data_5TVI
#
_model_server_result.job_id            AB62rVO_STG7QWae-LZioA 
_model_server_result.datetime_utc      '2025-07-17 02:52:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5tvi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":101}' 
#
_entry.id    5TVI 
#
_exptl.entry_id    5TVI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              410.76 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            octacosan-1-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5TVI 
_cell.length_a            87.48 
_cell.length_b            87.48 
_cell.length_c            49.67 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5TVI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 V CYS 4 1_555 A SG CYS 51 V CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf2 A SG CYS 14 V CYS 14 1_555 A SG CYS 28 V CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf3 A SG CYS 29 V CYS 29 1_555 A SG CYS 74 V CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf4 A SG CYS 49 V CYS 49 1_555 A SG CYS 88 V CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf5 B SG CYS 4 W CYS 4 1_555 B SG CYS 51 W CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf6 B SG CYS 14 W CYS 14 1_555 B SG CYS 28 W CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf7 B SG CYS 29 W CYS 29 1_555 B SG CYS 74 W CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf8 B SG CYS 49 W CYS 49 1_555 B SG CYS 88 W CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
#
_chem_comp.formula           'C28 H58 O' 
_chem_comp.formula_weight    410.76 
_chem_comp.id                O8N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              octacosan-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C26 O8N sing 253 n n 
C27 C28 O8N sing 254 n n 
C26 C25 O8N sing 255 n n 
C25 C24 O8N sing 256 n n 
C24 C23 O8N sing 257 n n 
C23 C22 O8N sing 258 n n 
C22 C21 O8N sing 259 n n 
C20 C21 O8N sing 260 n n 
C20 C19 O8N sing 261 n n 
C17 C18 O8N sing 262 n n 
C17 C16 O8N sing 263 n n 
C18 C19 O8N sing 264 n n 
C16 C15 O8N sing 265 n n 
C15 C14 O8N sing 266 n n 
C14 C13 O8N sing 267 n n 
C8 C7 O8N sing 268 n n 
C8 C9 O8N sing 269 n n 
C10 C9 O8N sing 270 n n 
C10 C11 O8N sing 271 n n 
C7 C6 O8N sing 272 n n 
C13 C12 O8N sing 273 n n 
C12 C11 O8N sing 274 n n 
C6 C5 O8N sing 275 n n 
C5 C4 O8N sing 276 n n 
C4 C3 O8N sing 277 n n 
C3 C2 O8N sing 278 n n 
C2 C1 O8N sing 279 n n 
O C1 O8N sing 280 n n 
C28 H1 O8N sing 281 n n 
C28 H2 O8N sing 282 n n 
C28 H3 O8N sing 283 n n 
C27 H4 O8N sing 284 n n 
C27 H5 O8N sing 285 n n 
C26 H6 O8N sing 286 n n 
C26 H7 O8N sing 287 n n 
C25 H8 O8N sing 288 n n 
C25 H9 O8N sing 289 n n 
C24 H10 O8N sing 290 n n 
C24 H11 O8N sing 291 n n 
C23 H12 O8N sing 292 n n 
C23 H13 O8N sing 293 n n 
C22 H14 O8N sing 294 n n 
C22 H15 O8N sing 295 n n 
C21 H16 O8N sing 296 n n 
C21 H17 O8N sing 297 n n 
C20 H18 O8N sing 298 n n 
C20 H19 O8N sing 299 n n 
C19 H20 O8N sing 300 n n 
C19 H21 O8N sing 301 n n 
C18 H22 O8N sing 302 n n 
C18 H23 O8N sing 303 n n 
C17 H24 O8N sing 304 n n 
C17 H25 O8N sing 305 n n 
C16 H26 O8N sing 306 n n 
C16 H27 O8N sing 307 n n 
C15 H28 O8N sing 308 n n 
C15 H29 O8N sing 309 n n 
C14 H30 O8N sing 310 n n 
C14 H31 O8N sing 311 n n 
C13 H32 O8N sing 312 n n 
C13 H33 O8N sing 313 n n 
C12 H34 O8N sing 314 n n 
C12 H35 O8N sing 315 n n 
C11 H36 O8N sing 316 n n 
C11 H37 O8N sing 317 n n 
C10 H38 O8N sing 318 n n 
C10 H39 O8N sing 319 n n 
C9 H40 O8N sing 320 n n 
C9 H41 O8N sing 321 n n 
C8 H42 O8N sing 322 n n 
C8 H43 O8N sing 323 n n 
C7 H44 O8N sing 324 n n 
C7 H45 O8N sing 325 n n 
C6 H46 O8N sing 326 n n 
C6 H47 O8N sing 327 n n 
C5 H48 O8N sing 328 n n 
C5 H49 O8N sing 329 n n 
C4 H50 O8N sing 330 n n 
C4 H51 O8N sing 331 n n 
C3 H52 O8N sing 332 n n 
C3 H53 O8N sing 333 n n 
C2 H54 O8N sing 334 n n 
C2 H55 O8N sing 335 n n 
C1 H56 O8N sing 336 n n 
C1 H57 O8N sing 337 n n 
O H58 O8N sing 338 n n 
#
_atom_sites.entry_id                     5TVI 
_atom_sites.fract_transf_matrix[1][1]    0.011431 
_atom_sites.fract_transf_matrix[1][2]    0.0066 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0132 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL V 1 101 1 GOL GOL . 
D 3 MYR V 1 102 1 MYR MYR . 
E 4 O8N W 1 101 1 O8N O8N . 
F 5 HOH V 1 201 49 HOH HOH . 
F 5 HOH V 2 202 111 HOH HOH . 
F 5 HOH V 3 203 113 HOH HOH . 
F 5 HOH V 4 204 23 HOH HOH . 
F 5 HOH V 5 205 14 HOH HOH . 
F 5 HOH V 6 206 4 HOH HOH . 
F 5 HOH V 7 207 1 HOH HOH . 
F 5 HOH V 8 208 6 HOH HOH . 
F 5 HOH V 9 209 2 HOH HOH . 
F 5 HOH V 10 210 30 HOH HOH . 
F 5 HOH V 11 211 57 HOH HOH . 
F 5 HOH V 12 212 29 HOH HOH . 
F 5 HOH V 13 213 13 HOH HOH . 
F 5 HOH V 14 214 26 HOH HOH . 
F 5 HOH V 15 215 72 HOH HOH . 
F 5 HOH V 16 216 31 HOH HOH . 
F 5 HOH V 17 217 55 HOH HOH . 
F 5 HOH V 18 218 16 HOH HOH . 
F 5 HOH V 19 219 17 HOH HOH . 
F 5 HOH V 20 220 34 HOH HOH . 
F 5 HOH V 21 221 102 HOH HOH . 
F 5 HOH V 22 222 99 HOH HOH . 
F 5 HOH V 23 223 83 HOH HOH . 
F 5 HOH V 24 224 65 HOH HOH . 
F 5 HOH V 25 225 112 HOH HOH . 
F 5 HOH V 26 226 94 HOH HOH . 
F 5 HOH V 27 227 74 HOH HOH . 
G 5 HOH W 1 201 89 HOH HOH . 
G 5 HOH W 2 202 42 HOH HOH . 
G 5 HOH W 3 203 24 HOH HOH . 
G 5 HOH W 4 204 63 HOH HOH . 
G 5 HOH W 5 205 9 HOH HOH . 
G 5 HOH W 6 206 20 HOH HOH . 
G 5 HOH W 7 207 15 HOH HOH . 
G 5 HOH W 8 208 33 HOH HOH . 
G 5 HOH W 9 209 5 HOH HOH . 
G 5 HOH W 10 210 11 HOH HOH . 
G 5 HOH W 11 211 32 HOH HOH . 
G 5 HOH W 12 212 12 HOH HOH . 
G 5 HOH W 13 213 73 HOH HOH . 
G 5 HOH W 14 214 8 HOH HOH . 
G 5 HOH W 15 215 22 HOH HOH . 
G 5 HOH W 16 216 75 HOH HOH . 
G 5 HOH W 17 217 25 HOH HOH . 
G 5 HOH W 18 218 7 HOH HOH . 
G 5 HOH W 19 219 3 HOH HOH . 
G 5 HOH W 20 220 51 HOH HOH . 
G 5 HOH W 21 221 84 HOH HOH . 
G 5 HOH W 22 222 110 HOH HOH . 
G 5 HOH W 23 223 19 HOH HOH . 
G 5 HOH W 24 224 88 HOH HOH . 
G 5 HOH W 25 225 10 HOH HOH . 
G 5 HOH W 26 226 18 HOH HOH . 
G 5 HOH W 27 227 109 HOH HOH . 
G 5 HOH W 28 228 90 HOH HOH . 
G 5 HOH W 29 229 41 HOH HOH . 
G 5 HOH W 30 230 85 HOH HOH . 
G 5 HOH W 31 231 82 HOH HOH . 
G 5 HOH W 32 232 28 HOH HOH . 
G 5 HOH W 33 233 114 HOH HOH . 
G 5 HOH W 34 234 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C28 O8N . . . E 4 109.486 21.527 -14.136 1 34.46 ? C28 O8N 101 W 1 
HETATM 2 C C27 O8N . . . E 4 108.926 20.164 -14.513 1 37.03 ? C27 O8N 101 W 1 
HETATM 3 C C26 O8N . . . E 4 107.414 20.068 -14.398 1 35.84 ? C26 O8N 101 W 1 
HETATM 4 C C25 O8N . . . E 4 106.976 19.311 -13.161 1 43.59 ? C25 O8N 101 W 1 
HETATM 5 C C24 O8N . . . E 4 105.472 19.24 -12.991 1 50.59 ? C24 O8N 101 W 1 
HETATM 6 C C23 O8N . . . E 4 105.011 19.757 -11.641 1 50.18 ? C23 O8N 101 W 1 
HETATM 7 C C22 O8N . . . E 4 104.138 18.794 -10.849 1 49.57 ? C22 O8N 101 W 1 
HETATM 8 C C21 O8N . . . E 4 104.796 18.32 -9.566 1 46.41 ? C21 O8N 101 W 1 
HETATM 9 C C20 O8N . . . E 4 105.889 17.295 -9.855 1 46.86 ? C20 O8N 101 W 1 
HETATM 10 C C19 O8N . . . E 4 107.112 17.418 -8.967 1 38.85 ? C19 O8N 101 W 1 
HETATM 11 C C18 O8N . . . E 4 108.436 17.072 -9.628 1 36.19 ? C18 O8N 101 W 1 
HETATM 12 C C17 O8N . . . E 4 109.405 18.24 -9.685 1 31.55 ? C17 O8N 101 W 1 
HETATM 13 C C16 O8N . . . E 4 110.476 18.137 -8.627 1 38.31 ? C16 O8N 101 W 1 
HETATM 14 C C15 O8N . . . E 4 111.007 19.454 -8.104 1 35.73 ? C15 O8N 101 W 1 
HETATM 15 C C14 O8N . . . E 4 111.479 19.253 -6.677 1 36.06 ? C14 O8N 101 W 1 
HETATM 16 C C13 O8N . . . E 4 110.275 19.006 -5.801 1 45.21 ? C13 O8N 101 W 1 
HETATM 17 C C12 O8N . . . E 4 110.246 17.639 -5.151 1 43.39 ? C12 O8N 101 W 1 
HETATM 18 C C11 O8N . . . E 4 108.842 17.108 -4.966 1 43.27 ? C11 O8N 101 W 1 
HETATM 19 C C10 O8N . . . E 4 108.427 16.185 -6.089 1 43.38 ? C10 O8N 101 W 1 
HETATM 20 C C9 O8N . . . E 4 107.816 14.878 -5.641 1 45.01 ? C9 O8N 101 W 1 
HETATM 21 C C8 O8N . . . E 4 108.102 13.744 -6.609 1 49.51 ? C8 O8N 101 W 1 
HETATM 22 C C7 O8N . . . E 4 108.268 12.405 -5.913 1 45.35 ? C7 O8N 101 W 1 
HETATM 23 C C6 O8N . . . E 4 109.526 12.297 -5.07 1 45.18 ? C6 O8N 101 W 1 
HETATM 24 C C5 O8N . . . E 4 109.338 12.441 -3.568 1 41.66 ? C5 O8N 101 W 1 
HETATM 25 C C4 O8N . . . E 4 110.387 13.327 -2.933 1 40.02 ? C4 O8N 101 W 1 
HETATM 26 C C3 O8N . . . E 4 109.933 14.088 -1.692 1 47.96 ? C3 O8N 101 W 1 
HETATM 27 C C2 O8N . . . E 4 110.485 15.503 -1.624 1 48.53 ? C2 O8N 101 W 1 
HETATM 28 C C1 O8N . . . E 4 111.328 15.75 -0.389 1 47.8 ? C1 O8N 101 W 1 
HETATM 29 O O O8N . . . E 4 112.545 16.389 -0.738 1 42.24 ? O O8N 101 W 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#