data_5TVA
#
_model_server_result.job_id            Vm4EBycQJtXp4Y10hXvtaw 
_model_server_result.datetime_utc      '2024-11-15 11:26:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tva 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5TVA 
#
_exptl.entry_id    5TVA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5TVA 
_cell.length_a            55.66 
_cell.length_b            68.86 
_cell.length_c            156.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TVA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 173 A CYS 173 1_555 A SG CYS 230 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
disulf ? disulf2 B SG CYS 173 B CYS 173 1_555 B SG CYS 230 B CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     5TVA 
_atom_sites.fract_transf_matrix[1][1]    0.017966 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014522 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 301 500 AMP AMP . 
D 3 COA A 1 302 600 COA COA . 
E 2 AMP B 1 500 500 AMP AMP . 
F 4 HOH A 1 401 51 HOH HOH . 
F 4 HOH A 2 402 86 HOH HOH . 
F 4 HOH A 3 403 102 HOH HOH . 
F 4 HOH A 4 404 24 HOH HOH . 
F 4 HOH A 5 405 27 HOH HOH . 
F 4 HOH A 6 406 81 HOH HOH . 
F 4 HOH A 7 407 66 HOH HOH . 
F 4 HOH A 8 408 59 HOH HOH . 
F 4 HOH A 9 409 8 HOH HOH . 
F 4 HOH A 10 410 90 HOH HOH . 
F 4 HOH A 11 411 39 HOH HOH . 
F 4 HOH A 12 412 56 HOH HOH . 
F 4 HOH A 13 413 74 HOH HOH . 
F 4 HOH A 14 414 91 HOH HOH . 
F 4 HOH A 15 415 11 HOH HOH . 
F 4 HOH A 16 416 21 HOH HOH . 
F 4 HOH A 17 417 19 HOH HOH . 
F 4 HOH A 18 418 18 HOH HOH . 
F 4 HOH A 19 419 10 HOH HOH . 
F 4 HOH A 20 420 3 HOH HOH . 
F 4 HOH A 21 421 1 HOH HOH . 
F 4 HOH A 22 422 14 HOH HOH . 
F 4 HOH A 23 423 72 HOH HOH . 
F 4 HOH A 24 424 65 HOH HOH . 
F 4 HOH A 25 425 107 HOH HOH . 
F 4 HOH A 26 426 77 HOH HOH . 
F 4 HOH A 27 427 5 HOH HOH . 
F 4 HOH A 28 428 28 HOH HOH . 
F 4 HOH A 29 429 6 HOH HOH . 
F 4 HOH A 30 430 80 HOH HOH . 
F 4 HOH A 31 431 20 HOH HOH . 
F 4 HOH A 32 432 54 HOH HOH . 
F 4 HOH A 33 433 43 HOH HOH . 
F 4 HOH A 34 434 4 HOH HOH . 
F 4 HOH A 35 435 13 HOH HOH . 
F 4 HOH A 36 436 17 HOH HOH . 
F 4 HOH A 37 437 2 HOH HOH . 
F 4 HOH A 38 438 71 HOH HOH . 
F 4 HOH A 39 439 85 HOH HOH . 
F 4 HOH A 40 440 79 HOH HOH . 
F 4 HOH A 41 441 94 HOH HOH . 
F 4 HOH A 42 442 57 HOH HOH . 
F 4 HOH A 43 443 40 HOH HOH . 
F 4 HOH A 44 444 46 HOH HOH . 
F 4 HOH A 45 445 70 HOH HOH . 
F 4 HOH A 46 446 88 HOH HOH . 
F 4 HOH A 47 447 64 HOH HOH . 
F 4 HOH A 48 448 78 HOH HOH . 
F 4 HOH A 49 449 48 HOH HOH . 
F 4 HOH A 50 450 62 HOH HOH . 
F 4 HOH A 51 451 29 HOH HOH . 
F 4 HOH A 52 452 97 HOH HOH . 
F 4 HOH A 53 453 12 HOH HOH . 
F 4 HOH A 54 454 31 HOH HOH . 
F 4 HOH A 55 455 106 HOH HOH . 
F 4 HOH A 56 456 50 HOH HOH . 
F 4 HOH A 57 457 101 HOH HOH . 
F 4 HOH A 58 458 84 HOH HOH . 
F 4 HOH A 59 459 58 HOH HOH . 
F 4 HOH A 60 460 9 HOH HOH . 
F 4 HOH A 61 461 49 HOH HOH . 
F 4 HOH A 62 462 93 HOH HOH . 
F 4 HOH A 63 463 103 HOH HOH . 
F 4 HOH A 64 464 61 HOH HOH . 
F 4 HOH A 65 465 63 HOH HOH . 
F 4 HOH A 66 466 92 HOH HOH . 
F 4 HOH A 67 467 60 HOH HOH . 
F 4 HOH A 68 468 73 HOH HOH . 
F 4 HOH A 69 469 95 HOH HOH . 
F 4 HOH A 70 470 83 HOH HOH . 
F 4 HOH A 71 471 87 HOH HOH . 
F 4 HOH A 72 472 34 HOH HOH . 
F 4 HOH A 73 473 44 HOH HOH . 
G 4 HOH B 1 601 104 HOH HOH . 
G 4 HOH B 2 602 68 HOH HOH . 
G 4 HOH B 3 603 76 HOH HOH . 
G 4 HOH B 4 604 26 HOH HOH . 
G 4 HOH B 5 605 7 HOH HOH . 
G 4 HOH B 6 606 42 HOH HOH . 
G 4 HOH B 7 607 32 HOH HOH . 
G 4 HOH B 8 608 30 HOH HOH . 
G 4 HOH B 9 609 52 HOH HOH . 
G 4 HOH B 10 610 98 HOH HOH . 
G 4 HOH B 11 611 22 HOH HOH . 
G 4 HOH B 12 612 41 HOH HOH . 
G 4 HOH B 13 613 16 HOH HOH . 
G 4 HOH B 14 614 35 HOH HOH . 
G 4 HOH B 15 615 38 HOH HOH . 
G 4 HOH B 16 616 100 HOH HOH . 
G 4 HOH B 17 617 45 HOH HOH . 
G 4 HOH B 18 618 23 HOH HOH . 
G 4 HOH B 19 619 55 HOH HOH . 
G 4 HOH B 20 620 37 HOH HOH . 
G 4 HOH B 21 621 99 HOH HOH . 
G 4 HOH B 22 622 75 HOH HOH . 
G 4 HOH B 23 623 53 HOH HOH . 
G 4 HOH B 24 624 36 HOH HOH . 
G 4 HOH B 25 625 25 HOH HOH . 
G 4 HOH B 26 626 82 HOH HOH . 
G 4 HOH B 27 627 69 HOH HOH . 
G 4 HOH B 28 628 89 HOH HOH . 
G 4 HOH B 29 629 105 HOH HOH . 
G 4 HOH B 30 630 67 HOH HOH . 
G 4 HOH B 31 631 109 HOH HOH . 
G 4 HOH B 32 632 96 HOH HOH . 
G 4 HOH B 33 633 108 HOH HOH . 
G 4 HOH B 34 634 33 HOH HOH . 
G 4 HOH B 35 635 47 HOH HOH . 
G 4 HOH B 36 636 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 2 -8.536 9.457 -34.201 1 66.06 ? P AMP 301 A 1 
HETATM 2 O O1P AMP . . . C 2 -7.894 9.421 -35.571 1 50.35 ? O1P AMP 301 A 1 
HETATM 3 O O2P AMP . . . C 2 -7.48 9.306 -33.125 1 57.79 ? O2P AMP 301 A 1 
HETATM 4 O O3P AMP . . . C 2 -9.603 10.519 -33.962 1 52 ? O3P AMP 301 A 1 
HETATM 5 O O5' AMP . . . C 2 -9.413 8.125 -34.088 1 59.31 ? O5' AMP 301 A 1 
HETATM 6 C C5' AMP . . . C 2 -10.68 7.99 -34.731 1 57.24 ? C5' AMP 301 A 1 
HETATM 7 C C4' AMP . . . C 2 -11.247 6.614 -34.465 1 59.12 ? C4' AMP 301 A 1 
HETATM 8 O O4' AMP . . . C 2 -10.534 5.649 -35.284 1 49.83 ? O4' AMP 301 A 1 
HETATM 9 C C3' AMP . . . C 2 -11.085 6.135 -33.021 1 58.22 ? C3' AMP 301 A 1 
HETATM 10 O O3' AMP . . . C 2 -12.218 6.418 -32.219 1 70.05 ? O3' AMP 301 A 1 
HETATM 11 C C2' AMP . . . C 2 -10.794 4.647 -33.139 1 54.72 ? C2' AMP 301 A 1 
HETATM 12 O O2' AMP . . . C 2 -12.005 3.906 -33.145 1 59.96 ? O2' AMP 301 A 1 
HETATM 13 C C1' AMP . . . C 2 -10.137 4.542 -34.518 1 54.07 ? C1' AMP 301 A 1 
HETATM 14 N N9 AMP . . . C 2 -8.657 4.53 -34.455 1 54.11 ? N9 AMP 301 A 1 
HETATM 15 C C8 AMP . . . C 2 -7.867 5.34 -33.724 1 50.7 ? C8 AMP 301 A 1 
HETATM 16 N N7 AMP . . . C 2 -6.552 5.033 -33.9 1 52.61 ? N7 AMP 301 A 1 
HETATM 17 C C5 AMP . . . C 2 -6.471 4.002 -34.762 1 49.36 ? C5 AMP 301 A 1 
HETATM 18 C C6 AMP . . . C 2 -5.397 3.2 -35.407 1 42.3 ? C6 AMP 301 A 1 
HETATM 19 N N6 AMP . . . C 2 -4.087 3.414 -35.152 1 35.01 ? N6 AMP 301 A 1 
HETATM 20 N N1 AMP . . . C 2 -5.776 2.212 -36.264 1 43.23 ? N1 AMP 301 A 1 
HETATM 21 C C2 AMP . . . C 2 -7.066 1.959 -36.528 1 40.57 ? C2 AMP 301 A 1 
HETATM 22 N N3 AMP . . . C 2 -8.083 2.649 -35.984 1 44.7 ? N3 AMP 301 A 1 
HETATM 23 C C4 AMP . . . C 2 -7.865 3.67 -35.119 1 53.94 ? C4 AMP 301 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#