data_5TV8 # _model_server_result.job_id ze0N54QeLK4gg3Jd3UQvoA _model_server_result.datetime_utc '2024-11-15 09:38:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tv8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 5TV8 # _exptl.entry_id 5TV8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 160.168 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PIMELIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TV8 _cell.length_a 68.576 _cell.length_b 106.381 _cell.length_c 113.553 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TV8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 173 A CYS 173 1_555 A SG CYS 230 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 B SG CYS 173 B CYS 173 1_555 B SG CYS 230 B CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc1 C O2B APC . A APC 301 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 F O1B APC . B APC 301 1_555 G MG MG . B MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C7 H12 O4' _chem_comp.formula_weight 160.168 _chem_comp.id PML _chem_comp.mon_nstd_flag . _chem_comp.name 'PIMELIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O11 PML doub 311 n n C1 O12 PML sing 312 n n C1 C2 PML sing 313 n n O12 H12 PML sing 314 n n C2 C3 PML sing 315 n n C2 HC21 PML sing 316 n n C2 HC22 PML sing 317 n n C3 C4 PML sing 318 n n C3 HC31 PML sing 319 n n C3 HC32 PML sing 320 n n C4 C5 PML sing 321 n n C4 HC41 PML sing 322 n n C4 HC42 PML sing 323 n n C5 C6 PML sing 324 n n C5 HC51 PML sing 325 n n C5 HC52 PML sing 326 n n C6 C7 PML sing 327 n n C6 HC61 PML sing 328 n n C6 HC62 PML sing 329 n n C7 O71 PML doub 330 n n C7 O72 PML sing 331 n n O72 H72 PML sing 332 n n # _atom_sites.entry_id 5TV8 _atom_sites.fract_transf_matrix[1][1] 0.014582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 APC A 1 301 400 APC APC . D 3 MG A 1 302 401 MG MG . E 4 PML A 1 303 500 PML PML . F 2 APC B 1 301 400 APC APC . G 3 MG B 1 302 401 MG MG . H 4 PML B 1 303 500 PML PML . I 5 HOH A 1 401 123 HOH HOH . I 5 HOH A 2 402 53 HOH HOH . I 5 HOH A 3 403 41 HOH HOH . I 5 HOH A 4 404 105 HOH HOH . I 5 HOH A 5 405 43 HOH HOH . I 5 HOH A 6 406 94 HOH HOH . I 5 HOH A 7 407 11 HOH HOH . I 5 HOH A 8 408 32 HOH HOH . I 5 HOH A 9 409 24 HOH HOH . I 5 HOH A 10 410 71 HOH HOH . I 5 HOH A 11 411 18 HOH HOH . I 5 HOH A 12 412 86 HOH HOH . I 5 HOH A 13 413 64 HOH HOH . I 5 HOH A 14 414 3 HOH HOH . I 5 HOH A 15 415 69 HOH HOH . I 5 HOH A 16 416 4 HOH HOH . I 5 HOH A 17 417 151 HOH HOH . I 5 HOH A 18 418 14 HOH HOH . I 5 HOH A 19 419 90 HOH HOH . I 5 HOH A 20 420 23 HOH HOH . I 5 HOH A 21 421 12 HOH HOH . I 5 HOH A 22 422 38 HOH HOH . I 5 HOH A 23 423 46 HOH HOH . I 5 HOH A 24 424 107 HOH HOH . I 5 HOH A 25 425 44 HOH HOH . I 5 HOH A 26 426 33 HOH HOH . I 5 HOH A 27 427 10 HOH HOH . I 5 HOH A 28 428 77 HOH HOH . I 5 HOH A 29 429 52 HOH HOH . I 5 HOH A 30 430 89 HOH HOH . I 5 HOH A 31 431 134 HOH HOH . I 5 HOH A 32 432 63 HOH HOH . I 5 HOH A 33 433 87 HOH HOH . I 5 HOH A 34 434 70 HOH HOH . I 5 HOH A 35 435 15 HOH HOH . I 5 HOH A 36 436 116 HOH HOH . I 5 HOH A 37 437 162 HOH HOH . I 5 HOH A 38 438 106 HOH HOH . I 5 HOH A 39 439 97 HOH HOH . I 5 HOH A 40 440 83 HOH HOH . I 5 HOH A 41 441 35 HOH HOH . I 5 HOH A 42 442 74 HOH HOH . I 5 HOH A 43 443 100 HOH HOH . I 5 HOH A 44 444 72 HOH HOH . I 5 HOH A 45 445 96 HOH HOH . I 5 HOH A 46 446 6 HOH HOH . I 5 HOH A 47 447 16 HOH HOH . I 5 HOH A 48 448 62 HOH HOH . I 5 HOH A 49 449 104 HOH HOH . I 5 HOH A 50 450 141 HOH HOH . I 5 HOH A 51 451 110 HOH HOH . I 5 HOH A 52 452 59 HOH HOH . I 5 HOH A 53 453 143 HOH HOH . I 5 HOH A 54 454 75 HOH HOH . I 5 HOH A 55 455 20 HOH HOH . I 5 HOH A 56 456 56 HOH HOH . I 5 HOH A 57 457 88 HOH HOH . I 5 HOH A 58 458 126 HOH HOH . I 5 HOH A 59 459 48 HOH HOH . I 5 HOH A 60 460 54 HOH HOH . I 5 HOH A 61 461 66 HOH HOH . I 5 HOH A 62 462 9 HOH HOH . I 5 HOH A 63 463 34 HOH HOH . I 5 HOH A 64 464 81 HOH HOH . I 5 HOH A 65 465 109 HOH HOH . I 5 HOH A 66 466 65 HOH HOH . I 5 HOH A 67 467 78 HOH HOH . I 5 HOH A 68 468 91 HOH HOH . I 5 HOH A 69 469 42 HOH HOH . I 5 HOH A 70 470 30 HOH HOH . I 5 HOH A 71 471 129 HOH HOH . I 5 HOH A 72 472 103 HOH HOH . I 5 HOH A 73 473 111 HOH HOH . I 5 HOH A 74 474 115 HOH HOH . I 5 HOH A 75 475 144 HOH HOH . I 5 HOH A 76 476 168 HOH HOH . I 5 HOH A 77 477 138 HOH HOH . I 5 HOH A 78 478 121 HOH HOH . I 5 HOH A 79 479 57 HOH HOH . I 5 HOH A 80 480 165 HOH HOH . I 5 HOH A 81 481 102 HOH HOH . I 5 HOH A 82 482 45 HOH HOH . I 5 HOH A 83 483 8 HOH HOH . I 5 HOH A 84 484 114 HOH HOH . I 5 HOH A 85 485 131 HOH HOH . I 5 HOH A 86 486 26 HOH HOH . I 5 HOH A 87 487 150 HOH HOH . I 5 HOH A 88 488 25 HOH HOH . I 5 HOH A 89 489 80 HOH HOH . I 5 HOH A 90 490 152 HOH HOH . I 5 HOH A 91 491 140 HOH HOH . I 5 HOH A 92 492 95 HOH HOH . J 5 HOH B 1 401 112 HOH HOH . J 5 HOH B 2 402 157 HOH HOH . J 5 HOH B 3 403 47 HOH HOH . J 5 HOH B 4 404 133 HOH HOH . J 5 HOH B 5 405 108 HOH HOH . J 5 HOH B 6 406 28 HOH HOH . J 5 HOH B 7 407 31 HOH HOH . J 5 HOH B 8 408 50 HOH HOH . J 5 HOH B 9 409 153 HOH HOH . J 5 HOH B 10 410 147 HOH HOH . J 5 HOH B 11 411 61 HOH HOH . J 5 HOH B 12 412 55 HOH HOH . J 5 HOH B 13 413 160 HOH HOH . J 5 HOH B 14 414 164 HOH HOH . J 5 HOH B 15 415 119 HOH HOH . J 5 HOH B 16 416 122 HOH HOH . J 5 HOH B 17 417 132 HOH HOH . J 5 HOH B 18 418 40 HOH HOH . J 5 HOH B 19 419 85 HOH HOH . J 5 HOH B 20 420 170 HOH HOH . J 5 HOH B 21 421 82 HOH HOH . J 5 HOH B 22 422 27 HOH HOH . J 5 HOH B 23 423 49 HOH HOH . J 5 HOH B 24 424 92 HOH HOH . J 5 HOH B 25 425 7 HOH HOH . J 5 HOH B 26 426 60 HOH HOH . J 5 HOH B 27 427 127 HOH HOH . J 5 HOH B 28 428 125 HOH HOH . J 5 HOH B 29 429 113 HOH HOH . J 5 HOH B 30 430 29 HOH HOH . J 5 HOH B 31 431 117 HOH HOH . J 5 HOH B 32 432 76 HOH HOH . J 5 HOH B 33 433 21 HOH HOH . J 5 HOH B 34 434 139 HOH HOH . J 5 HOH B 35 435 149 HOH HOH . J 5 HOH B 36 436 145 HOH HOH . J 5 HOH B 37 437 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PML . . . H 4 9.959 45.874 36.467 1 69.2 ? C1 PML 303 B 1 HETATM 2 O O11 PML . . . H 4 9.325 46.581 35.653 1 75.53 ? O11 PML 303 B 1 HETATM 3 O O12 PML . . . H 4 10.664 44.909 36.132 1 72.86 ? O12 PML 303 B 1 HETATM 4 C C2 PML . . . H 4 9.899 46.171 37.938 1 67.96 ? C2 PML 303 B 1 HETATM 5 C C3 PML . . . H 4 9.426 47.593 38.201 1 67.22 ? C3 PML 303 B 1 HETATM 6 C C4 PML . . . H 4 8.292 47.469 39.206 1 67.8 ? C4 PML 303 B 1 HETATM 7 C C5 PML . . . H 4 7.121 48.371 38.876 1 61.89 ? C5 PML 303 B 1 HETATM 8 C C6 PML . . . H 4 7.171 49.495 39.9 1 67.59 ? C6 PML 303 B 1 HETATM 9 C C7 PML . . . H 4 5.802 49.787 40.438 1 65.48 ? C7 PML 303 B 1 HETATM 10 O O71 PML . . . H 4 5.233 50.817 40.041 1 65.48 ? O71 PML 303 B 1 HETATM 11 O O72 PML . . . H 4 5.297 48.995 41.256 1 69.71 ? O72 PML 303 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 11 #