601 PO4 PO4 . H 4 FTT B 1 602 602 FTT FTT . I 5 MYR B 1 603 603 MYR MYR . J 4 FTT B 1 604 604 FTT FTT . K 6 DAO B 1 605 605 DAO DAO . L 4 FTT B 1 606 606 FTT FTT . M 4 FTT B 1 607 607 FTT FTT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FTT . . . L 4 -3.765 -2.226 -19.827 1 20 ? C1 FTT 606 B 1 HETATM 2 C C2 FTT . . . L 4 -4.983 -2.852 -20.497 1 20 ? C2 FTT 606 B 1 HETATM 3 C C3 FTT . . . L 4 -5.444 -1.951 -21.642 1 20 ? C3 FTT 606 B 1 HETATM 4 C C4 FTT . . . L 4 -6.302 -2.752 -22.605 1 20 ? C4 FTT 606 B 1 HETATM 5 C C5 FTT . . . L 4 -6.488 -1.957 -23.888 1 20 ? C5 FTT 606 B 1 HETATM 6 C C6 FTT . . . L 4 -6.235 -2.881 -25.069 1 20 ? C6 FTT 606 B 1 HETATM 7 C C7 FTT . . . L 4 -5.669 -2.062 -26.219 1 20 ? C7 FTT 606 B 1 HETATM 8 C C8 FTT . . . L 4 -6.615 -0.91 -26.541 1 20 ? C8 FTT 606 B 1 HETATM 9 C C9 FTT . . . L 4 -6.184 -0.25 -27.85 1 20 ? C9 FTT 606 B 1 HETATM 10 C C10 FTT . . . L 4 -7.405 0.353 -28.54 1 20 ? C10 FTT 606 B 1 HETATM 11 C C11 FTT . . . L 4 -8.074 -0.688 -29.436 1 20 ? C11 FTT 606 B 1 HETATM 12 C C12 FTT . . . L 4 -8.805 0.01 -30.581 1 20 ? C12 FTT 606 B 1 HETATM 13 C C13 FTT . . . L 4 -7.922 0.003 -31.826 1 20 ? C13 FTT 606 B 1 HETATM 14 C C14 FTT . . . L 4 -8.792 0.13 -33.075 1 20 ? C14 FTT 606 B 1 HETATM 15 O O2 FTT . . . L 4 -2.738 -2.867 -19.631 1 20 ? O2 FTT 606 B 1 HETATM 16 O O3 FTT . . . L 4 -6.222 -0.873 -21.134 1 20 ? O3 FTT 606 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 16 #