data_5TVA # _model_server_result.job_id 1DAzGiS_4pO4Dmb33e7-3g _model_server_result.datetime_utc '2024-11-15 11:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5TVA # _exptl.entry_id 5TVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5TVA _cell.length_a 55.66 _cell.length_b 68.86 _cell.length_c 156.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 173 A CYS 173 1_555 A SG CYS 230 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf2 B SG CYS 173 B CYS 173 1_555 B SG CYS 230 B CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 109 n y N1A C6A COA doub 110 n y C2A N3A COA doub 111 n y C2A H2A COA sing 112 n n N3A C4A COA sing 113 n y C4A C5A COA doub 114 n y C4A N9A COA sing 115 n y C5A C6A COA sing 116 n y C5A N7A COA sing 117 n y C6A N6A COA sing 118 n n N6A H61A COA sing 119 n n N6A H62A COA sing 120 n n N7A C8A COA doub 121 n y C8A N9A COA sing 122 n y C8A H8A COA sing 123 n n N9A C1B COA sing 124 n n C1B C2B COA sing 125 n n C1B O4B COA sing 126 n n C1B H1B COA sing 127 n n C2B O2B COA sing 128 n n C2B C3B COA sing 129 n n C2B H2B COA sing 130 n n O2B HO2A COA sing 131 n n C3B O3B COA sing 132 n n C3B C4B COA sing 133 n n C3B H3B COA sing 134 n n O3B P3B COA sing 135 n n P3B O7A COA doub 136 n n P3B O8A COA sing 137 n n P3B O9A COA sing 138 n n O8A HOA8 COA sing 139 n n O9A HOA9 COA sing 140 n n C4B O4B COA sing 141 n n C4B C5B COA sing 142 n n C4B H4B COA sing 143 n n C5B O5B COA sing 144 n n C5B H51A COA sing 145 n n C5B H52A COA sing 146 n n O5B P1A COA sing 147 n n P1A O1A COA doub 148 n n P1A O2A COA sing 149 n n P1A O3A COA sing 150 n n O2A HOA2 COA sing 151 n n O3A P2A COA sing 152 n n P2A O4A COA doub 153 n n P2A O5A COA sing 154 n n P2A O6A COA sing 155 n n O5A HOA5 COA sing 156 n n O6A CCP COA sing 157 n n CBP CCP COA sing 158 n n CBP CDP COA sing 159 n n CBP CEP COA sing 160 n n CBP CAP COA sing 161 n n CCP H121 COA sing 162 n n CCP H122 COA sing 163 n n CDP H131 COA sing 164 n n CDP H132 COA sing 165 n n CDP H133 COA sing 166 n n CEP H141 COA sing 167 n n CEP H142 COA sing 168 n n CEP H143 COA sing 169 n n CAP OAP COA sing 170 n n CAP C9P COA sing 171 n n CAP H10 COA sing 172 n n OAP HO1 COA sing 173 n n C9P O9P COA doub 174 n n C9P N8P COA sing 175 n n N8P C7P COA sing 176 n n N8P HN8 COA sing 177 n n C7P C6P COA sing 178 n n C7P H71 COA sing 179 n n C7P H72 COA sing 180 n n C6P C5P COA sing 181 n n C6P H61 COA sing 182 n n C6P H62 COA sing 183 n n C5P O5P COA doub 184 n n C5P N4P COA sing 185 n n N4P C3P COA sing 186 n n N4P HN4 COA sing 187 n n C3P C2P COA sing 188 n n C3P H31 COA sing 189 n n C3P H32 COA sing 190 n n C2P S1P COA sing 191 n n C2P H21 COA sing 192 n n C2P H22 COA sing 193 n n S1P HS1 COA sing 194 n n # _atom_sites.entry_id 5TVA _atom_sites.fract_transf_matrix[1][1] 0.017966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014522 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 301 500 AMP AMP . D 3 COA A 1 302 600 COA COA . E 2 AMP B 1 500 500 AMP AMP . F 4 HOH A 1 401 51 HOH HOH . F 4 HOH A 2 402 86 HOH HOH . F 4 HOH A 3 403 102 HOH HOH . F 4 HOH A 4 404 24 HOH HOH . F 4 HOH A 5 405 27 HOH HOH . F 4 HOH A 6 406 81 HOH HOH . F 4 HOH A 7 407 66 HOH HOH . F 4 HOH A 8 408 59 HOH HOH . F 4 HOH A 9 409 8 HOH HOH . F 4 HOH A 10 410 90 HOH HOH . F 4 HOH A 11 411 39 HOH HOH . F 4 HOH A 12 412 56 HOH HOH . F 4 HOH A 13 413 74 HOH HOH . F 4 HOH A 14 414 91 HOH HOH . F 4 HOH A 15 415 11 HOH HOH . F 4 HOH A 16 416 21 HOH HOH . F 4 HOH A 17 417 19 HOH HOH . F 4 HOH A 18 418 18 HOH HOH . F 4 HOH A 19 419 10 HOH HOH . F 4 HOH A 20 420 3 HOH HOH . F 4 HOH A 21 421 1 HOH HOH . F 4 HOH A 22 422 14 HOH HOH . F 4 HOH A 23 423 72 HOH HOH . F 4 HOH A 24 424 65 HOH HOH . F 4 HOH A 25 425 107 HOH HOH . F 4 HOH A 26 426 77 HOH HOH . F 4 HOH A 27 427 5 HOH HOH . F 4 HOH A 28 428 28 HOH HOH . F 4 HOH A 29 429 6 HOH HOH . F 4 HOH A 30 430 80 HOH HOH . F 4 HOH A 31 431 20 HOH HOH . F 4 HOH A 32 432 54 HOH HOH . F 4 HOH A 33 433 43 HOH HOH . F 4 HOH A 34 434 4 HOH HOH . F 4 HOH A 35 435 13 HOH HOH . F 4 HOH A 36 436 17 HOH HOH . F 4 HOH A 37 437 2 HOH HOH . F 4 HOH A 38 438 71 HOH HOH . F 4 HOH A 39 439 85 HOH HOH . F 4 HOH A 40 440 79 HOH HOH . F 4 HOH A 41 441 94 HOH HOH . F 4 HOH A 42 442 57 HOH HOH . F 4 HOH A 43 443 40 HOH HOH . F 4 HOH A 44 444 46 HOH HOH . F 4 HOH A 45 445 70 HOH HOH . F 4 HOH A 46 446 88 HOH HOH . F 4 HOH A 47 447 64 HOH HOH . F 4 HOH A 48 448 78 HOH HOH . F 4 HOH A 49 449 48 HOH HOH . F 4 HOH A 50 450 62 HOH HOH . F 4 HOH A 51 451 29 HOH HOH . F 4 HOH A 52 452 97 HOH HOH . F 4 HOH A 53 453 12 HOH HOH . F 4 HOH A 54 454 31 HOH HOH . F 4 HOH A 55 455 106 HOH HOH . F 4 HOH A 56 456 50 HOH HOH . F 4 HOH A 57 457 101 HOH HOH . F 4 HOH A 58 458 84 HOH HOH . F 4 HOH A 59 459 58 HOH HOH . F 4 HOH A 60 460 9 HOH HOH . F 4 HOH A 61 461 49 HOH HOH . F 4 HOH A 62 462 93 HOH HOH . F 4 HOH A 63 463 103 HOH HOH . F 4 HOH A 64 464 61 HOH HOH . F 4 HOH A 65 465 63 HOH HOH . F 4 HOH A 66 466 92 HOH HOH . F 4 HOH A 67 467 60 HOH HOH . F 4 HOH A 68 468 73 HOH HOH . F 4 HOH A 69 469 95 HOH HOH . F 4 HOH A 70 470 83 HOH HOH . F 4 HOH A 71 471 87 HOH HOH . F 4 HOH A 72 472 34 HOH HOH . F 4 HOH A 73 473 44 HOH HOH . G 4 HOH B 1 601 104 HOH HOH . G 4 HOH B 2 602 68 HOH HOH . G 4 HOH B 3 603 76 HOH HOH . G 4 HOH B 4 604 26 HOH HOH . G 4 HOH B 5 605 7 HOH HOH . G 4 HOH B 6 606 42 HOH HOH . G 4 HOH B 7 607 32 HOH HOH . G 4 HOH B 8 608 30 HOH HOH . G 4 HOH B 9 609 52 HOH HOH . G 4 HOH B 10 610 98 HOH HOH . G 4 HOH B 11 611 22 HOH HOH . G 4 HOH B 12 612 41 HOH HOH . G 4 HOH B 13 613 16 HOH HOH . G 4 HOH B 14 614 35 HOH HOH . G 4 HOH B 15 615 38 HOH HOH . G 4 HOH B 16 616 100 HOH HOH . G 4 HOH B 17 617 45 HOH HOH . G 4 HOH B 18 618 23 HOH HOH . G 4 HOH B 19 619 55 HOH HOH . G 4 HOH B 20 620 37 HOH HOH . G 4 HOH B 21 621 99 HOH HOH . G 4 HOH B 22 622 75 HOH HOH . G 4 HOH B 23 623 53 HOH HOH . G 4 HOH B 24 624 36 HOH HOH . G 4 HOH B 25 625 25 HOH HOH . G 4 HOH B 26 626 82 HOH HOH . G 4 HOH B 27 627 69 HOH HOH . G 4 HOH B 28 628 89 HOH HOH . G 4 HOH B 29 629 105 HOH HOH . G 4 HOH B 30 630 67 HOH HOH . G 4 HOH B 31 631 109 HOH HOH . G 4 HOH B 32 632 96 HOH HOH . G 4 HOH B 33 633 108 HOH HOH . G 4 HOH B 34 634 33 HOH HOH . G 4 HOH B 35 635 47 HOH HOH . G 4 HOH B 36 636 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 -6.862 4.418 -28.768 1 47.84 ? N1A COA 302 A 1 HETATM 2 C C2A COA . . . D 3 -7.289 3.917 -27.599 1 47.13 ? C2A COA 302 A 1 HETATM 3 N N3A COA . . . D 3 -6.498 3.181 -26.829 1 52.55 ? N3A COA 302 A 1 HETATM 4 C C4A COA . . . D 3 -5.241 2.891 -27.219 1 53.84 ? C4A COA 302 A 1 HETATM 5 C C5A COA . . . D 3 -4.759 3.391 -28.431 1 50.56 ? C5A COA 302 A 1 HETATM 6 C C6A COA . . . D 3 -5.64 4.187 -29.206 1 45.52 ? C6A COA 302 A 1 HETATM 7 N N6A COA . . . D 3 -5.159 4.737 -30.538 1 43.92 ? N6A COA 302 A 1 HETATM 8 N N7A COA . . . D 3 -3.496 2.988 -28.584 1 48.49 ? N7A COA 302 A 1 HETATM 9 C C8A COA . . . D 3 -3.175 2.261 -27.531 1 52.15 ? C8A COA 302 A 1 HETATM 10 N N9A COA . . . D 3 -4.206 2.222 -26.684 1 53.69 ? N9A COA 302 A 1 HETATM 11 C C1B COA . . . D 3 -4.115 1.381 -25.455 1 53.3 ? C1B COA 302 A 1 HETATM 12 C C2B COA . . . D 3 -4.99 1.121 -24.575 1 55.28 ? C2B COA 302 A 1 HETATM 13 O O2B COA . . . D 3 -6.325 0.828 -25.099 1 61.09 ? O2B COA 302 A 1 HETATM 14 C C3B COA . . . D 3 -4.265 -0.355 -24.255 1 58.58 ? C3B COA 302 A 1 HETATM 15 O O3B COA . . . D 3 -4.516 -1.183 -25.422 1 53.7 ? O3B COA 302 A 1 HETATM 16 P P3B COA . . . D 3 -5.528 -2.515 -25.58 1 61.9 ? P3B COA 302 A 1 HETATM 17 O O7A COA . . . D 3 -4.761 -3.529 -26.372 1 52.62 ? O7A COA 302 A 1 HETATM 18 O O8A COA . . . D 3 -5.955 -3.096 -24.266 1 66.21 ? O8A COA 302 A 1 HETATM 19 O O9A COA . . . D 3 -6.768 -2.163 -26.359 1 57 ? O9A COA 302 A 1 HETATM 20 C C4B COA . . . D 3 -2.999 -0.08 -24.114 1 55.9 ? C4B COA 302 A 1 HETATM 21 O O4B COA . . . D 3 -2.81 1.386 -24.627 1 50.9 ? O4B COA 302 A 1 HETATM 22 C C5B COA . . . D 3 -1.988 -1.039 -24.907 1 48.5 ? C5B COA 302 A 1 HETATM 23 O O5B COA . . . D 3 -1.922 -0.688 -26.247 1 52.43 ? O5B COA 302 A 1 HETATM 24 P P1A COA . . . D 3 -0.55 -0.8 -27.2 1 56.9 ? P1A COA 302 A 1 HETATM 25 O O1A COA . . . D 3 -0.867 -1.664 -28.428 1 52.73 ? O1A COA 302 A 1 HETATM 26 O O2A COA . . . D 3 0.645 -1.349 -26.458 1 54.62 ? O2A COA 302 A 1 HETATM 27 O O3A COA . . . D 3 -0.22 0.714 -27.757 1 55.38 ? O3A COA 302 A 1 HETATM 28 P P2A COA . . . D 3 1.268 1.316 -28.268 1 55.22 ? P2A COA 302 A 1 HETATM 29 O O4A COA . . . D 3 2.025 1.718 -26.995 1 45.84 ? O4A COA 302 A 1 HETATM 30 O O5A COA . . . D 3 2.102 0.23 -28.965 1 56.07 ? O5A COA 302 A 1 HETATM 31 O O6A COA . . . D 3 0.959 2.65 -29.257 1 61.05 ? O6A COA 302 A 1 HETATM 32 C CBP COA . . . D 3 -0.295 4.101 -30.988 1 58.05 ? CBP COA 302 A 1 HETATM 33 C CCP COA . . . D 3 -0.082 2.666 -30.286 1 58.51 ? CCP COA 302 A 1 HETATM 34 C CDP COA . . . D 3 -0.992 5.067 -29.994 1 46.7 ? CDP COA 302 A 1 HETATM 35 C CEP COA . . . D 3 1.083 4.754 -31.232 1 45.01 ? CEP COA 302 A 1 HETATM 36 C CAP COA . . . D 3 -1.149 3.952 -32.365 1 48.32 ? CAP COA 302 A 1 HETATM 37 O OAP COA . . . D 3 -2.49 4.226 -32.201 1 49.13 ? OAP COA 302 A 1 HETATM 38 C C9P COA . . . D 3 -0.696 4.857 -33.545 1 50.56 ? C9P COA 302 A 1 HETATM 39 O O9P COA . . . D 3 0.106 4.472 -34.369 1 56.64 ? O9P COA 302 A 1 HETATM 40 N N8P COA . . . D 3 -1.241 6.203 -33.7 1 57.09 ? N8P COA 302 A 1 HETATM 41 C C7P COA . . . D 3 -0.802 7.106 -34.813 1 52.76 ? C7P COA 302 A 1 HETATM 42 C C6P COA . . . D 3 -1.936 7.468 -35.761 1 54.34 ? C6P COA 302 A 1 HETATM 43 C C5P COA . . . D 3 -3.122 8.263 -35.109 1 61.21 ? C5P COA 302 A 1 HETATM 44 O O5P COA . . . D 3 -3.614 7.919 -34.102 1 60.99 ? O5P COA 302 A 1 HETATM 45 N N4P COA . . . D 3 -3.628 9.466 -35.818 1 56.68 ? N4P COA 302 A 1 HETATM 46 C C3P COA . . . D 3 -4.757 10.274 -35.199 1 68.73 ? C3P COA 302 A 1 HETATM 47 C C2P COA . . . D 3 -5.331 11.203 -36.275 1 65.73 ? C2P COA 302 A 1 HETATM 48 S S1P COA . . . D 3 -5.734 10.112 -37.674 1 65.91 ? S1P COA 302 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 48 #