data_5TVI # _model_server_result.job_id DGeGANw_RjEJrvdelAdO8Q _model_server_result.datetime_utc '2025-07-16 10:15:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5tvi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5TVI # _exptl.entry_id 5TVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5TVI _cell.length_a 87.48 _cell.length_b 87.48 _cell.length_c 49.67 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5TVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 V CYS 4 1_555 A SG CYS 51 V CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 14 V CYS 14 1_555 A SG CYS 28 V CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf3 A SG CYS 29 V CYS 29 1_555 A SG CYS 74 V CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 49 V CYS 49 1_555 A SG CYS 88 V CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf5 B SG CYS 4 W CYS 4 1_555 B SG CYS 51 W CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 B SG CYS 14 W CYS 14 1_555 B SG CYS 28 W CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 B SG CYS 29 W CYS 29 1_555 B SG CYS 74 W CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf8 B SG CYS 49 W CYS 49 1_555 B SG CYS 88 W CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5TVI _atom_sites.fract_transf_matrix[1][1] 0.011431 _atom_sites.fract_transf_matrix[1][2] 0.0066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020133 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL V 1 101 1 GOL GOL . D 3 MYR V 1 102 1 MYR MYR . E 4 O8N W 1 101 1 O8N O8N . F 5 HOH V 1 201 49 HOH HOH . F 5 HOH V 2 202 111 HOH HOH . F 5 HOH V 3 203 113 HOH HOH . F 5 HOH V 4 204 23 HOH HOH . F 5 HOH V 5 205 14 HOH HOH . F 5 HOH V 6 206 4 HOH HOH . F 5 HOH V 7 207 1 HOH HOH . F 5 HOH V 8 208 6 HOH HOH . F 5 HOH V 9 209 2 HOH HOH . F 5 HOH V 10 210 30 HOH HOH . F 5 HOH V 11 211 57 HOH HOH . F 5 HOH V 12 212 29 HOH HOH . F 5 HOH V 13 213 13 HOH HOH . F 5 HOH V 14 214 26 HOH HOH . F 5 HOH V 15 215 72 HOH HOH . F 5 HOH V 16 216 31 HOH HOH . F 5 HOH V 17 217 55 HOH HOH . F 5 HOH V 18 218 16 HOH HOH . F 5 HOH V 19 219 17 HOH HOH . F 5 HOH V 20 220 34 HOH HOH . F 5 HOH V 21 221 102 HOH HOH . F 5 HOH V 22 222 99 HOH HOH . F 5 HOH V 23 223 83 HOH HOH . F 5 HOH V 24 224 65 HOH HOH . F 5 HOH V 25 225 112 HOH HOH . F 5 HOH V 26 226 94 HOH HOH . F 5 HOH V 27 227 74 HOH HOH . G 5 HOH W 1 201 89 HOH HOH . G 5 HOH W 2 202 42 HOH HOH . G 5 HOH W 3 203 24 HOH HOH . G 5 HOH W 4 204 63 HOH HOH . G 5 HOH W 5 205 9 HOH HOH . G 5 HOH W 6 206 20 HOH HOH . G 5 HOH W 7 207 15 HOH HOH . G 5 HOH W 8 208 33 HOH HOH . G 5 HOH W 9 209 5 HOH HOH . G 5 HOH W 10 210 11 HOH HOH . G 5 HOH W 11 211 32 HOH HOH . G 5 HOH W 12 212 12 HOH HOH . G 5 HOH W 13 213 73 HOH HOH . G 5 HOH W 14 214 8 HOH HOH . G 5 HOH W 15 215 22 HOH HOH . G 5 HOH W 16 216 75 HOH HOH . G 5 HOH W 17 217 25 HOH HOH . G 5 HOH W 18 218 7 HOH HOH . G 5 HOH W 19 219 3 HOH HOH . G 5 HOH W 20 220 51 HOH HOH . G 5 HOH W 21 221 84 HOH HOH . G 5 HOH W 22 222 110 HOH HOH . G 5 HOH W 23 223 19 HOH HOH . G 5 HOH W 24 224 88 HOH HOH . G 5 HOH W 25 225 10 HOH HOH . G 5 HOH W 26 226 18 HOH HOH . G 5 HOH W 27 227 109 HOH HOH . G 5 HOH W 28 228 90 HOH HOH . G 5 HOH W 29 229 41 HOH HOH . G 5 HOH W 30 230 85 HOH HOH . G 5 HOH W 31 231 82 HOH HOH . G 5 HOH W 32 232 28 HOH HOH . G 5 HOH W 33 233 114 HOH HOH . G 5 HOH W 34 234 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 85.429 34.492 -11.506 1 46 ? C1 GOL 101 V 1 HETATM 2 O O1 GOL . . . C 2 84.488 33.483 -11.788 1 41.91 ? O1 GOL 101 V 1 HETATM 3 C C2 GOL . . . C 2 84.822 35.88 -11.629 1 47.49 ? C2 GOL 101 V 1 HETATM 4 O O2 GOL . . . C 2 85.83 36.779 -12.011 1 57.92 ? O2 GOL 101 V 1 HETATM 5 C C3 GOL . . . C 2 83.662 35.945 -12.616 1 47.7 ? C3 GOL 101 V 1 HETATM 6 O O3 GOL . . . C 2 84.121 35.781 -13.939 1 46.84 ? O3 GOL 101 V 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #